Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05415

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
1,004,181	-		MMJJ_RS05405	0.54	-3.9
1,004,240	-		MMJJ_RS05405	0.60	-2.6
1,004,276	-		MMJJ_RS05405	0.63	-1.2
1,004,288	+		MMJJ_RS05405	0.64	-1.4
1,004,312	-		MMJJ_RS05405	0.66	-0.4
1,004,399	-		MMJJ_RS05405	0.75	+2.0
1,004,425	-		MMJJ_RS05405	0.77	+3.6
1,004,426	+		MMJJ_RS05405	0.77	-1.0
1,004,433	-		MMJJ_RS05405	0.78	+0.4
1,004,433	-		MMJJ_RS05405	0.78	-2.7
1,004,433	-		MMJJ_RS05405	0.78	+1.1
1,004,433	-		MMJJ_RS05405	0.78	+2.6
1,004,434	+		MMJJ_RS05405	0.78	+0.4
1,004,434	+		MMJJ_RS05405	0.78	+0.9
1,004,489	-		MMJJ_RS05405	0.83	+0.2
1,004,489	-		MMJJ_RS05405	0.83	+2.5
1,004,489	-		MMJJ_RS05405	0.83	-1.9
1,004,489	-		MMJJ_RS05405	0.83	-2.0
1,004,516	+		MMJJ_RS05405	0.86	+1.0
1,004,579	-				-0.6
1,004,579	-				+1.3
1,004,579	-				-0.4
1,004,580	+				-2.2
1,004,589	-				+2.1
1,004,590	+				+1.0
1,004,590	+				-2.0
1,004,655	-				+0.4
1,004,656	+				+2.5
1,004,661	+				-0.3
1,004,663	-				-2.2
1,004,663	-				-1.4
1,004,667	-				+0.4
1,004,668	+				-0.1
1,004,690	+				-0.7
1,004,697	+				+1.4
1,004,800	-		MMJJ_RS05410	0.21	+0.3
1,004,801	+		MMJJ_RS05410	0.21	-2.2
1,004,804	-		MMJJ_RS05410	0.22	+0.6
1,004,805	+		MMJJ_RS05410	0.22	+2.0
1,004,863	-		MMJJ_RS05410	0.35	-0.1
1,004,863	-		MMJJ_RS05410	0.35	+1.4
1,004,864	+		MMJJ_RS05410	0.36	+3.8
1,004,935	-		MMJJ_RS05410	0.52	+1.3
1,004,936	+		MMJJ_RS05410	0.53	+2.8
1,004,936	+		MMJJ_RS05410	0.53	-1.4
1,004,936	+		MMJJ_RS05410	0.53	+1.7
1,004,939	+		MMJJ_RS05410	0.53	+1.3
1,004,941	-		MMJJ_RS05410	0.54	+2.5
1,004,981	-		MMJJ_RS05410	0.63	-3.4
1,004,988	+		MMJJ_RS05410	0.65	+1.5
1,004,988	+		MMJJ_RS05410	0.65	-0.0
1,005,071	-		MMJJ_RS05410	0.84	+1.4
1,005,072	+		MMJJ_RS05410	0.85	-0.3
1,005,072	+		MMJJ_RS05410	0.85	-0.3
1,005,076	-		MMJJ_RS05410	0.85	-0.1
1,005,084	+		MMJJ_RS05410	0.87	-1.3
1,005,136	+				-0.4
1,005,140	-				-1.2
1,005,140	-				-2.7
1,005,141	+				+2.6
1,005,143	+				-2.0
1,005,381	-		MMJJ_RS05415	0.19	-0.6
1,005,435	+				-0.2
1,005,584	+		MMJJ_RS05415	0.37	+1.4
1,006,051	-		MMJJ_RS05415	0.78	-0.6
1,006,095	+		MMJJ_RS05415	0.82	-0.9
1,006,142	+		MMJJ_RS05415	0.86	-0.9
1,006,258	-				-1.1
1,006,537	-		MMJJ_RS05420	0.13	+1.4
1,006,537	-		MMJJ_RS05420	0.13	-1.4
1,006,875	+				+0.4
1,007,061	+		MMJJ_RS05420	0.43	-0.6