Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05445

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,012,069	+				-0.6
1,012,069	+				+1.7
1,012,076	-				+1.6
1,012,077	+				+0.4
1,012,080	+				-0.0
1,012,080	+				-1.0
1,012,080	+				+1.5
1,012,080	+				+0.1
1,012,118	+				-3.1
1,012,278	+		MMJJ_RS05440	0.16	+0.7
1,012,326	-		MMJJ_RS05440	0.21	+1.9
1,012,327	+		MMJJ_RS05440	0.22	+1.8
1,012,337	+		MMJJ_RS05440	0.23	-2.6
1,012,352	-		MMJJ_RS05440	0.24	-1.7
1,012,355	+		MMJJ_RS05440	0.25	+0.6
1,012,367	+		MMJJ_RS05440	0.26	-0.5
1,012,416	-		MMJJ_RS05440	0.31	-0.9
1,012,520	-		MMJJ_RS05440	0.43	-0.2
1,012,657	-		MMJJ_RS05440	0.58	-2.2
1,012,658	+		MMJJ_RS05440	0.58	-2.6
1,012,673	+		MMJJ_RS05440	0.60	-0.9
1,012,673	+		MMJJ_RS05440	0.60	-1.9
1,012,696	-		MMJJ_RS05440	0.63	+0.3
1,012,696	-		MMJJ_RS05440	0.63	-1.6
1,012,742	-		MMJJ_RS05440	0.68	-3.7
1,012,752	-		MMJJ_RS05440	0.69	-3.1
1,012,752	-		MMJJ_RS05440	0.69	-0.8
1,012,767	+		MMJJ_RS05440	0.71	-0.2
1,012,767	+		MMJJ_RS05440	0.71	-3.3
1,012,780	-		MMJJ_RS05440	0.72	+0.7
1,012,780	-		MMJJ_RS05440	0.72	-0.4
1,012,781	+		MMJJ_RS05440	0.72	-0.2
1,012,793	-		MMJJ_RS05440	0.73	-1.7
1,012,793	-		MMJJ_RS05440	0.73	-0.7
1,012,879	-		MMJJ_RS05440	0.83	-1.8
1,012,880	+		MMJJ_RS05440	0.83	-1.3
1,012,894	-		MMJJ_RS05440	0.85	-0.8
1,012,899	-		MMJJ_RS05440	0.85	-0.8
1,012,900	+		MMJJ_RS05440	0.85	+1.1
1,012,900	+		MMJJ_RS05440	0.85	-0.2
1,012,918	-		MMJJ_RS05440	0.87	-2.3
1,012,918	-		MMJJ_RS05440	0.87	+1.7
1,012,919	+		MMJJ_RS05440	0.88	-0.7
1,012,919	+		MMJJ_RS05440	0.88	-1.2
1,012,928	-		MMJJ_RS05440	0.89	-0.8
1,012,947	-				+1.5
1,012,952	-				-0.1
1,012,982	-				+1.1
1,012,982	-				-0.2
1,012,983	+				+1.4
1,012,988	+				-1.2
1,012,989	-				+0.4
1,012,989	-				-0.2
1,012,991	-				+1.4
1,012,996	+				+0.8
1,013,009	-				+1.4
1,013,012	+				-0.6
1,013,029	+				-1.4
1,013,081	+				+1.4
1,013,122	+				+1.4
1,013,725	-				-0.2
1,013,847	-				+1.4
1,013,847	-		MMJJ_RS05445	0.71	-1.7
1,013,852	-				+1.4
1,013,864	-		MMJJ_RS05445	0.73	-0.2
1,013,864	-				-0.6
1,013,983	+		MMJJ_RS05445	0.84	-0.2
1,014,015	-		MMJJ_RS05445	0.87	-0.6
1,014,097	+				+0.4
1,014,126	-				-0.4
1,014,126	-				-0.8
1,014,144	-				+1.7
1,014,144	-				+1.0
1,014,145	+				+3.4
1,014,145	+				-0.9
1,014,145	+				+2.4
1,014,145	+				-1.7
1,014,176	-				+1.7
1,014,192	-				-2.7
1,014,193	+				+0.1
1,014,197	-				-0.7
1,014,212	+				-2.4
1,014,223	-				-0.2
1,014,223	-				-0.5
1,014,223	-				-2.3
1,014,223	-				-1.9
1,014,224	+				+1.1
1,014,226	-				+1.1
1,014,226	-				-0.2
1,014,227	+				+1.5
1,014,230	-				+2.0
1,014,230	-				-0.2
1,014,231	+				-2.3
1,014,271	-				+0.2
1,014,272	+				-1.4
1,014,277	-				-1.8
1,014,285	-				-3.0
1,014,300	-				-1.2
1,014,300	-				+1.4
1,014,300	-				-0.5
1,014,318	-		MMJJ_RS05450	0.11	+2.4
1,014,322	-		MMJJ_RS05450	0.12	-0.5
1,014,322	-		MMJJ_RS05450	0.12	+0.5
1,014,322	-		MMJJ_RS05450	0.12	-2.7
1,014,322	-		MMJJ_RS05450	0.12	+0.1
1,014,323	+		MMJJ_RS05450	0.12	-0.9
1,014,323	+		MMJJ_RS05450	0.12	-1.7
1,014,386	+		MMJJ_RS05450	0.18	-2.7
1,014,388	-				+1.4
1,014,390	-		MMJJ_RS05450	0.18	+1.6
1,014,390	-		MMJJ_RS05450	0.18	+0.1
1,014,391	+		MMJJ_RS05450	0.18	-2.6
1,014,436	-		MMJJ_RS05450	0.23	-3.2
1,014,436	-		MMJJ_RS05450	0.23	-2.5
1,014,437	+		MMJJ_RS05450	0.23	+0.9
1,014,442	-		MMJJ_RS05450	0.23	+0.3
1,014,443	+		MMJJ_RS05450	0.23	-2.6
1,014,483	-		MMJJ_RS05450	0.27	+0.3
1,014,487	-		MMJJ_RS05450	0.27	+0.9
1,014,487	-		MMJJ_RS05450	0.27	+0.3
1,014,487	-		MMJJ_RS05450	0.27	-1.2
1,014,488	+		MMJJ_RS05450	0.27	+1.8
1,014,511	-		MMJJ_RS05450	0.30	-2.8
1,014,512	+		MMJJ_RS05450	0.30	+0.2
1,014,512	+		MMJJ_RS05450	0.30	-3.6
1,014,512	+		MMJJ_RS05450	0.30	+0.1
1,014,569	-		MMJJ_RS05450	0.35	+0.4
1,014,569	-		MMJJ_RS05450	0.35	-1.3
1,014,569	-		MMJJ_RS05450	0.35	-0.7
1,014,570	+		MMJJ_RS05450	0.35	-1.7
1,014,571	-		MMJJ_RS05450	0.35	-0.2
1,014,571	-		MMJJ_RS05450	0.35	-1.7
1,014,571	-		MMJJ_RS05450	0.35	-1.6
1,014,583	-		MMJJ_RS05450	0.36	+0.5
1,014,629	+		MMJJ_RS05450	0.41	-1.4
1,014,652	-		MMJJ_RS05450	0.43	+2.6
1,014,689	-		MMJJ_RS05450	0.46	+0.1
1,014,761	+		MMJJ_RS05450	0.53	-0.2
1,014,764	+		MMJJ_RS05450	0.53	-1.9
1,014,790	-		MMJJ_RS05450	0.56	-1.9
1,014,791	+		MMJJ_RS05450	0.56	+0.4
1,014,944	-		MMJJ_RS05450	0.70	-0.8
1,015,021	-		MMJJ_RS05450	0.77	+0.4
1,015,022	+		MMJJ_RS05450	0.78	-1.0
1,015,022	+		MMJJ_RS05450	0.78	+0.9
1,015,030	+		MMJJ_RS05450	0.78	-2.2
1,015,051	-		MMJJ_RS05450	0.80	-2.4
1,015,071	-		MMJJ_RS05450	0.82	-0.6
1,015,072	+		MMJJ_RS05450	0.82	-2.4
1,015,075	-		MMJJ_RS05450	0.83	-0.6
1,015,106	-		MMJJ_RS05450	0.85	-0.6
1,015,106	-		MMJJ_RS05450	0.85	-1.7
1,015,106	-		MMJJ_RS05450	0.85	-1.6
1,015,106	-		MMJJ_RS05450	0.85	-3.4
1,015,107	+		MMJJ_RS05450	0.86	-2.3
1,015,107	+		MMJJ_RS05450	0.86	-1.0
1,015,107	+		MMJJ_RS05450	0.86	-0.1
1,015,107	+		MMJJ_RS05450	0.86	-2.2
1,015,107	+		MMJJ_RS05450	0.86	-1.8
1,015,107	+		MMJJ_RS05450	0.86	-2.0
1,015,114	-		MMJJ_RS05450	0.86	-0.2