Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04975 and MMJJ_RS04980 are separated by 15 nucleotides MMJJ_RS04980 and MMJJ_RS04985 are separated by 4 nucleotides
MMJJ_RS04975: MMJJ_RS04975 - glycosyltransferase family 4 protein, at 923,835 to 924,902
_RS04975
MMJJ_RS04980: MMJJ_RS04980 - bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase, at 924,918 to 925,523
_RS04980
MMJJ_RS04985: MMJJ_RS04985 - glutamyl-tRNA reductase, at 925,528 to 926,676
_RS04985
Position (kb) 924
925
926 Strain fitness (log2 ratio) -1
0
1
2 at 924.025 kb on - strand, within MMJJ_RS04975 at 924.112 kb on + strand, within MMJJ_RS04975 at 924.196 kb on - strand, within MMJJ_RS04975 at 924.265 kb on - strand, within MMJJ_RS04975 at 924.726 kb on - strand, within MMJJ_RS04975 at 924.875 kb on - strand at 924.875 kb on - strand at 924.877 kb on - strand at 924.877 kb on - strand at 924.878 kb on + strand at 924.878 kb on + strand at 924.897 kb on + strand at 924.897 kb on + strand at 924.951 kb on + strand at 925.011 kb on + strand, within MMJJ_RS04980 at 925.058 kb on - strand, within MMJJ_RS04980 at 925.099 kb on - strand at 925.108 kb on - strand, within MMJJ_RS04980 at 925.123 kb on - strand, within MMJJ_RS04980 at 925.123 kb on - strand, within MMJJ_RS04980 at 925.124 kb on + strand, within MMJJ_RS04980 at 925.148 kb on - strand, within MMJJ_RS04980 at 925.149 kb on + strand, within MMJJ_RS04980 at 925.152 kb on + strand, within MMJJ_RS04980 at 925.209 kb on + strand, within MMJJ_RS04980 at 925.300 kb on - strand, within MMJJ_RS04980 at 925.302 kb on - strand, within MMJJ_RS04980 at 925.303 kb on + strand, within MMJJ_RS04980 at 925.469 kb on - strand at 925.661 kb on + strand, within MMJJ_RS04985 at 925.676 kb on - strand, within MMJJ_RS04985 at 925.677 kb on + strand, within MMJJ_RS04985 at 925.696 kb on + strand, within MMJJ_RS04985 at 925.788 kb on + strand, within MMJJ_RS04985 at 926.006 kb on - strand, within MMJJ_RS04985 at 926.098 kb on - strand, within MMJJ_RS04985 at 926.237 kb on - strand, within MMJJ_RS04985 at 926.270 kb on - strand, within MMJJ_RS04985 at 926.329 kb on + strand, within MMJJ_RS04985 at 926.332 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 924,025 - MMJJ_RS04975 0.18 +2.4 924,112 + MMJJ_RS04975 0.26 -1.0 924,196 - MMJJ_RS04975 0.34 -1.0 924,265 - MMJJ_RS04975 0.40 -0.6 924,726 - MMJJ_RS04975 0.83 -0.2 924,875 - -1.0 924,875 - -0.7 924,877 - +1.3 924,877 - +0.3 924,878 + -0.7 924,878 + -0.2 924,897 + +2.6 924,897 + +2.0 924,951 + +0.3 925,011 + MMJJ_RS04980 0.15 -1.0 925,058 - MMJJ_RS04980 0.23 -1.0 925,099 - +0.3 925,108 - MMJJ_RS04980 0.31 -1.5 925,123 - MMJJ_RS04980 0.34 -1.3 925,123 - MMJJ_RS04980 0.34 -1.2 925,124 + MMJJ_RS04980 0.34 -0.2 925,148 - MMJJ_RS04980 0.38 -0.7 925,149 + MMJJ_RS04980 0.38 +0.3 925,152 + MMJJ_RS04980 0.39 -1.0 925,209 + MMJJ_RS04980 0.48 -1.2 925,300 - MMJJ_RS04980 0.63 +0.3 925,302 - MMJJ_RS04980 0.63 +0.3 925,303 + MMJJ_RS04980 0.64 +0.3 925,469 - +1.3 925,661 + MMJJ_RS04985 0.12 +0.3 925,676 - MMJJ_RS04985 0.13 -0.2 925,677 + MMJJ_RS04985 0.13 +0.8 925,696 + MMJJ_RS04985 0.15 -0.2 925,788 + MMJJ_RS04985 0.23 +0.4 926,006 - MMJJ_RS04985 0.42 +0.4 926,098 - MMJJ_RS04985 0.50 -0.9 926,237 - MMJJ_RS04985 0.62 -0.2 926,270 - MMJJ_RS04985 0.65 +0.8 926,329 + MMJJ_RS04985 0.70 -0.2 926,332 + +0.4
Or see this region's nucleotide sequence