Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04955 and MMJJ_RS04960 are separated by 85 nucleotides MMJJ_RS04960 and MMJJ_RS04965 are separated by 48 nucleotides MMJJ_RS04965 and MMJJ_RS04970 are separated by 100 nucleotides
MMJJ_RS04955: MMJJ_RS04955 - tRNA pseudouridine(54/55) synthase Pus10, at 920,964 to 922,376
_RS04955
MMJJ_RS04960: MMJJ_RS04960 - 50S ribosomal protein L21e, at 922,462 to 922,755
_RS04960
MMJJ_RS04965: MMJJ_RS04965 - RNA polymerase Rpb4 family protein, at 922,804 to 923,127
_RS04965
MMJJ_RS04970: MMJJ_RS04970 - DUF655 domain-containing protein, at 923,228 to 923,812
_RS04970
Position (kb) 922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 921.583 kb on - strand, within MMJJ_RS04955 at 921.583 kb on - strand, within MMJJ_RS04955 at 921.584 kb on + strand, within MMJJ_RS04955 at 921.597 kb on - strand, within MMJJ_RS04955 at 921.597 kb on - strand, within MMJJ_RS04955 at 921.598 kb on + strand, within MMJJ_RS04955 at 921.692 kb on - strand, within MMJJ_RS04955 at 921.693 kb on + strand, within MMJJ_RS04955 at 921.731 kb on - strand, within MMJJ_RS04955 at 921.744 kb on - strand, within MMJJ_RS04955 at 921.745 kb on + strand, within MMJJ_RS04955 at 921.745 kb on + strand, within MMJJ_RS04955 at 921.767 kb on - strand, within MMJJ_RS04955 at 921.874 kb on - strand, within MMJJ_RS04955 at 921.958 kb on - strand, within MMJJ_RS04955 at 922.026 kb on - strand, within MMJJ_RS04955 at 922.026 kb on - strand, within MMJJ_RS04955 at 922.027 kb on + strand, within MMJJ_RS04955 at 922.171 kb on - strand, within MMJJ_RS04955 at 922.172 kb on + strand, within MMJJ_RS04955 at 922.242 kb on - strand at 922.243 kb on + strand at 922.256 kb on - strand at 922.303 kb on - strand at 922.307 kb on - strand at 922.316 kb on - strand at 922.316 kb on - strand at 922.317 kb on + strand at 922.317 kb on + strand at 922.322 kb on - strand at 922.330 kb on - strand at 922.353 kb on - strand at 922.375 kb on + strand at 922.747 kb on + strand at 922.757 kb on - strand at 922.762 kb on - strand at 922.803 kb on - strand at 922.821 kb on - strand at 922.943 kb on - strand, within MMJJ_RS04965 at 922.943 kb on - strand, within MMJJ_RS04965 at 922.943 kb on - strand, within MMJJ_RS04965 at 922.947 kb on - strand, within MMJJ_RS04965 at 922.947 kb on - strand, within MMJJ_RS04965 at 922.948 kb on + strand, within MMJJ_RS04965 at 922.966 kb on + strand, within MMJJ_RS04965 at 923.061 kb on + strand, within MMJJ_RS04965 at 923.065 kb on - strand, within MMJJ_RS04965 at 923.065 kb on - strand, within MMJJ_RS04965 at 923.068 kb on + strand, within MMJJ_RS04965 at 923.108 kb on - strand at 923.108 kb on - strand at 923.109 kb on + strand at 923.116 kb on + strand at 923.144 kb on - strand at 923.145 kb on + strand at 923.145 kb on + strand at 923.147 kb on - strand at 923.187 kb on + strand at 923.190 kb on - strand at 923.190 kb on - strand at 923.191 kb on + strand at 923.196 kb on - strand at 923.318 kb on + strand, within MMJJ_RS04970 at 923.429 kb on - strand, within MMJJ_RS04970 at 923.613 kb on - strand, within MMJJ_RS04970 at 923.613 kb on - strand, within MMJJ_RS04970
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 921,583 - MMJJ_RS04955 0.44 +2.1 921,583 - MMJJ_RS04955 0.44 -2.2 921,584 + MMJJ_RS04955 0.44 +0.4 921,597 - MMJJ_RS04955 0.45 -1.7 921,597 - MMJJ_RS04955 0.45 +1.5 921,598 + MMJJ_RS04955 0.45 +1.6 921,692 - MMJJ_RS04955 0.52 -1.1 921,693 + MMJJ_RS04955 0.52 -1.9 921,731 - MMJJ_RS04955 0.54 -0.5 921,744 - MMJJ_RS04955 0.55 +4.6 921,745 + MMJJ_RS04955 0.55 +0.0 921,745 + MMJJ_RS04955 0.55 +2.6 921,767 - MMJJ_RS04955 0.57 +1.3 921,874 - MMJJ_RS04955 0.64 +5.4 921,958 - MMJJ_RS04955 0.70 -2.3 922,026 - MMJJ_RS04955 0.75 +0.6 922,026 - MMJJ_RS04955 0.75 -0.2 922,027 + MMJJ_RS04955 0.75 -1.4 922,171 - MMJJ_RS04955 0.85 +2.3 922,172 + MMJJ_RS04955 0.85 -1.4 922,242 - -1.0 922,243 + +1.9 922,256 - -1.5 922,303 - +0.8 922,307 - +4.5 922,316 - -1.9 922,316 - +0.6 922,317 + -0.1 922,317 + +1.2 922,322 - +4.3 922,330 - -2.9 922,353 - -1.3 922,375 + -1.8 922,747 + -0.6 922,757 - -1.1 922,762 - -0.6 922,803 - +0.4 922,821 - +1.1 922,943 - MMJJ_RS04965 0.43 -1.6 922,943 - MMJJ_RS04965 0.43 -1.4 922,943 - MMJJ_RS04965 0.43 -2.0 922,947 - MMJJ_RS04965 0.44 -3.1 922,947 - MMJJ_RS04965 0.44 +0.0 922,948 + MMJJ_RS04965 0.44 -1.4 922,966 + MMJJ_RS04965 0.50 +0.8 923,061 + MMJJ_RS04965 0.79 -0.2 923,065 - MMJJ_RS04965 0.81 +1.9 923,065 - MMJJ_RS04965 0.81 -1.8 923,068 + MMJJ_RS04965 0.81 +0.4 923,108 - -3.4 923,108 - +4.4 923,109 + -1.5 923,116 + -2.7 923,144 - +0.4 923,145 + -2.3 923,145 + -2.7 923,147 - -2.8 923,187 + -0.6 923,190 - -0.2 923,190 - +0.6 923,191 + -1.2 923,196 - -0.2 923,318 + MMJJ_RS04970 0.15 -1.2 923,429 - MMJJ_RS04970 0.34 -1.0 923,613 - MMJJ_RS04970 0.66 -2.1 923,613 - MMJJ_RS04970 0.66 -0.6
Or see this region's nucleotide sequence