Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04990 and MMJJ_RS04995 are separated by 134 nucleotides MMJJ_RS04995 and MMJJ_RS05000 overlap by 1 nucleotides
MMJJ_RS04990: MMJJ_RS04990 - hydroxymethylglutaryl-CoA reductase (NADPH), at 926,666 to 927,892
_RS04990
MMJJ_RS04995: MMJJ_RS04995 - Tfx family DNA-binding protein, at 928,027 to 928,476
_RS04995
MMJJ_RS05000: MMJJ_RS05000 - mRNA surveillance protein pelota, at 928,476 to 929,522
_RS05000
Position (kb) 928
929 Strain fitness (log2 ratio) -2
-1
0
1
2 at 927.179 kb on + strand at 927.338 kb on + strand, within MMJJ_RS04990 at 927.344 kb on + strand at 927.613 kb on - strand at 927.614 kb on + strand, within MMJJ_RS04990 at 927.754 kb on + strand, within MMJJ_RS04990 at 927.971 kb on + strand at 927.975 kb on - strand at 927.975 kb on - strand at 927.976 kb on + strand at 927.976 kb on + strand at 927.993 kb on - strand at 927.997 kb on + strand at 927.997 kb on + strand at 927.997 kb on + strand at 927.997 kb on + strand at 927.999 kb on + strand at 928.007 kb on - strand at 928.007 kb on - strand at 928.008 kb on + strand at 928.027 kb on + strand at 928.027 kb on + strand at 928.055 kb on - strand at 928.108 kb on + strand, within MMJJ_RS04995 at 928.183 kb on + strand, within MMJJ_RS04995 at 928.183 kb on + strand at 928.195 kb on - strand, within MMJJ_RS04995 at 928.195 kb on - strand, within MMJJ_RS04995 at 928.195 kb on - strand, within MMJJ_RS04995 at 928.229 kb on - strand at 928.251 kb on - strand, within MMJJ_RS04995 at 928.252 kb on + strand, within MMJJ_RS04995 at 928.295 kb on - strand, within MMJJ_RS04995 at 928.302 kb on + strand, within MMJJ_RS04995 at 928.302 kb on + strand, within MMJJ_RS04995 at 928.355 kb on + strand, within MMJJ_RS04995 at 928.355 kb on + strand, within MMJJ_RS04995 at 928.398 kb on + strand, within MMJJ_RS04995 at 928.414 kb on + strand, within MMJJ_RS04995 at 928.415 kb on - strand, within MMJJ_RS04995 at 928.560 kb on + strand at 928.713 kb on + strand, within MMJJ_RS05000 at 928.769 kb on - strand, within MMJJ_RS05000 at 928.937 kb on - strand at 929.104 kb on + strand, within MMJJ_RS05000 at 929.354 kb on + strand, within MMJJ_RS05000 at 929.372 kb on + strand, within MMJJ_RS05000
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 927,179 + +0.4 927,338 + MMJJ_RS04990 0.55 -0.6 927,344 + +1.4 927,613 - +1.4 927,614 + MMJJ_RS04990 0.77 -1.5 927,754 + MMJJ_RS04990 0.89 -0.6 927,971 + -0.6 927,975 - +1.4 927,975 - -0.1 927,976 + -2.0 927,976 + -1.5 927,993 - -1.5 927,997 + -1.5 927,997 + +0.9 927,997 + +1.8 927,997 + -0.7 927,999 + +1.2 928,007 - -2.1 928,007 - -0.6 928,008 + -0.6 928,027 + -1.6 928,027 + -2.0 928,055 - +0.8 928,108 + MMJJ_RS04995 0.18 +0.8 928,183 + MMJJ_RS04995 0.35 -2.1 928,183 + +0.4 928,195 - MMJJ_RS04995 0.37 -2.6 928,195 - MMJJ_RS04995 0.37 -2.1 928,195 - MMJJ_RS04995 0.37 -0.2 928,229 - +1.4 928,251 - MMJJ_RS04995 0.50 -2.0 928,252 + MMJJ_RS04995 0.50 -1.2 928,295 - MMJJ_RS04995 0.60 -2.0 928,302 + MMJJ_RS04995 0.61 -2.1 928,302 + MMJJ_RS04995 0.61 +1.4 928,355 + MMJJ_RS04995 0.73 -0.8 928,355 + MMJJ_RS04995 0.73 +1.8 928,398 + MMJJ_RS04995 0.82 -0.6 928,414 + MMJJ_RS04995 0.86 +0.4 928,415 - MMJJ_RS04995 0.86 -0.6 928,560 + +1.4 928,713 + MMJJ_RS05000 0.23 +1.4 928,769 - MMJJ_RS05000 0.28 +0.4 928,937 - -0.2 929,104 + MMJJ_RS05000 0.60 -0.6 929,354 + MMJJ_RS05000 0.84 +0.0 929,372 + MMJJ_RS05000 0.86 +2.4
Or see this region's nucleotide sequence