Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05065 and MMJJ_RS05070 are separated by 114 nucleotides MMJJ_RS05070 and MMJJ_RS05075 are separated by 67 nucleotides MMJJ_RS05075 and MMJJ_RS05080 are separated by 259 nucleotides MMJJ_RS05080 and MMJJ_RS05085 are separated by 44 nucleotides
MMJJ_RS05065: MMJJ_RS05065 - (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase, at 940,832 to 941,812
_RS05065
MMJJ_RS05070: MMJJ_RS05070 - DNA primase catalytic subunit PriS, at 941,927 to 943,000
_RS05070
MMJJ_RS05075: MMJJ_RS05075 - tRNA-Gln, at 943,068 to 943,143
_RS05075
MMJJ_RS05080: MMJJ_RS05080 - tRNA-Thr, at 943,403 to 943,476
_RS05080
MMJJ_RS05085: MMJJ_RS05085 - hypothetical protein, at 943,521 to 944,459
_RS05085
Position (kb) 941
942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 940.973 kb on - strand, within MMJJ_RS05065 at 941.027 kb on - strand, within MMJJ_RS05065 at 941.046 kb on - strand, within MMJJ_RS05065 at 941.063 kb on + strand, within MMJJ_RS05065 at 941.213 kb on + strand, within MMJJ_RS05065 at 941.222 kb on - strand, within MMJJ_RS05065 at 941.497 kb on + strand, within MMJJ_RS05065 at 941.696 kb on - strand, within MMJJ_RS05065 at 941.744 kb on + strand at 941.823 kb on - strand at 941.824 kb on + strand at 941.824 kb on + strand at 941.824 kb on + strand at 941.832 kb on + strand at 941.858 kb on - strand at 941.858 kb on - strand at 941.859 kb on + strand at 941.864 kb on - strand at 941.864 kb on - strand at 941.865 kb on + strand at 941.865 kb on + strand at 941.870 kb on - strand at 941.871 kb on + strand at 941.871 kb on + strand at 941.874 kb on - strand at 941.874 kb on - strand at 941.890 kb on - strand at 941.891 kb on + strand at 942.158 kb on + strand, within MMJJ_RS05070 at 942.254 kb on + strand, within MMJJ_RS05070 at 942.268 kb on - strand, within MMJJ_RS05070 at 942.390 kb on - strand, within MMJJ_RS05070 at 942.390 kb on - strand, within MMJJ_RS05070 at 942.417 kb on - strand at 943.030 kb on + strand at 943.062 kb on - strand at 943.180 kb on - strand at 943.264 kb on - strand at 943.265 kb on + strand at 943.265 kb on + strand at 943.271 kb on - strand at 943.334 kb on + strand at 943.485 kb on + strand at 943.563 kb on - strand at 943.563 kb on - strand at 943.564 kb on + strand at 943.564 kb on + strand at 943.572 kb on + strand at 943.689 kb on - strand, within MMJJ_RS05085 at 943.690 kb on + strand, within MMJJ_RS05085 at 943.702 kb on + strand, within MMJJ_RS05085 at 943.741 kb on + strand, within MMJJ_RS05085 at 943.742 kb on - strand, within MMJJ_RS05085 at 943.743 kb on + strand, within MMJJ_RS05085 at 943.905 kb on - strand, within MMJJ_RS05085 at 943.906 kb on + strand, within MMJJ_RS05085 at 943.953 kb on - strand, within MMJJ_RS05085 at 943.974 kb on + strand, within MMJJ_RS05085 at 943.984 kb on + strand, within MMJJ_RS05085
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 940,973 - MMJJ_RS05065 0.14 -2.4 941,027 - MMJJ_RS05065 0.20 -0.7 941,046 - MMJJ_RS05065 0.22 -1.0 941,063 + MMJJ_RS05065 0.24 -0.7 941,213 + MMJJ_RS05065 0.39 -2.0 941,222 - MMJJ_RS05065 0.40 -0.2 941,497 + MMJJ_RS05065 0.68 -2.5 941,696 - MMJJ_RS05065 0.88 -0.8 941,744 + +0.3 941,823 - -1.6 941,824 + -0.8 941,824 + -3.2 941,824 + -0.7 941,832 + -2.0 941,858 - -1.1 941,858 - -2.7 941,859 + -2.9 941,864 - -1.5 941,864 - +0.3 941,865 + -0.7 941,865 + -2.9 941,870 - +0.3 941,871 + -1.6 941,871 + -1.0 941,874 - +2.6 941,874 - -1.7 941,890 - -1.4 941,891 + +1.7 942,158 + MMJJ_RS05070 0.22 -0.2 942,254 + MMJJ_RS05070 0.30 +1.3 942,268 - MMJJ_RS05070 0.32 -2.1 942,390 - MMJJ_RS05070 0.43 -0.2 942,390 - MMJJ_RS05070 0.43 -0.7 942,417 - +1.3 943,030 + -2.5 943,062 - +0.8 943,180 - -1.0 943,264 - -2.2 943,265 + -0.9 943,265 + -0.9 943,271 - -1.2 943,334 + -0.2 943,485 + -3.5 943,563 - -0.8 943,563 - -2.8 943,564 + -0.7 943,564 + -0.4 943,572 + +0.9 943,689 - MMJJ_RS05085 0.18 -1.0 943,690 + MMJJ_RS05085 0.18 -2.6 943,702 + MMJJ_RS05085 0.19 -0.7 943,741 + MMJJ_RS05085 0.23 -1.2 943,742 - MMJJ_RS05085 0.24 +1.7 943,743 + MMJJ_RS05085 0.24 +1.4 943,905 - MMJJ_RS05085 0.41 +3.3 943,906 + MMJJ_RS05085 0.41 -1.0 943,953 - MMJJ_RS05085 0.46 -2.2 943,974 + MMJJ_RS05085 0.48 -1.8 943,984 + MMJJ_RS05085 0.49 -2.4
Or see this region's nucleotide sequence