Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05525

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,033,673	-				-2.0
1,033,673	-				-1.4
1,033,674	+				-0.9
1,033,741	-		MMJJ_RS05520	0.13	+1.6
1,033,742	+		MMJJ_RS05520	0.13	+3.6
1,033,742	+		MMJJ_RS05520	0.13	-2.1
1,033,746	-		MMJJ_RS05520	0.14	+2.5
1,033,811	+		MMJJ_RS05520	0.20	-3.5
1,033,816	+		MMJJ_RS05520	0.21	-1.4
1,033,816	+		MMJJ_RS05520	0.21	+2.1
1,033,818	-		MMJJ_RS05520	0.21	+4.7
1,033,901	+		MMJJ_RS05520	0.29	-0.7
1,033,906	-		MMJJ_RS05520	0.29	+0.1
1,033,906	-		MMJJ_RS05520	0.29	-1.4
1,033,907	+		MMJJ_RS05520	0.30	-0.7
1,033,907	+		MMJJ_RS05520	0.30	-0.2
1,033,912	+		MMJJ_RS05520	0.30	-0.9
1,033,945	-		MMJJ_RS05520	0.33	+1.0
1,033,945	-		MMJJ_RS05520	0.33	+2.3
1,033,946	+		MMJJ_RS05520	0.33	+1.0
1,033,946	+		MMJJ_RS05520	0.33	-1.1
1,033,946	+		MMJJ_RS05520	0.33	+1.0
1,033,946	+		MMJJ_RS05520	0.33	-0.7
1,033,951	-		MMJJ_RS05520	0.34	+1.8
1,033,952	+		MMJJ_RS05520	0.34	+1.2
1,033,972	+		MMJJ_RS05520	0.36	+1.8
1,033,974	+		MMJJ_RS05520	0.36	-0.2
1,033,995	-		MMJJ_RS05520	0.38	-1.5
1,034,002	-		MMJJ_RS05520	0.39	-1.3
1,034,002	-		MMJJ_RS05520	0.39	+0.2
1,034,014	-		MMJJ_RS05520	0.40	-1.2
1,034,020	-		MMJJ_RS05520	0.41	+2.2
1,034,023	-		MMJJ_RS05520	0.41	+1.6
1,034,024	+		MMJJ_RS05520	0.41	-1.7
1,034,024	+		MMJJ_RS05520	0.41	-1.4
1,034,072	-		MMJJ_RS05520	0.46	+0.4
1,034,072	-		MMJJ_RS05520	0.46	-1.4
1,034,073	+		MMJJ_RS05520	0.46	+0.9
1,034,073	+		MMJJ_RS05520	0.46	-1.2
1,034,073	+		MMJJ_RS05520	0.46	+2.1
1,034,109	+		MMJJ_RS05520	0.49	-0.6
1,034,109	+		MMJJ_RS05520	0.49	+4.2
1,034,109	+		MMJJ_RS05520	0.49	-1.6
1,034,109	+		MMJJ_RS05520	0.49	-0.9
1,034,191	+		MMJJ_RS05520	0.57	-2.9
1,034,278	+		MMJJ_RS05520	0.66	+1.5
1,034,362	+		MMJJ_RS05520	0.74	-1.2
1,034,373	-		MMJJ_RS05520	0.75	+1.1
1,034,476	+		MMJJ_RS05520	0.85	-0.3
1,034,487	-		MMJJ_RS05520	0.86	+1.4
1,034,487	-		MMJJ_RS05520	0.86	-1.7
1,034,597	+				-1.1
1,034,600	+				-2.4
1,034,600	+				-1.8
1,034,608	-				-1.9
1,034,608	-				-2.3
1,034,612	+				+3.8
1,034,644	-				+0.7
1,034,699	+		MMJJ_RS05525	0.12	+1.1
1,034,710	-		MMJJ_RS05525	0.15	-2.5
1,034,745	+		MMJJ_RS05525	0.22	-2.0
1,034,763	-		MMJJ_RS05525	0.26	-2.3
1,034,763	-		MMJJ_RS05525	0.26	-1.4
1,034,764	+		MMJJ_RS05525	0.26	-3.8
1,034,768	-		MMJJ_RS05525	0.27	+2.5
1,034,866	+		MMJJ_RS05525	0.48	-1.5
1,034,876	+		MMJJ_RS05525	0.50	-3.0
1,034,918	-		MMJJ_RS05525	0.59	-2.0
1,034,919	+		MMJJ_RS05525	0.59	+0.8
1,034,919	+		MMJJ_RS05525	0.59	-1.0
1,034,937	+		MMJJ_RS05525	0.63	-3.4
1,034,937	+		MMJJ_RS05525	0.63	+1.2
1,034,939	-		MMJJ_RS05525	0.63	-1.6
1,034,939	-		MMJJ_RS05525	0.63	-1.2
1,034,939	-		MMJJ_RS05525	0.63	+3.7
1,034,940	+		MMJJ_RS05525	0.63	+3.2
1,034,940	+		MMJJ_RS05525	0.63	+0.2
1,034,964	+		MMJJ_RS05525	0.68	-1.6
1,035,011	+		MMJJ_RS05525	0.78	-0.6
1,035,015	+		MMJJ_RS05525	0.79	-1.0
1,035,015	+		MMJJ_RS05525	0.79	-1.8
1,035,029	-		MMJJ_RS05525	0.82	+0.1
1,035,029	-		MMJJ_RS05525	0.82	-2.0
1,035,031	-		MMJJ_RS05525	0.82	-0.4
1,035,045	+		MMJJ_RS05525	0.85	-1.9
1,035,079	-				-1.1
1,035,088	-				+2.8
1,035,089	+				+0.4
1,035,089	+				+0.8
1,035,111	-				-1.3
1,035,123	-				+0.2
1,035,123	-				+2.5
1,035,123	-				-1.4
1,035,124	+				-0.1
1,035,124	+				-2.9
1,035,124	+				-1.4
1,035,124	+				+0.6
1,035,124	+				+1.4
1,035,124	+				-1.0
1,035,127	-				+1.2
1,035,128	+				+2.6
1,035,128	+				-0.9
1,035,128	+				-2.8
1,035,172	+		MMJJ_RS05530	0.13	+0.5
1,035,190	+		MMJJ_RS05530	0.18	-2.7
1,035,190	+		MMJJ_RS05530	0.18	+2.1
1,035,390	-		MMJJ_RS05530	0.76	+1.6
1,035,391	+		MMJJ_RS05530	0.76	+2.0
1,035,391	+		MMJJ_RS05530	0.76	+1.6
1,035,430	+		MMJJ_RS05530	0.88	-0.8
1,035,506	-				-0.2
1,035,520	+				-0.3
1,035,538	+				+1.4
1,035,548	+				-1.2
1,035,550	-				-3.2
1,035,571	-				-0.6
1,035,618	-				+2.6
1,035,618	-				+0.5
1,035,619	+				-1.4
1,035,619	+				-0.9
1,035,619	+				-2.5
1,035,624	-				-0.0
1,035,625	+				+1.5
1,035,625	+				-2.3
1,035,625	+				+1.4
1,035,625	+				+2.7
1,035,656	-				-0.4
1,035,657	+				-2.1
1,035,657	+				-2.2
1,035,659	-				-2.0
1,035,659	-				+0.8
1,035,744	-		MMJJ_RS05535	0.11	-2.8
1,035,744	-		MMJJ_RS05535	0.11	-2.9
1,035,745	+				+0.4
1,035,747	+		MMJJ_RS05535	0.11	-1.1
1,035,914	+		MMJJ_RS05535	0.29	-2.4
1,035,914	+		MMJJ_RS05535	0.29	-2.0
1,035,918	+		MMJJ_RS05535	0.29	-3.6
1,035,918	+		MMJJ_RS05535	0.29	-3.4
1,035,924	-		MMJJ_RS05535	0.30	-1.2
1,035,970	-		MMJJ_RS05535	0.34	-2.7
1,035,993	+		MMJJ_RS05535	0.37	-1.9
1,036,017	+		MMJJ_RS05535	0.39	-0.9
1,036,024	-		MMJJ_RS05535	0.40	-1.4
1,036,025	+		MMJJ_RS05535	0.40	-2.0
1,036,025	+		MMJJ_RS05535	0.40	-1.7