Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05180 and MMJJ_RS05185 are separated by 37 nucleotides MMJJ_RS05185 and MMJJ_RS05190 are separated by 48 nucleotides MMJJ_RS05190 and MMJJ_RS05195 are separated by 38 nucleotides MMJJ_RS05195 and MMJJ_RS05200 are separated by 57 nucleotides
MMJJ_RS05180: MMJJ_RS05180 - phosphoribosyl-ATP diphosphatase, at 958,545 to 958,835
_RS05180
MMJJ_RS05185: MMJJ_RS05185 - 6,7-dimethyl-8-ribityllumazine synthase, at 958,873 to 959,286
_RS05185
MMJJ_RS05190: MMJJ_RS05190 - gamma carbonic anhydrase family protein, at 959,335 to 959,790
_RS05190
MMJJ_RS05195: MMJJ_RS05195 - hypothetical protein, at 959,829 to 960,101
_RS05195
MMJJ_RS05200: MMJJ_RS05200 - TIGR04013 family B12-binding domain/radical SAM domain-containing protein, at 960,159 to 961,268
_RS05200
Position (kb) 959
960
961 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 959.311 kb on + strand at 959.314 kb on + strand at 959.351 kb on + strand at 959.360 kb on - strand at 959.389 kb on - strand, within MMJJ_RS05190 at 959.413 kb on - strand, within MMJJ_RS05190 at 959.445 kb on - strand, within MMJJ_RS05190 at 959.524 kb on - strand, within MMJJ_RS05190 at 959.525 kb on + strand, within MMJJ_RS05190 at 959.551 kb on - strand, within MMJJ_RS05190 at 959.551 kb on - strand, within MMJJ_RS05190 at 959.680 kb on - strand, within MMJJ_RS05190 at 959.691 kb on - strand, within MMJJ_RS05190 at 959.692 kb on + strand, within MMJJ_RS05190 at 959.698 kb on + strand, within MMJJ_RS05190 at 959.711 kb on + strand, within MMJJ_RS05190 at 959.727 kb on - strand, within MMJJ_RS05190 at 959.728 kb on + strand, within MMJJ_RS05190 at 959.791 kb on - strand at 959.792 kb on + strand at 959.793 kb on - strand at 959.802 kb on - strand at 959.802 kb on - strand at 959.815 kb on - strand at 959.901 kb on - strand, within MMJJ_RS05195 at 959.901 kb on - strand, within MMJJ_RS05195 at 959.902 kb on + strand, within MMJJ_RS05195 at 959.993 kb on + strand, within MMJJ_RS05195 at 960.001 kb on - strand, within MMJJ_RS05195 at 960.001 kb on - strand, within MMJJ_RS05195 at 960.006 kb on + strand, within MMJJ_RS05195 at 960.053 kb on - strand, within MMJJ_RS05195 at 960.064 kb on - strand, within MMJJ_RS05195 at 960.077 kb on - strand at 960.077 kb on - strand at 960.079 kb on - strand at 960.079 kb on - strand at 960.080 kb on + strand at 960.081 kb on - strand at 960.081 kb on - strand at 960.081 kb on - strand at 960.081 kb on - strand at 960.081 kb on - strand at 960.081 kb on - strand at 960.081 kb on - strand at 960.082 kb on + strand at 960.082 kb on + strand at 960.082 kb on + strand at 960.082 kb on + strand at 960.082 kb on + strand at 960.082 kb on + strand at 960.082 kb on + strand at 960.131 kb on - strand at 960.131 kb on - strand at 960.132 kb on + strand at 960.133 kb on - strand at 960.134 kb on + strand at 960.135 kb on - strand at 960.135 kb on - strand at 960.136 kb on + strand at 960.136 kb on + strand at 960.136 kb on + strand at 960.148 kb on - strand at 960.148 kb on - strand at 960.148 kb on - strand at 960.148 kb on - strand at 960.148 kb on - strand at 960.148 kb on - strand at 960.149 kb on + strand at 960.149 kb on + strand at 960.152 kb on - strand at 960.152 kb on - strand at 960.158 kb on - strand at 960.170 kb on - strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.192 kb on - strand at 960.193 kb on + strand at 960.193 kb on + strand at 960.193 kb on + strand at 960.198 kb on + strand at 960.198 kb on + strand at 960.198 kb on + strand at 960.208 kb on - strand at 960.209 kb on + strand at 960.209 kb on + strand at 960.209 kb on + strand at 960.210 kb on - strand at 960.217 kb on - strand at 960.221 kb on + strand at 960.221 kb on + strand at 960.232 kb on - strand at 960.232 kb on - strand at 960.283 kb on - strand, within MMJJ_RS05200 at 960.289 kb on + strand, within MMJJ_RS05200 at 960.302 kb on - strand, within MMJJ_RS05200 at 960.302 kb on - strand, within MMJJ_RS05200 at 960.331 kb on - strand, within MMJJ_RS05200 at 960.332 kb on + strand, within MMJJ_RS05200 at 960.362 kb on - strand, within MMJJ_RS05200 at 960.362 kb on - strand, within MMJJ_RS05200 at 960.364 kb on - strand, within MMJJ_RS05200 at 960.364 kb on - strand, within MMJJ_RS05200 at 960.408 kb on + strand, within MMJJ_RS05200 at 960.433 kb on - strand, within MMJJ_RS05200 at 960.436 kb on - strand, within MMJJ_RS05200 at 960.473 kb on + strand, within MMJJ_RS05200 at 960.512 kb on - strand, within MMJJ_RS05200 at 960.579 kb on + strand, within MMJJ_RS05200 at 960.594 kb on - strand, within MMJJ_RS05200 at 960.594 kb on - strand, within MMJJ_RS05200 at 960.594 kb on - strand, within MMJJ_RS05200 at 960.594 kb on - strand, within MMJJ_RS05200 at 960.602 kb on - strand at 960.603 kb on + strand, within MMJJ_RS05200 at 960.626 kb on + strand, within MMJJ_RS05200 at 960.626 kb on + strand, within MMJJ_RS05200 at 960.626 kb on + strand, within MMJJ_RS05200 at 960.638 kb on - strand, within MMJJ_RS05200 at 960.641 kb on + strand, within MMJJ_RS05200 at 960.647 kb on - strand, within MMJJ_RS05200 at 960.647 kb on - strand, within MMJJ_RS05200 at 960.647 kb on - strand, within MMJJ_RS05200 at 960.648 kb on + strand, within MMJJ_RS05200 at 960.648 kb on + strand, within MMJJ_RS05200 at 960.654 kb on + strand, within MMJJ_RS05200 at 960.654 kb on + strand, within MMJJ_RS05200 at 960.663 kb on + strand, within MMJJ_RS05200 at 960.703 kb on - strand, within MMJJ_RS05200 at 960.723 kb on - strand, within MMJJ_RS05200 at 960.724 kb on + strand, within MMJJ_RS05200 at 960.753 kb on + strand, within MMJJ_RS05200 at 960.832 kb on - strand, within MMJJ_RS05200 at 960.833 kb on + strand, within MMJJ_RS05200 at 960.869 kb on + strand, within MMJJ_RS05200 at 960.869 kb on + strand, within MMJJ_RS05200 at 960.875 kb on - strand, within MMJJ_RS05200 at 960.875 kb on - strand, within MMJJ_RS05200 at 960.894 kb on - strand, within MMJJ_RS05200 at 960.941 kb on - strand, within MMJJ_RS05200 at 960.941 kb on - strand, within MMJJ_RS05200 at 960.942 kb on + strand, within MMJJ_RS05200 at 960.942 kb on + strand, within MMJJ_RS05200 at 960.942 kb on + strand, within MMJJ_RS05200 at 960.943 kb on - strand, within MMJJ_RS05200 at 960.943 kb on - strand, within MMJJ_RS05200 at 960.944 kb on + strand, within MMJJ_RS05200 at 961.007 kb on + strand, within MMJJ_RS05200 at 961.026 kb on + strand, within MMJJ_RS05200 at 961.086 kb on - strand, within MMJJ_RS05200 at 961.086 kb on - strand, within MMJJ_RS05200 at 961.087 kb on + strand, within MMJJ_RS05200 at 961.091 kb on - strand, within MMJJ_RS05200 at 961.091 kb on - strand, within MMJJ_RS05200 at 961.093 kb on - strand, within MMJJ_RS05200
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 959,311 + -2.3 959,314 + -1.6 959,351 + -1.3 959,360 - -3.0 959,389 - MMJJ_RS05190 0.12 -0.2 959,413 - MMJJ_RS05190 0.17 -1.3 959,445 - MMJJ_RS05190 0.24 -3.0 959,524 - MMJJ_RS05190 0.41 -0.6 959,525 + MMJJ_RS05190 0.42 -3.1 959,551 - MMJJ_RS05190 0.47 -2.0 959,551 - MMJJ_RS05190 0.47 -2.1 959,680 - MMJJ_RS05190 0.76 -1.3 959,691 - MMJJ_RS05190 0.78 -2.4 959,692 + MMJJ_RS05190 0.78 -1.6 959,698 + MMJJ_RS05190 0.80 -1.6 959,711 + MMJJ_RS05190 0.82 -2.0 959,727 - MMJJ_RS05190 0.86 -0.8 959,728 + MMJJ_RS05190 0.86 -1.2 959,791 - -3.1 959,792 + +1.4 959,793 - -2.5 959,802 - -2.0 959,802 - -1.7 959,815 - -1.8 959,901 - MMJJ_RS05195 0.26 -1.8 959,901 - MMJJ_RS05195 0.26 -0.4 959,902 + MMJJ_RS05195 0.27 +0.2 959,993 + MMJJ_RS05195 0.60 -1.5 960,001 - MMJJ_RS05195 0.63 -1.9 960,001 - MMJJ_RS05195 0.63 -2.8 960,006 + MMJJ_RS05195 0.65 -0.4 960,053 - MMJJ_RS05195 0.82 -2.1 960,064 - MMJJ_RS05195 0.86 -1.7 960,077 - -1.3 960,077 - +0.4 960,079 - -3.7 960,079 - +0.9 960,080 + -0.2 960,081 - -1.2 960,081 - -1.0 960,081 - -1.9 960,081 - +0.5 960,081 - -2.7 960,081 - +0.5 960,081 - -1.3 960,082 + -1.8 960,082 + -1.6 960,082 + -1.7 960,082 + +0.4 960,082 + -3.6 960,082 + +0.0 960,082 + +0.2 960,131 - +0.3 960,131 - +1.0 960,132 + -1.6 960,133 - +2.0 960,134 + -3.0 960,135 - -1.2 960,135 - -0.6 960,136 + -1.3 960,136 + -0.2 960,136 + -2.4 960,148 - -0.9 960,148 - -1.6 960,148 - -2.2 960,148 - +1.1 960,148 - +0.6 960,148 - -0.6 960,149 + -2.6 960,149 + -2.6 960,152 - -1.6 960,152 - +0.0 960,158 - +1.7 960,170 - -2.1 960,192 - -0.2 960,192 - +3.4 960,192 - -0.9 960,193 + -1.2 960,193 + +3.5 960,193 + +0.4 960,198 + -0.5 960,198 + +2.6 960,198 + +1.2 960,208 - -0.3 960,209 + -3.1 960,209 + +1.0 960,209 + -2.2 960,210 - -1.4 960,217 - +0.7 960,221 + +2.3 960,221 + -2.6 960,232 - +1.4 960,232 - -1.5 960,283 - MMJJ_RS05200 0.11 +3.8 960,289 + MMJJ_RS05200 0.12 -1.3 960,302 - MMJJ_RS05200 0.13 +4.8 960,302 - MMJJ_RS05200 0.13 -2.3 960,331 - MMJJ_RS05200 0.15 +3.5 960,332 + MMJJ_RS05200 0.16 -1.4 960,362 - MMJJ_RS05200 0.18 -0.1 960,362 - MMJJ_RS05200 0.18 -1.6 960,364 - MMJJ_RS05200 0.18 +1.4 960,364 - MMJJ_RS05200 0.18 +1.3 960,408 + MMJJ_RS05200 0.22 +2.2 960,433 - MMJJ_RS05200 0.25 +2.5 960,436 - MMJJ_RS05200 0.25 -1.4 960,473 + MMJJ_RS05200 0.28 +0.0 960,512 - MMJJ_RS05200 0.32 +0.1 960,579 + MMJJ_RS05200 0.38 +0.5 960,594 - MMJJ_RS05200 0.39 +0.4 960,594 - MMJJ_RS05200 0.39 +0.2 960,594 - MMJJ_RS05200 0.39 +1.3 960,594 - MMJJ_RS05200 0.39 +0.1 960,602 - -0.2 960,603 + MMJJ_RS05200 0.40 -1.4 960,626 + MMJJ_RS05200 0.42 +2.4 960,626 + MMJJ_RS05200 0.42 -0.5 960,626 + MMJJ_RS05200 0.42 -0.4 960,638 - MMJJ_RS05200 0.43 +0.8 960,641 + MMJJ_RS05200 0.43 +2.7 960,647 - MMJJ_RS05200 0.44 +3.4 960,647 - MMJJ_RS05200 0.44 +4.5 960,647 - MMJJ_RS05200 0.44 -1.4 960,648 + MMJJ_RS05200 0.44 +0.5 960,648 + MMJJ_RS05200 0.44 -2.8 960,654 + MMJJ_RS05200 0.45 -2.5 960,654 + MMJJ_RS05200 0.45 +1.1 960,663 + MMJJ_RS05200 0.45 +1.5 960,703 - MMJJ_RS05200 0.49 +2.7 960,723 - MMJJ_RS05200 0.51 -0.5 960,724 + MMJJ_RS05200 0.51 -2.6 960,753 + MMJJ_RS05200 0.54 +0.3 960,832 - MMJJ_RS05200 0.61 -2.1 960,833 + MMJJ_RS05200 0.61 -0.9 960,869 + MMJJ_RS05200 0.64 +0.0 960,869 + MMJJ_RS05200 0.64 +1.9 960,875 - MMJJ_RS05200 0.65 -1.4 960,875 - MMJJ_RS05200 0.65 -0.1 960,894 - MMJJ_RS05200 0.66 +3.8 960,941 - MMJJ_RS05200 0.70 -2.7 960,941 - MMJJ_RS05200 0.70 +0.6 960,942 + MMJJ_RS05200 0.71 -4.0 960,942 + MMJJ_RS05200 0.71 +2.0 960,942 + MMJJ_RS05200 0.71 -2.1 960,943 - MMJJ_RS05200 0.71 -2.5 960,943 - MMJJ_RS05200 0.71 -0.1 960,944 + MMJJ_RS05200 0.71 +1.6 961,007 + MMJJ_RS05200 0.76 +2.8 961,026 + MMJJ_RS05200 0.78 +1.5 961,086 - MMJJ_RS05200 0.84 +1.0 961,086 - MMJJ_RS05200 0.84 +0.4 961,087 + MMJJ_RS05200 0.84 -1.4 961,091 - MMJJ_RS05200 0.84 -0.1 961,091 - MMJJ_RS05200 0.84 -2.9 961,093 - MMJJ_RS05200 0.84 -2.6
Or see this region's nucleotide sequence