Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05335

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS05330 and MMJJ_RS05335 are separated by 67 nucleotidesMMJJ_RS05335 and MMJJ_RS05340 are separated by 55 nucleotides MMJJ_RS05330: MMJJ_RS05330 - DNA polymerase II large subunit, at 988,990 to 992,385 _RS05330 MMJJ_RS05335: MMJJ_RS05335 - heavy metal-binding domain-containing protein, at 992,453 to 992,725 _RS05335 MMJJ_RS05340: MMJJ_RS05340 - AAA family ATPase, at 992,781 to 993,896 _RS05340 Position (kb) 992 993Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 991.678 kb on + strand, within MMJJ_RS05330at 992.289 kb on - strandat 992.383 kb on - strandat 992.403 kb on - strandat 992.403 kb on - strandat 992.406 kb on - strandat 992.406 kb on - strandat 992.407 kb on + strandat 992.407 kb on + strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.408 kb on - strandat 992.409 kb on + strandat 992.409 kb on + strandat 992.409 kb on + strandat 992.409 kb on + strandat 992.409 kb on + strandat 992.409 kb on + strandat 992.410 kb on - strandat 992.411 kb on + strandat 992.411 kb on + strandat 992.411 kb on + strandat 992.422 kb on + strandat 992.423 kb on - strandat 992.423 kb on - strandat 992.428 kb on + strandat 992.461 kb on + strandat 992.513 kb on + strand, within MMJJ_RS05335at 992.526 kb on - strand, within MMJJ_RS05335at 992.526 kb on - strand, within MMJJ_RS05335at 992.623 kb on + strand, within MMJJ_RS05335at 992.625 kb on - strand, within MMJJ_RS05335at 992.625 kb on - strand, within MMJJ_RS05335at 992.626 kb on + strand, within MMJJ_RS05335at 992.626 kb on + strand, within MMJJ_RS05335at 992.626 kb on + strand, within MMJJ_RS05335at 992.651 kb on - strand, within MMJJ_RS05335at 992.687 kb on - strand, within MMJJ_RS05335at 992.687 kb on - strand, within MMJJ_RS05335at 992.693 kb on - strand, within MMJJ_RS05335at 992.693 kb on - strand, within MMJJ_RS05335at 992.694 kb on + strand, within MMJJ_RS05335at 992.727 kb on - strandat 992.727 kb on - strandat 992.728 kb on + strandat 992.728 kb on + strandat 992.730 kb on + strandat 992.730 kb on + strandat 992.731 kb on - strandat 992.731 kb on - strandat 992.731 kb on - strandat 992.731 kb on - strandat 992.731 kb on - strandat 992.732 kb on + strandat 992.788 kb on - strandat 992.789 kb on + strandat 992.790 kb on - strandat 992.790 kb on - strandat 992.796 kb on - strandat 992.950 kb on - strand, within MMJJ_RS05340at 992.951 kb on + strand, within MMJJ_RS05340at 992.951 kb on + strand, within MMJJ_RS05340at 992.977 kb on + strand, within MMJJ_RS05340at 992.996 kb on + strand, within MMJJ_RS05340at 993.152 kb on - strand, within MMJJ_RS05340at 993.165 kb on - strand, within MMJJ_RS05340at 993.168 kb on - strand, within MMJJ_RS05340at 993.177 kb on - strand, within MMJJ_RS05340at 993.177 kb on - strand, within MMJJ_RS05340at 993.178 kb on + strand, within MMJJ_RS05340at 993.178 kb on + strand, within MMJJ_RS05340at 993.236 kb on - strand, within MMJJ_RS05340at 993.240 kb on - strand, within MMJJ_RS05340at 993.240 kb on - strand, within MMJJ_RS05340at 993.255 kb on + strand, within MMJJ_RS05340at 993.320 kb on - strand, within MMJJ_RS05340at 993.339 kb on - strand, within MMJJ_RS05340at 993.339 kb on - strand, within MMJJ_RS05340at 993.340 kb on + strand, within MMJJ_RS05340at 993.340 kb on + strand, within MMJJ_RS05340at 993.352 kb on + strand, within MMJJ_RS05340at 993.418 kb on + strand, within MMJJ_RS05340at 993.418 kb on + strand, within MMJJ_RS05340at 993.447 kb on - strand, within MMJJ_RS05340at 993.466 kb on - strand, within MMJJ_RS05340at 993.466 kb on - strand, within MMJJ_RS05340at 993.471 kb on - strand, within MMJJ_RS05340at 993.561 kb on + strand, within MMJJ_RS05340at 993.579 kb on + strand, within MMJJ_RS05340at 993.583 kb on + strand, within MMJJ_RS05340at 993.635 kb on - strand, within MMJJ_RS05340at 993.636 kb on + strand, within MMJJ_RS05340at 993.636 kb on + strand, within MMJJ_RS05340at 993.636 kb on + strand, within MMJJ_RS05340at 993.670 kb on + strand, within MMJJ_RS05340at 993.670 kb on + strand, within MMJJ_RS05340at 993.673 kb on - strand, within MMJJ_RS05340at 993.673 kb on - strand, within MMJJ_RS05340at 993.674 kb on + strand, within MMJJ_RS05340at 993.718 kb on - strand, within MMJJ_RS05340at 993.725 kb on - strand, within MMJJ_RS05340

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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991,678 + MMJJ_RS05330 0.79 +1.4
992,289 - +1.4
992,383 - -1.3
992,403 - +0.1
992,403 - -0.2
992,406 - -1.8
992,406 - +1.4
992,407 + -2.5
992,407 + +0.5
992,408 - -1.0
992,408 - +1.5
992,408 - +0.4
992,408 - +0.8
992,408 - +0.7
992,408 - +4.4
992,408 - +0.3
992,408 - -2.4
992,408 - -1.0
992,408 - -0.6
992,408 - +1.5
992,408 - +0.1
992,409 + -1.7
992,409 + -1.3
992,409 + +2.2
992,409 + -2.7
992,409 + +1.4
992,409 + +0.3
992,410 - -2.1
992,411 + +1.6
992,411 + +3.1
992,411 + -1.9
992,422 + -2.0
992,423 - -0.3
992,423 - -2.6
992,428 + -3.7
992,461 + -0.7
992,513 + MMJJ_RS05335 0.22 +0.3
992,526 - MMJJ_RS05335 0.27 +0.6
992,526 - MMJJ_RS05335 0.27 +2.6
992,623 + MMJJ_RS05335 0.62 +0.5
992,625 - MMJJ_RS05335 0.63 +1.7
992,625 - MMJJ_RS05335 0.63 +1.1
992,626 + MMJJ_RS05335 0.63 +0.7
992,626 + MMJJ_RS05335 0.63 -2.2
992,626 + MMJJ_RS05335 0.63 -3.1
992,651 - MMJJ_RS05335 0.73 -1.2
992,687 - MMJJ_RS05335 0.86 +1.9
992,687 - MMJJ_RS05335 0.86 +4.0
992,693 - MMJJ_RS05335 0.88 +4.8
992,693 - MMJJ_RS05335 0.88 -2.0
992,694 + MMJJ_RS05335 0.88 +1.0
992,727 - -1.4
992,727 - +0.6
992,728 + +0.7
992,728 + +1.2
992,730 + +0.5
992,730 + -1.9
992,731 - +1.8
992,731 - -0.0
992,731 - -1.1
992,731 - +1.6
992,731 - +2.6
992,732 + -0.7
992,788 - +2.7
992,789 + -1.1
992,790 - +0.5
992,790 - +0.2
992,796 - +2.8
992,950 - MMJJ_RS05340 0.15 -1.4
992,951 + MMJJ_RS05340 0.15 +0.7
992,951 + MMJJ_RS05340 0.15 -2.1
992,977 + MMJJ_RS05340 0.18 -2.4
992,996 + MMJJ_RS05340 0.19 +1.9
993,152 - MMJJ_RS05340 0.33 +0.4
993,165 - MMJJ_RS05340 0.34 -0.7
993,168 - MMJJ_RS05340 0.35 -3.4
993,177 - MMJJ_RS05340 0.35 +2.6
993,177 - MMJJ_RS05340 0.35 +1.6
993,178 + MMJJ_RS05340 0.36 +2.7
993,178 + MMJJ_RS05340 0.36 -1.6
993,236 - MMJJ_RS05340 0.41 -1.0
993,240 - MMJJ_RS05340 0.41 +2.9
993,240 - MMJJ_RS05340 0.41 -1.8
993,255 + MMJJ_RS05340 0.42 +2.9
993,320 - MMJJ_RS05340 0.48 -0.3
993,339 - MMJJ_RS05340 0.50 +0.4
993,339 - MMJJ_RS05340 0.50 -2.2
993,340 + MMJJ_RS05340 0.50 +0.7
993,340 + MMJJ_RS05340 0.50 -0.4
993,352 + MMJJ_RS05340 0.51 -2.1
993,418 + MMJJ_RS05340 0.57 -1.7
993,418 + MMJJ_RS05340 0.57 +1.4
993,447 - MMJJ_RS05340 0.60 -2.2
993,466 - MMJJ_RS05340 0.61 +0.7
993,466 - MMJJ_RS05340 0.61 +0.5
993,471 - MMJJ_RS05340 0.62 +1.3
993,561 + MMJJ_RS05340 0.70 -2.2
993,579 + MMJJ_RS05340 0.72 -2.2
993,583 + MMJJ_RS05340 0.72 -0.9
993,635 - MMJJ_RS05340 0.77 +2.4
993,636 + MMJJ_RS05340 0.77 -1.4
993,636 + MMJJ_RS05340 0.77 -1.8
993,636 + MMJJ_RS05340 0.77 -1.4
993,670 + MMJJ_RS05340 0.80 -0.4
993,670 + MMJJ_RS05340 0.80 +2.7
993,673 - MMJJ_RS05340 0.80 +2.6
993,673 - MMJJ_RS05340 0.80 -0.9
993,674 + MMJJ_RS05340 0.80 -1.6
993,718 - MMJJ_RS05340 0.84 +4.3
993,725 - MMJJ_RS05340 0.85 -0.2

Or see this region's nucleotide sequence