Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05360

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS05350 and MMJJ_RS05355 are separated by 4 nucleotidesMMJJ_RS05355 and MMJJ_RS05360 are separated by 116 nucleotidesMMJJ_RS05360 and MMJJ_RS05365 are separated by 90 nucleotidesMMJJ_RS05365 and MMJJ_RS05370 are separated by 31 nucleotides MMJJ_RS05350: MMJJ_RS05350 - DUF192 domain-containing protein, at 994,897 to 995,232 _RS05350 MMJJ_RS05355: MMJJ_RS05355 - DUF2121 domain-containing protein, at 995,237 to 996,112 _RS05355 MMJJ_RS05360: MMJJ_RS05360 - nickel-responsive transcriptional regulator NikR, at 996,229 to 996,654 _RS05360 MMJJ_RS05365: MMJJ_RS05365 - DUF2798 domain-containing protein, at 996,745 to 996,972 _RS05365 MMJJ_RS05370: MMJJ_RS05370 - LysR family transcriptional regulator, at 997,004 to 997,846 _RS05370 Position (kb) 996 997Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 995.231 kb on + strandat 995.315 kb on - strandat 995.316 kb on + strandat 995.317 kb on - strandat 995.382 kb on + strand, within MMJJ_RS05355at 995.382 kb on + strand, within MMJJ_RS05355at 995.387 kb on + strand, within MMJJ_RS05355at 995.409 kb on - strand, within MMJJ_RS05355at 995.410 kb on + strand, within MMJJ_RS05355at 995.411 kb on - strand, within MMJJ_RS05355at 995.411 kb on - strand, within MMJJ_RS05355at 995.411 kb on - strand, within MMJJ_RS05355at 995.412 kb on + strand, within MMJJ_RS05355at 995.483 kb on - strand, within MMJJ_RS05355at 995.523 kb on - strand, within MMJJ_RS05355at 995.527 kb on - strand, within MMJJ_RS05355at 995.531 kb on - strand, within MMJJ_RS05355at 995.592 kb on - strand, within MMJJ_RS05355at 995.612 kb on - strand, within MMJJ_RS05355at 995.613 kb on + strand, within MMJJ_RS05355at 995.613 kb on + strand, within MMJJ_RS05355at 995.706 kb on + strand, within MMJJ_RS05355at 995.729 kb on - strand, within MMJJ_RS05355at 995.729 kb on - strand, within MMJJ_RS05355at 995.729 kb on - strand, within MMJJ_RS05355at 995.730 kb on + strand, within MMJJ_RS05355at 995.731 kb on - strand, within MMJJ_RS05355at 995.874 kb on + strand, within MMJJ_RS05355at 995.886 kb on + strand, within MMJJ_RS05355at 995.921 kb on + strand, within MMJJ_RS05355at 995.930 kb on + strand, within MMJJ_RS05355at 995.930 kb on + strand, within MMJJ_RS05355at 996.059 kb on + strandat 996.070 kb on - strandat 996.071 kb on + strandat 996.124 kb on - strandat 996.138 kb on + strandat 996.146 kb on + strandat 996.187 kb on - strandat 996.190 kb on - strandat 996.196 kb on - strandat 996.196 kb on - strandat 996.196 kb on - strandat 996.196 kb on - strandat 996.207 kb on - strandat 996.208 kb on + strandat 996.226 kb on + strandat 996.226 kb on + strandat 996.249 kb on + strandat 996.249 kb on + strandat 996.252 kb on - strandat 996.252 kb on - strandat 996.252 kb on - strandat 996.252 kb on - strandat 996.252 kb on - strandat 996.252 kb on - strandat 996.252 kb on - strandat 996.253 kb on + strandat 996.253 kb on + strandat 996.253 kb on + strandat 996.253 kb on + strandat 996.253 kb on + strandat 996.253 kb on + strandat 996.253 kb on + strandat 996.255 kb on + strandat 996.255 kb on + strandat 996.311 kb on + strand, within MMJJ_RS05360at 996.411 kb on - strand, within MMJJ_RS05360at 996.440 kb on - strand, within MMJJ_RS05360at 996.440 kb on - strand, within MMJJ_RS05360at 996.453 kb on + strand, within MMJJ_RS05360at 996.462 kb on + strand, within MMJJ_RS05360at 996.525 kb on - strand, within MMJJ_RS05360at 996.533 kb on - strand, within MMJJ_RS05360at 996.533 kb on - strand, within MMJJ_RS05360at 996.565 kb on + strand, within MMJJ_RS05360at 996.585 kb on - strand, within MMJJ_RS05360at 996.586 kb on + strand, within MMJJ_RS05360at 996.602 kb on - strand, within MMJJ_RS05360at 996.612 kb on + strandat 996.623 kb on - strandat 996.678 kb on + strandat 996.718 kb on - strandat 996.719 kb on + strandat 996.734 kb on - strandat 996.734 kb on - strandat 996.742 kb on - strandat 996.743 kb on + strandat 996.743 kb on + strandat 996.743 kb on + strandat 996.763 kb on - strandat 996.785 kb on - strand, within MMJJ_RS05365at 996.786 kb on + strand, within MMJJ_RS05365at 996.812 kb on - strand, within MMJJ_RS05365at 996.812 kb on - strand, within MMJJ_RS05365at 996.812 kb on - strand, within MMJJ_RS05365at 996.812 kb on - strand, within MMJJ_RS05365at 996.825 kb on + strand, within MMJJ_RS05365at 996.837 kb on + strand, within MMJJ_RS05365at 996.850 kb on + strand, within MMJJ_RS05365at 996.900 kb on - strand, within MMJJ_RS05365at 996.900 kb on - strand, within MMJJ_RS05365at 996.900 kb on - strand, within MMJJ_RS05365at 996.901 kb on + strand, within MMJJ_RS05365at 996.901 kb on + strand, within MMJJ_RS05365at 996.901 kb on + strand, within MMJJ_RS05365at 996.901 kb on + strand, within MMJJ_RS05365at 996.901 kb on + strand, within MMJJ_RS05365at 996.901 kb on + strand, within MMJJ_RS05365at 996.903 kb on + strand, within MMJJ_RS05365at 996.919 kb on - strand, within MMJJ_RS05365at 996.920 kb on + strandat 996.947 kb on - strand, within MMJJ_RS05365at 996.960 kb on + strandat 996.960 kb on + strandat 996.963 kb on - strandat 996.966 kb on - strandat 996.970 kb on - strandat 996.977 kb on + strandat 996.984 kb on + strandat 996.987 kb on + strandat 996.998 kb on + strandat 996.998 kb on + strandat 997.001 kb on - strandat 997.001 kb on - strandat 997.002 kb on + strandat 997.054 kb on + strandat 997.055 kb on - strandat 997.111 kb on - strand, within MMJJ_RS05370at 997.112 kb on + strand, within MMJJ_RS05370at 997.183 kb on - strand, within MMJJ_RS05370at 997.195 kb on - strand, within MMJJ_RS05370at 997.199 kb on + strand, within MMJJ_RS05370at 997.258 kb on - strand, within MMJJ_RS05370at 997.311 kb on - strand, within MMJJ_RS05370at 997.312 kb on + strand, within MMJJ_RS05370at 997.316 kb on + strand, within MMJJ_RS05370at 997.316 kb on + strand, within MMJJ_RS05370at 997.362 kb on + strand, within MMJJ_RS05370at 997.526 kb on - strand, within MMJJ_RS05370at 997.528 kb on - strand, within MMJJ_RS05370at 997.544 kb on + strand, within MMJJ_RS05370at 997.572 kb on - strand, within MMJJ_RS05370at 997.580 kb on + strand, within MMJJ_RS05370at 997.582 kb on + strandat 997.585 kb on + strand, within MMJJ_RS05370at 997.589 kb on - strand, within MMJJ_RS05370at 997.590 kb on + strand, within MMJJ_RS05370at 997.595 kb on + strand, within MMJJ_RS05370

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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995,231 + +0.9
995,315 - -0.9
995,316 + -1.7
995,317 - -2.1
995,382 + MMJJ_RS05355 0.17 -2.0
995,382 + MMJJ_RS05355 0.17 -2.6
995,387 + MMJJ_RS05355 0.17 +1.4
995,409 - MMJJ_RS05355 0.20 +3.3
995,410 + MMJJ_RS05355 0.20 -4.2
995,411 - MMJJ_RS05355 0.20 -2.1
995,411 - MMJJ_RS05355 0.20 +3.5
995,411 - MMJJ_RS05355 0.20 -1.6
995,412 + MMJJ_RS05355 0.20 -3.5
995,483 - MMJJ_RS05355 0.28 +1.8
995,523 - MMJJ_RS05355 0.33 -0.6
995,527 - MMJJ_RS05355 0.33 -3.6
995,531 - MMJJ_RS05355 0.34 -2.5
995,592 - MMJJ_RS05355 0.41 -2.0
995,612 - MMJJ_RS05355 0.43 -2.9
995,613 + MMJJ_RS05355 0.43 -1.8
995,613 + MMJJ_RS05355 0.43 +2.5
995,706 + MMJJ_RS05355 0.54 -0.9
995,729 - MMJJ_RS05355 0.56 +0.8
995,729 - MMJJ_RS05355 0.56 -1.6
995,729 - MMJJ_RS05355 0.56 +0.2
995,730 + MMJJ_RS05355 0.56 -0.4
995,731 - MMJJ_RS05355 0.56 +2.8
995,874 + MMJJ_RS05355 0.73 +0.6
995,886 + MMJJ_RS05355 0.74 +1.7
995,921 + MMJJ_RS05355 0.78 +1.9
995,930 + MMJJ_RS05355 0.79 -0.4
995,930 + MMJJ_RS05355 0.79 -1.4
996,059 + -1.8
996,070 - +4.2
996,071 + +0.6
996,124 - -1.0
996,138 + -0.4
996,146 + +1.0
996,187 - -0.7
996,190 - -0.8
996,196 - -2.5
996,196 - -1.6
996,196 - -1.2
996,196 - -1.1
996,207 - -1.5
996,208 + -1.0
996,226 + -0.2
996,226 + -1.8
996,249 + -2.1
996,249 + -0.1
996,252 - -0.9
996,252 - -1.6
996,252 - +0.8
996,252 - -0.9
996,252 - -2.8
996,252 - -2.1
996,252 - -1.9
996,253 + -1.2
996,253 + +0.1
996,253 + -1.8
996,253 + -1.8
996,253 + -1.6
996,253 + -0.2
996,253 + -1.1
996,255 + -1.9
996,255 + -1.6
996,311 + MMJJ_RS05360 0.19 -1.8
996,411 - MMJJ_RS05360 0.43 -2.2
996,440 - MMJJ_RS05360 0.50 -2.1
996,440 - MMJJ_RS05360 0.50 -2.4
996,453 + MMJJ_RS05360 0.53 -0.7
996,462 + MMJJ_RS05360 0.55 -0.1
996,525 - MMJJ_RS05360 0.69 -1.4
996,533 - MMJJ_RS05360 0.71 -2.8
996,533 - MMJJ_RS05360 0.71 -1.7
996,565 + MMJJ_RS05360 0.79 -0.9
996,585 - MMJJ_RS05360 0.84 -1.7
996,586 + MMJJ_RS05360 0.84 -1.4
996,602 - MMJJ_RS05360 0.88 -1.5
996,612 + -0.6
996,623 - -2.2
996,678 + -0.6
996,718 - +1.1
996,719 + +0.1
996,734 - -1.2
996,734 - -1.3
996,742 - -1.5
996,743 + -0.0
996,743 + -0.6
996,743 + +0.4
996,763 - -2.2
996,785 - MMJJ_RS05365 0.18 -2.3
996,786 + MMJJ_RS05365 0.18 +0.3
996,812 - MMJJ_RS05365 0.29 +1.4
996,812 - MMJJ_RS05365 0.29 -1.8
996,812 - MMJJ_RS05365 0.29 -0.5
996,812 - MMJJ_RS05365 0.29 -2.4
996,825 + MMJJ_RS05365 0.35 -1.2
996,837 + MMJJ_RS05365 0.40 -1.5
996,850 + MMJJ_RS05365 0.46 -1.5
996,900 - MMJJ_RS05365 0.68 +2.2
996,900 - MMJJ_RS05365 0.68 -0.5
996,900 - MMJJ_RS05365 0.68 +1.5
996,901 + MMJJ_RS05365 0.68 +0.7
996,901 + MMJJ_RS05365 0.68 -1.9
996,901 + MMJJ_RS05365 0.68 -3.6
996,901 + MMJJ_RS05365 0.68 +1.2
996,901 + MMJJ_RS05365 0.68 +3.8
996,901 + MMJJ_RS05365 0.68 +0.3
996,903 + MMJJ_RS05365 0.69 -0.9
996,919 - MMJJ_RS05365 0.76 -1.2
996,920 + +1.4
996,947 - MMJJ_RS05365 0.89 -0.2
996,960 + -2.9
996,960 + +1.5
996,963 - -0.6
996,966 - +0.5
996,970 - -1.9
996,977 + -3.6
996,984 + +0.2
996,987 + -2.1
996,998 + +1.0
996,998 + -0.1
997,001 - -0.7
997,001 - -1.6
997,002 + -2.6
997,054 + +1.2
997,055 - -0.8
997,111 - MMJJ_RS05370 0.13 -0.0
997,112 + MMJJ_RS05370 0.13 +1.4
997,183 - MMJJ_RS05370 0.21 +1.1
997,195 - MMJJ_RS05370 0.23 +0.2
997,199 + MMJJ_RS05370 0.23 +1.1
997,258 - MMJJ_RS05370 0.30 +0.6
997,311 - MMJJ_RS05370 0.36 -0.2
997,312 + MMJJ_RS05370 0.37 +0.1
997,316 + MMJJ_RS05370 0.37 +0.4
997,316 + MMJJ_RS05370 0.37 +0.4
997,362 + MMJJ_RS05370 0.42 -0.7
997,526 - MMJJ_RS05370 0.62 -1.2
997,528 - MMJJ_RS05370 0.62 -0.4
997,544 + MMJJ_RS05370 0.64 -1.7
997,572 - MMJJ_RS05370 0.67 -1.9
997,580 + MMJJ_RS05370 0.68 +0.2
997,582 + +0.4
997,585 + MMJJ_RS05370 0.69 +0.3
997,589 - MMJJ_RS05370 0.69 +0.6
997,590 + MMJJ_RS05370 0.70 +1.4
997,595 + MMJJ_RS05370 0.70 +2.0

Or see this region's nucleotide sequence