Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05155 and MMJJ_RS05160 are separated by 107 nucleotides MMJJ_RS05160 and MMJJ_RS05165 are separated by 13 nucleotides MMJJ_RS05165 and MMJJ_RS05170 overlap by 4 nucleotides
MMJJ_RS05155: MMJJ_RS05155 - 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH, at 954,476 to 955,555
_RS05155
MMJJ_RS05160: MMJJ_RS05160 - RNA-binding protein, at 955,663 to 956,142
_RS05160
MMJJ_RS05165: MMJJ_RS05165 - class I SAM-dependent methyltransferase, at 956,156 to 956,764
_RS05165
MMJJ_RS05170: MMJJ_RS05170 - Nif3-like dinuclear metal center hexameric protein, at 956,761 to 957,501
_RS05170
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 954.812 kb on - strand, within MMJJ_RS05155 at 954.927 kb on - strand, within MMJJ_RS05155 at 955.014 kb on - strand, within MMJJ_RS05155 at 955.015 kb on + strand, within MMJJ_RS05155 at 955.325 kb on - strand, within MMJJ_RS05155 at 955.325 kb on - strand, within MMJJ_RS05155 at 955.325 kb on - strand, within MMJJ_RS05155 at 955.325 kb on - strand, within MMJJ_RS05155 at 955.371 kb on - strand, within MMJJ_RS05155 at 955.467 kb on + strand at 955.467 kb on + strand at 955.500 kb on - strand at 955.549 kb on + strand at 955.553 kb on - strand at 955.553 kb on - strand at 955.553 kb on - strand at 955.553 kb on - strand at 955.554 kb on + strand at 955.562 kb on - strand at 955.563 kb on + strand at 955.563 kb on + strand at 955.591 kb on - strand at 955.592 kb on + strand at 955.597 kb on - strand at 955.598 kb on + strand at 955.598 kb on + strand at 955.598 kb on + strand at 955.601 kb on - strand at 955.602 kb on + strand at 955.651 kb on + strand at 955.681 kb on - strand at 955.681 kb on - strand at 955.682 kb on + strand at 955.682 kb on + strand at 955.850 kb on - strand at 955.851 kb on + strand, within MMJJ_RS05160 at 955.902 kb on - strand, within MMJJ_RS05160 at 955.907 kb on - strand, within MMJJ_RS05160 at 955.985 kb on - strand, within MMJJ_RS05160 at 956.161 kb on + strand at 956.190 kb on - strand at 956.191 kb on + strand at 956.203 kb on - strand at 956.208 kb on - strand at 956.239 kb on + strand, within MMJJ_RS05165 at 956.342 kb on + strand, within MMJJ_RS05165 at 956.355 kb on - strand, within MMJJ_RS05165 at 956.355 kb on - strand, within MMJJ_RS05165 at 956.428 kb on - strand, within MMJJ_RS05165 at 956.428 kb on - strand, within MMJJ_RS05165 at 956.429 kb on + strand, within MMJJ_RS05165 at 956.452 kb on - strand, within MMJJ_RS05165 at 956.473 kb on + strand, within MMJJ_RS05165 at 956.478 kb on - strand, within MMJJ_RS05165 at 956.492 kb on - strand, within MMJJ_RS05165 at 956.493 kb on + strand, within MMJJ_RS05165 at 956.587 kb on + strand, within MMJJ_RS05165 at 956.596 kb on + strand, within MMJJ_RS05165 at 956.603 kb on - strand, within MMJJ_RS05165 at 956.603 kb on - strand, within MMJJ_RS05165 at 956.604 kb on + strand, within MMJJ_RS05165 at 956.660 kb on + strand, within MMJJ_RS05165 at 956.737 kb on + strand at 956.781 kb on + strand at 956.852 kb on - strand, within MMJJ_RS05170 at 957.017 kb on - strand, within MMJJ_RS05170 at 957.020 kb on - strand, within MMJJ_RS05170 at 957.020 kb on - strand, within MMJJ_RS05170 at 957.025 kb on + strand, within MMJJ_RS05170 at 957.054 kb on - strand, within MMJJ_RS05170 at 957.054 kb on - strand, within MMJJ_RS05170 at 957.067 kb on + strand, within MMJJ_RS05170 at 957.085 kb on + strand, within MMJJ_RS05170 at 957.095 kb on - strand, within MMJJ_RS05170 at 957.108 kb on - strand, within MMJJ_RS05170 at 957.134 kb on + strand, within MMJJ_RS05170
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 954,812 - MMJJ_RS05155 0.31 -1.5 954,927 - MMJJ_RS05155 0.42 -0.2 955,014 - MMJJ_RS05155 0.50 -1.4 955,015 + MMJJ_RS05155 0.50 -0.4 955,325 - MMJJ_RS05155 0.79 +0.4 955,325 - MMJJ_RS05155 0.79 -1.2 955,325 - MMJJ_RS05155 0.79 -1.8 955,325 - MMJJ_RS05155 0.79 +0.4 955,371 - MMJJ_RS05155 0.83 -2.1 955,467 + +1.2 955,467 + -0.2 955,500 - -0.6 955,549 + -1.8 955,553 - -1.3 955,553 - -1.9 955,553 - +2.9 955,553 - +0.2 955,554 + -2.6 955,562 - +1.8 955,563 + +0.2 955,563 + -1.9 955,591 - -0.5 955,592 + -2.9 955,597 - +2.2 955,598 + +3.8 955,598 + -0.4 955,598 + -0.9 955,601 - -1.9 955,602 + +0.4 955,651 + -0.2 955,681 - -1.3 955,681 - +1.8 955,682 + +0.7 955,682 + -1.7 955,850 - +0.4 955,851 + MMJJ_RS05160 0.39 +1.5 955,902 - MMJJ_RS05160 0.50 +2.9 955,907 - MMJJ_RS05160 0.51 +1.0 955,985 - MMJJ_RS05160 0.67 -1.8 956,161 + -1.0 956,190 - +1.8 956,191 + -2.3 956,203 - +0.0 956,208 - +0.8 956,239 + MMJJ_RS05165 0.14 -0.4 956,342 + MMJJ_RS05165 0.31 +1.4 956,355 - MMJJ_RS05165 0.33 -0.4 956,355 - MMJJ_RS05165 0.33 +0.0 956,428 - MMJJ_RS05165 0.45 +0.7 956,428 - MMJJ_RS05165 0.45 -0.8 956,429 + MMJJ_RS05165 0.45 -0.2 956,452 - MMJJ_RS05165 0.49 -2.5 956,473 + MMJJ_RS05165 0.52 -1.5 956,478 - MMJJ_RS05165 0.53 -0.2 956,492 - MMJJ_RS05165 0.55 +1.0 956,493 + MMJJ_RS05165 0.55 +3.3 956,587 + MMJJ_RS05165 0.71 -0.0 956,596 + MMJJ_RS05165 0.72 -2.9 956,603 - MMJJ_RS05165 0.73 -0.5 956,603 - MMJJ_RS05165 0.73 -0.8 956,604 + MMJJ_RS05165 0.74 -1.3 956,660 + MMJJ_RS05165 0.83 +0.2 956,737 + -1.4 956,781 + -1.6 956,852 - MMJJ_RS05170 0.12 -1.4 957,017 - MMJJ_RS05170 0.35 +0.1 957,020 - MMJJ_RS05170 0.35 -1.7 957,020 - MMJJ_RS05170 0.35 -0.6 957,025 + MMJJ_RS05170 0.36 -0.9 957,054 - MMJJ_RS05170 0.40 -1.7 957,054 - MMJJ_RS05170 0.40 +0.7 957,067 + MMJJ_RS05170 0.41 -2.2 957,085 + MMJJ_RS05170 0.44 -1.8 957,095 - MMJJ_RS05170 0.45 -0.9 957,108 - MMJJ_RS05170 0.47 +0.1 957,134 + MMJJ_RS05170 0.50 +0.1
Or see this region's nucleotide sequence