Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05160 and MMJJ_RS05165 are separated by 13 nucleotides MMJJ_RS05165 and MMJJ_RS05170 overlap by 4 nucleotides MMJJ_RS05170 and MMJJ_RS05175 are separated by 130 nucleotides
MMJJ_RS05160: MMJJ_RS05160 - RNA-binding protein, at 955,663 to 956,142
_RS05160
MMJJ_RS05165: MMJJ_RS05165 - class I SAM-dependent methyltransferase, at 956,156 to 956,764
_RS05165
MMJJ_RS05170: MMJJ_RS05170 - Nif3-like dinuclear metal center hexameric protein, at 956,761 to 957,501
_RS05170
MMJJ_RS05175: MMJJ_RS05175 - CBS domain-containing protein, at 957,632 to 958,543
_RS05175
Position (kb) 956
957
958 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 955.850 kb on - strand at 955.851 kb on + strand, within MMJJ_RS05160 at 955.902 kb on - strand, within MMJJ_RS05160 at 955.907 kb on - strand, within MMJJ_RS05160 at 955.985 kb on - strand, within MMJJ_RS05160 at 956.161 kb on + strand at 956.190 kb on - strand at 956.191 kb on + strand at 956.203 kb on - strand at 956.208 kb on - strand at 956.239 kb on + strand, within MMJJ_RS05165 at 956.342 kb on + strand, within MMJJ_RS05165 at 956.355 kb on - strand, within MMJJ_RS05165 at 956.355 kb on - strand, within MMJJ_RS05165 at 956.428 kb on - strand, within MMJJ_RS05165 at 956.428 kb on - strand, within MMJJ_RS05165 at 956.429 kb on + strand, within MMJJ_RS05165 at 956.452 kb on - strand, within MMJJ_RS05165 at 956.473 kb on + strand, within MMJJ_RS05165 at 956.478 kb on - strand, within MMJJ_RS05165 at 956.492 kb on - strand, within MMJJ_RS05165 at 956.493 kb on + strand, within MMJJ_RS05165 at 956.587 kb on + strand, within MMJJ_RS05165 at 956.596 kb on + strand, within MMJJ_RS05165 at 956.603 kb on - strand, within MMJJ_RS05165 at 956.603 kb on - strand, within MMJJ_RS05165 at 956.604 kb on + strand, within MMJJ_RS05165 at 956.660 kb on + strand, within MMJJ_RS05165 at 956.737 kb on + strand at 956.781 kb on + strand at 956.852 kb on - strand, within MMJJ_RS05170 at 957.017 kb on - strand, within MMJJ_RS05170 at 957.020 kb on - strand, within MMJJ_RS05170 at 957.020 kb on - strand, within MMJJ_RS05170 at 957.025 kb on + strand, within MMJJ_RS05170 at 957.054 kb on - strand, within MMJJ_RS05170 at 957.054 kb on - strand, within MMJJ_RS05170 at 957.067 kb on + strand, within MMJJ_RS05170 at 957.085 kb on + strand, within MMJJ_RS05170 at 957.095 kb on - strand, within MMJJ_RS05170 at 957.108 kb on - strand, within MMJJ_RS05170 at 957.134 kb on + strand, within MMJJ_RS05170 at 957.184 kb on + strand, within MMJJ_RS05170 at 957.207 kb on - strand, within MMJJ_RS05170 at 957.208 kb on + strand, within MMJJ_RS05170 at 957.237 kb on - strand, within MMJJ_RS05170 at 957.245 kb on - strand, within MMJJ_RS05170 at 957.245 kb on - strand, within MMJJ_RS05170 at 957.245 kb on - strand, within MMJJ_RS05170 at 957.245 kb on - strand, within MMJJ_RS05170 at 957.247 kb on - strand, within MMJJ_RS05170 at 957.247 kb on - strand, within MMJJ_RS05170 at 957.248 kb on + strand, within MMJJ_RS05170 at 957.248 kb on + strand, within MMJJ_RS05170 at 957.248 kb on + strand, within MMJJ_RS05170 at 957.248 kb on + strand, within MMJJ_RS05170 at 957.307 kb on + strand, within MMJJ_RS05170 at 957.309 kb on - strand, within MMJJ_RS05170 at 957.313 kb on - strand, within MMJJ_RS05170 at 957.313 kb on - strand, within MMJJ_RS05170 at 957.313 kb on - strand, within MMJJ_RS05170 at 957.313 kb on - strand, within MMJJ_RS05170 at 957.313 kb on - strand, within MMJJ_RS05170 at 957.314 kb on + strand, within MMJJ_RS05170 at 957.337 kb on - strand, within MMJJ_RS05170 at 957.337 kb on - strand, within MMJJ_RS05170 at 957.386 kb on - strand, within MMJJ_RS05170 at 957.387 kb on + strand, within MMJJ_RS05170 at 957.455 kb on + strand at 957.455 kb on + strand at 957.505 kb on - strand at 957.533 kb on + strand at 957.536 kb on - strand at 957.536 kb on - strand at 957.555 kb on + strand at 957.555 kb on + strand at 957.578 kb on - strand at 957.578 kb on - strand at 957.579 kb on + strand at 957.579 kb on + strand at 957.579 kb on + strand at 957.579 kb on + strand at 957.579 kb on + strand at 957.579 kb on + strand at 957.579 kb on + strand at 957.580 kb on - strand at 957.580 kb on - strand at 957.580 kb on - strand at 957.580 kb on - strand at 957.580 kb on - strand at 957.581 kb on + strand at 957.581 kb on + strand at 957.581 kb on + strand at 957.581 kb on + strand at 957.581 kb on + strand at 957.582 kb on - strand at 957.582 kb on - strand at 957.582 kb on - strand at 957.583 kb on + strand at 957.594 kb on - strand at 957.594 kb on - strand at 957.595 kb on + strand at 957.596 kb on - strand at 957.597 kb on + strand at 957.597 kb on + strand at 957.607 kb on - strand at 957.627 kb on - strand at 957.627 kb on - strand at 957.628 kb on + strand at 957.628 kb on + strand at 957.631 kb on - strand at 957.641 kb on + strand at 957.641 kb on + strand at 957.641 kb on + strand at 957.645 kb on - strand at 957.645 kb on - strand at 957.646 kb on + strand at 957.661 kb on + strand at 957.727 kb on - strand, within MMJJ_RS05175 at 957.733 kb on + strand, within MMJJ_RS05175 at 957.737 kb on + strand, within MMJJ_RS05175 at 957.784 kb on + strand, within MMJJ_RS05175 at 957.843 kb on + strand, within MMJJ_RS05175 at 957.919 kb on - strand, within MMJJ_RS05175 at 957.919 kb on - strand, within MMJJ_RS05175 at 957.919 kb on - strand, within MMJJ_RS05175 at 957.920 kb on + strand, within MMJJ_RS05175 at 957.950 kb on + strand, within MMJJ_RS05175 at 957.981 kb on + strand, within MMJJ_RS05175 at 958.087 kb on - strand, within MMJJ_RS05175 at 958.087 kb on - strand, within MMJJ_RS05175 at 958.089 kb on - strand, within MMJJ_RS05175 at 958.089 kb on - strand, within MMJJ_RS05175 at 958.090 kb on + strand, within MMJJ_RS05175 at 958.097 kb on + strand, within MMJJ_RS05175 at 958.113 kb on - strand, within MMJJ_RS05175 at 958.114 kb on + strand, within MMJJ_RS05175 at 958.114 kb on + strand, within MMJJ_RS05175 at 958.117 kb on + strand, within MMJJ_RS05175 at 958.117 kb on + strand, within MMJJ_RS05175 at 958.117 kb on + strand, within MMJJ_RS05175 at 958.161 kb on - strand, within MMJJ_RS05175 at 958.161 kb on - strand, within MMJJ_RS05175 at 958.161 kb on - strand, within MMJJ_RS05175 at 958.178 kb on - strand, within MMJJ_RS05175 at 958.178 kb on - strand, within MMJJ_RS05175 at 958.178 kb on - strand, within MMJJ_RS05175 at 958.178 kb on - strand, within MMJJ_RS05175 at 958.179 kb on + strand, within MMJJ_RS05175 at 958.182 kb on - strand, within MMJJ_RS05175 at 958.183 kb on + strand, within MMJJ_RS05175 at 958.183 kb on + strand, within MMJJ_RS05175 at 958.183 kb on + strand, within MMJJ_RS05175 at 958.183 kb on + strand, within MMJJ_RS05175 at 958.235 kb on + strand, within MMJJ_RS05175 at 958.345 kb on + strand, within MMJJ_RS05175 at 958.386 kb on - strand, within MMJJ_RS05175 at 958.418 kb on + strand at 958.484 kb on + strand at 958.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 955,850 - +0.4 955,851 + MMJJ_RS05160 0.39 +1.5 955,902 - MMJJ_RS05160 0.50 +2.9 955,907 - MMJJ_RS05160 0.51 +1.0 955,985 - MMJJ_RS05160 0.67 -1.8 956,161 + -1.0 956,190 - +1.8 956,191 + -2.3 956,203 - +0.0 956,208 - +0.8 956,239 + MMJJ_RS05165 0.14 -0.4 956,342 + MMJJ_RS05165 0.31 +1.4 956,355 - MMJJ_RS05165 0.33 -0.4 956,355 - MMJJ_RS05165 0.33 +0.0 956,428 - MMJJ_RS05165 0.45 +0.7 956,428 - MMJJ_RS05165 0.45 -0.8 956,429 + MMJJ_RS05165 0.45 -0.2 956,452 - MMJJ_RS05165 0.49 -2.5 956,473 + MMJJ_RS05165 0.52 -1.5 956,478 - MMJJ_RS05165 0.53 -0.2 956,492 - MMJJ_RS05165 0.55 +1.0 956,493 + MMJJ_RS05165 0.55 +3.3 956,587 + MMJJ_RS05165 0.71 -0.0 956,596 + MMJJ_RS05165 0.72 -2.9 956,603 - MMJJ_RS05165 0.73 -0.5 956,603 - MMJJ_RS05165 0.73 -0.8 956,604 + MMJJ_RS05165 0.74 -1.3 956,660 + MMJJ_RS05165 0.83 +0.2 956,737 + -1.4 956,781 + -1.6 956,852 - MMJJ_RS05170 0.12 -1.4 957,017 - MMJJ_RS05170 0.35 +0.1 957,020 - MMJJ_RS05170 0.35 -1.7 957,020 - MMJJ_RS05170 0.35 -0.6 957,025 + MMJJ_RS05170 0.36 -0.9 957,054 - MMJJ_RS05170 0.40 -1.7 957,054 - MMJJ_RS05170 0.40 +0.7 957,067 + MMJJ_RS05170 0.41 -2.2 957,085 + MMJJ_RS05170 0.44 -1.8 957,095 - MMJJ_RS05170 0.45 -0.9 957,108 - MMJJ_RS05170 0.47 +0.1 957,134 + MMJJ_RS05170 0.50 +0.1 957,184 + MMJJ_RS05170 0.57 -3.5 957,207 - MMJJ_RS05170 0.60 -1.2 957,208 + MMJJ_RS05170 0.60 +0.6 957,237 - MMJJ_RS05170 0.64 -1.2 957,245 - MMJJ_RS05170 0.65 -0.9 957,245 - MMJJ_RS05170 0.65 -3.3 957,245 - MMJJ_RS05170 0.65 -4.3 957,245 - MMJJ_RS05170 0.65 -1.5 957,247 - MMJJ_RS05170 0.66 -0.2 957,247 - MMJJ_RS05170 0.66 -3.1 957,248 + MMJJ_RS05170 0.66 -0.9 957,248 + MMJJ_RS05170 0.66 -1.2 957,248 + MMJJ_RS05170 0.66 -1.4 957,248 + MMJJ_RS05170 0.66 -1.0 957,307 + MMJJ_RS05170 0.74 -2.0 957,309 - MMJJ_RS05170 0.74 -1.7 957,313 - MMJJ_RS05170 0.74 +0.2 957,313 - MMJJ_RS05170 0.74 -0.0 957,313 - MMJJ_RS05170 0.74 -2.3 957,313 - MMJJ_RS05170 0.74 -0.6 957,313 - MMJJ_RS05170 0.74 -3.3 957,314 + MMJJ_RS05170 0.75 -1.3 957,337 - MMJJ_RS05170 0.78 -2.1 957,337 - MMJJ_RS05170 0.78 -1.5 957,386 - MMJJ_RS05170 0.84 -0.2 957,387 + MMJJ_RS05170 0.84 -1.6 957,455 + -2.9 957,455 + -1.1 957,505 - +1.5 957,533 + -0.4 957,536 - -1.6 957,536 - -1.1 957,555 + -0.6 957,555 + -0.9 957,578 - -1.9 957,578 - -0.7 957,579 + -0.2 957,579 + -0.6 957,579 + -1.2 957,579 + -0.7 957,579 + +0.8 957,579 + -1.3 957,579 + -0.9 957,580 - +1.4 957,580 - -1.9 957,580 - -2.5 957,580 - +0.6 957,580 - +1.4 957,581 + -1.0 957,581 + -0.7 957,581 + -1.0 957,581 + +2.2 957,581 + -0.9 957,582 - +1.4 957,582 - -0.2 957,582 - -3.3 957,583 + -2.2 957,594 - -0.6 957,594 - -1.6 957,595 + +1.8 957,596 - +0.4 957,597 + -1.8 957,597 + +2.1 957,607 - -2.1 957,627 - +0.4 957,627 - -0.2 957,628 + -0.4 957,628 + -3.8 957,631 - -1.5 957,641 + -1.9 957,641 + +0.4 957,641 + -1.3 957,645 - +3.6 957,645 - -1.9 957,646 + -1.2 957,661 + +1.8 957,727 - MMJJ_RS05175 0.10 -2.1 957,733 + MMJJ_RS05175 0.11 -2.4 957,737 + MMJJ_RS05175 0.12 -0.2 957,784 + MMJJ_RS05175 0.17 -1.2 957,843 + MMJJ_RS05175 0.23 -1.2 957,919 - MMJJ_RS05175 0.31 -2.4 957,919 - MMJJ_RS05175 0.31 -0.9 957,919 - MMJJ_RS05175 0.31 -2.9 957,920 + MMJJ_RS05175 0.32 +0.4 957,950 + MMJJ_RS05175 0.35 -1.6 957,981 + MMJJ_RS05175 0.38 +0.3 958,087 - MMJJ_RS05175 0.50 -0.2 958,087 - MMJJ_RS05175 0.50 -0.8 958,089 - MMJJ_RS05175 0.50 -0.6 958,089 - MMJJ_RS05175 0.50 -1.3 958,090 + MMJJ_RS05175 0.50 -0.6 958,097 + MMJJ_RS05175 0.51 -0.9 958,113 - MMJJ_RS05175 0.53 -3.3 958,114 + MMJJ_RS05175 0.53 -1.4 958,114 + MMJJ_RS05175 0.53 -0.2 958,117 + MMJJ_RS05175 0.53 -1.1 958,117 + MMJJ_RS05175 0.53 -2.9 958,117 + MMJJ_RS05175 0.53 -2.8 958,161 - MMJJ_RS05175 0.58 -1.4 958,161 - MMJJ_RS05175 0.58 +2.3 958,161 - MMJJ_RS05175 0.58 +0.3 958,178 - MMJJ_RS05175 0.60 +0.3 958,178 - MMJJ_RS05175 0.60 -2.0 958,178 - MMJJ_RS05175 0.60 -2.9 958,178 - MMJJ_RS05175 0.60 -0.2 958,179 + MMJJ_RS05175 0.60 -0.2 958,182 - MMJJ_RS05175 0.60 +0.4 958,183 + MMJJ_RS05175 0.60 -0.6 958,183 + MMJJ_RS05175 0.60 +0.2 958,183 + MMJJ_RS05175 0.60 -2.3 958,183 + MMJJ_RS05175 0.60 -1.3 958,235 + MMJJ_RS05175 0.66 -0.8 958,345 + MMJJ_RS05175 0.78 -0.8 958,386 - MMJJ_RS05175 0.83 -1.1 958,418 + -0.2 958,484 + -3.5 958,495 + +1.2
Or see this region's nucleotide sequence