Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04950 and MMJJ_RS04955 are separated by 21 nucleotides MMJJ_RS04955 and MMJJ_RS04960 are separated by 85 nucleotides MMJJ_RS04960 and MMJJ_RS04965 are separated by 48 nucleotides MMJJ_RS04965 and MMJJ_RS04970 are separated by 100 nucleotides
MMJJ_RS04950: MMJJ_RS04950 - TIGR00375 family protein, at 919,761 to 920,942
_RS04950
MMJJ_RS04955: MMJJ_RS04955 - tRNA pseudouridine(54/55) synthase Pus10, at 920,964 to 922,376
_RS04955
MMJJ_RS04960: MMJJ_RS04960 - 50S ribosomal protein L21e, at 922,462 to 922,755
_RS04960
MMJJ_RS04965: MMJJ_RS04965 - RNA polymerase Rpb4 family protein, at 922,804 to 923,127
_RS04965
MMJJ_RS04970: MMJJ_RS04970 - DUF655 domain-containing protein, at 923,228 to 923,812
_RS04970
Position (kb) 920
921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 919.980 kb on + strand, within MMJJ_RS04950 at 919.981 kb on - strand, within MMJJ_RS04950 at 919.982 kb on + strand, within MMJJ_RS04950 at 919.982 kb on + strand, within MMJJ_RS04950 at 920.009 kb on - strand, within MMJJ_RS04950 at 920.010 kb on + strand, within MMJJ_RS04950 at 920.010 kb on + strand, within MMJJ_RS04950 at 920.043 kb on - strand, within MMJJ_RS04950 at 920.043 kb on - strand, within MMJJ_RS04950 at 920.071 kb on - strand, within MMJJ_RS04950 at 920.097 kb on - strand, within MMJJ_RS04950 at 920.098 kb on + strand, within MMJJ_RS04950 at 920.098 kb on + strand, within MMJJ_RS04950 at 920.098 kb on + strand, within MMJJ_RS04950 at 920.130 kb on + strand, within MMJJ_RS04950 at 920.199 kb on - strand, within MMJJ_RS04950 at 920.199 kb on - strand, within MMJJ_RS04950 at 920.200 kb on + strand, within MMJJ_RS04950 at 920.200 kb on + strand, within MMJJ_RS04950 at 920.204 kb on - strand, within MMJJ_RS04950 at 920.204 kb on - strand, within MMJJ_RS04950 at 920.205 kb on + strand, within MMJJ_RS04950 at 920.205 kb on + strand, within MMJJ_RS04950 at 920.205 kb on + strand, within MMJJ_RS04950 at 920.211 kb on + strand, within MMJJ_RS04950 at 920.211 kb on + strand, within MMJJ_RS04950 at 920.215 kb on - strand, within MMJJ_RS04950 at 920.215 kb on - strand, within MMJJ_RS04950 at 920.215 kb on - strand, within MMJJ_RS04950 at 920.215 kb on - strand, within MMJJ_RS04950 at 920.215 kb on - strand, within MMJJ_RS04950 at 920.215 kb on - strand, within MMJJ_RS04950 at 920.216 kb on + strand, within MMJJ_RS04950 at 920.216 kb on + strand, within MMJJ_RS04950 at 920.216 kb on + strand, within MMJJ_RS04950 at 920.225 kb on - strand, within MMJJ_RS04950 at 920.225 kb on - strand, within MMJJ_RS04950 at 920.226 kb on + strand, within MMJJ_RS04950 at 920.226 kb on + strand, within MMJJ_RS04950 at 920.235 kb on - strand, within MMJJ_RS04950 at 920.235 kb on - strand, within MMJJ_RS04950 at 920.235 kb on - strand, within MMJJ_RS04950 at 920.235 kb on - strand, within MMJJ_RS04950 at 920.236 kb on + strand, within MMJJ_RS04950 at 920.236 kb on + strand, within MMJJ_RS04950 at 920.242 kb on - strand, within MMJJ_RS04950 at 920.243 kb on + strand, within MMJJ_RS04950 at 920.269 kb on - strand, within MMJJ_RS04950 at 920.285 kb on - strand, within MMJJ_RS04950 at 920.286 kb on + strand, within MMJJ_RS04950 at 920.286 kb on + strand, within MMJJ_RS04950 at 920.307 kb on - strand, within MMJJ_RS04950 at 920.308 kb on + strand, within MMJJ_RS04950 at 920.308 kb on + strand, within MMJJ_RS04950 at 920.346 kb on - strand, within MMJJ_RS04950 at 920.346 kb on - strand, within MMJJ_RS04950 at 920.346 kb on - strand, within MMJJ_RS04950 at 920.346 kb on - strand, within MMJJ_RS04950 at 920.346 kb on - strand, within MMJJ_RS04950 at 920.347 kb on + strand, within MMJJ_RS04950 at 920.347 kb on + strand, within MMJJ_RS04950 at 920.347 kb on + strand, within MMJJ_RS04950 at 920.347 kb on + strand, within MMJJ_RS04950 at 920.512 kb on - strand, within MMJJ_RS04950 at 920.522 kb on - strand, within MMJJ_RS04950 at 920.533 kb on - strand, within MMJJ_RS04950 at 920.533 kb on - strand, within MMJJ_RS04950 at 920.538 kb on + strand, within MMJJ_RS04950 at 920.703 kb on + strand, within MMJJ_RS04950 at 920.713 kb on - strand, within MMJJ_RS04950 at 920.713 kb on - strand, within MMJJ_RS04950 at 920.714 kb on + strand, within MMJJ_RS04950 at 920.716 kb on + strand, within MMJJ_RS04950 at 920.718 kb on - strand, within MMJJ_RS04950 at 920.719 kb on + strand, within MMJJ_RS04950 at 920.832 kb on - strand at 920.847 kb on - strand at 920.857 kb on - strand at 920.857 kb on - strand at 920.857 kb on - strand at 920.863 kb on + strand at 920.865 kb on - strand at 920.865 kb on - strand at 920.865 kb on - strand at 920.865 kb on - strand at 920.865 kb on - strand at 920.865 kb on - strand at 920.866 kb on + strand at 920.866 kb on + strand at 920.866 kb on + strand at 920.866 kb on + strand at 920.867 kb on - strand at 920.867 kb on - strand at 920.867 kb on - strand at 920.867 kb on - strand at 920.867 kb on - strand at 920.867 kb on - strand at 920.867 kb on - strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.868 kb on + strand at 920.882 kb on - strand at 920.882 kb on - strand at 920.882 kb on - strand at 920.882 kb on - strand at 920.883 kb on + strand at 920.884 kb on - strand at 920.884 kb on - strand at 920.884 kb on - strand at 920.884 kb on - strand at 920.884 kb on - strand at 920.884 kb on - strand at 920.884 kb on - strand at 920.885 kb on + strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.888 kb on - strand at 920.889 kb on + strand at 920.889 kb on + strand at 920.889 kb on + strand at 920.889 kb on + strand at 920.889 kb on + strand at 920.889 kb on + strand at 920.889 kb on + strand at 920.889 kb on + strand at 920.889 kb on + strand at 920.889 kb on + strand at 920.900 kb on - strand at 920.900 kb on - strand at 920.900 kb on - strand at 920.900 kb on - strand at 920.901 kb on + strand at 920.918 kb on - strand at 920.919 kb on + strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.923 kb on + strand at 920.923 kb on + strand at 920.923 kb on + strand at 920.923 kb on + strand at 920.923 kb on + strand at 920.923 kb on + strand at 920.934 kb on - strand at 920.934 kb on - strand at 920.934 kb on - strand at 920.934 kb on - strand at 920.935 kb on + strand at 920.935 kb on + strand at 920.935 kb on + strand at 920.962 kb on + strand at 920.963 kb on - strand at 920.963 kb on - strand at 920.964 kb on + strand at 920.964 kb on + strand at 920.964 kb on + strand at 920.970 kb on + strand at 920.971 kb on - strand at 920.971 kb on - strand at 920.971 kb on - strand at 920.971 kb on - strand at 920.971 kb on - strand at 920.971 kb on - strand at 920.971 kb on - strand at 920.971 kb on - strand at 920.971 kb on - strand at 920.971 kb on - strand at 920.972 kb on + strand at 920.972 kb on + strand at 920.972 kb on + strand at 920.972 kb on + strand at 920.972 kb on + strand at 920.972 kb on + strand at 920.972 kb on + strand at 920.972 kb on + strand at 920.972 kb on + strand at 920.972 kb on + strand at 920.976 kb on - strand at 920.976 kb on - strand at 921.038 kb on - strand at 921.041 kb on - strand at 921.041 kb on - strand at 921.110 kb on + strand, within MMJJ_RS04955 at 921.166 kb on - strand, within MMJJ_RS04955 at 921.205 kb on + strand, within MMJJ_RS04955 at 921.205 kb on + strand, within MMJJ_RS04955 at 921.247 kb on - strand, within MMJJ_RS04955 at 921.385 kb on - strand, within MMJJ_RS04955 at 921.386 kb on + strand, within MMJJ_RS04955 at 921.390 kb on + strand, within MMJJ_RS04955 at 921.390 kb on + strand, within MMJJ_RS04955 at 921.583 kb on - strand, within MMJJ_RS04955 at 921.583 kb on - strand, within MMJJ_RS04955 at 921.584 kb on + strand, within MMJJ_RS04955 at 921.597 kb on - strand, within MMJJ_RS04955 at 921.597 kb on - strand, within MMJJ_RS04955 at 921.598 kb on + strand, within MMJJ_RS04955 at 921.692 kb on - strand, within MMJJ_RS04955 at 921.693 kb on + strand, within MMJJ_RS04955 at 921.731 kb on - strand, within MMJJ_RS04955 at 921.744 kb on - strand, within MMJJ_RS04955 at 921.745 kb on + strand, within MMJJ_RS04955 at 921.745 kb on + strand, within MMJJ_RS04955 at 921.767 kb on - strand, within MMJJ_RS04955 at 921.874 kb on - strand, within MMJJ_RS04955 at 921.958 kb on - strand, within MMJJ_RS04955 at 922.026 kb on - strand, within MMJJ_RS04955 at 922.026 kb on - strand, within MMJJ_RS04955 at 922.027 kb on + strand, within MMJJ_RS04955 at 922.171 kb on - strand, within MMJJ_RS04955 at 922.172 kb on + strand, within MMJJ_RS04955 at 922.242 kb on - strand at 922.243 kb on + strand at 922.256 kb on - strand at 922.303 kb on - strand at 922.307 kb on - strand at 922.316 kb on - strand at 922.316 kb on - strand at 922.317 kb on + strand at 922.317 kb on + strand at 922.322 kb on - strand at 922.330 kb on - strand at 922.353 kb on - strand at 922.375 kb on + strand at 922.747 kb on + strand at 922.757 kb on - strand at 922.762 kb on - strand at 922.803 kb on - strand at 922.821 kb on - strand at 922.943 kb on - strand, within MMJJ_RS04965 at 922.943 kb on - strand, within MMJJ_RS04965 at 922.943 kb on - strand, within MMJJ_RS04965 at 922.947 kb on - strand, within MMJJ_RS04965 at 922.947 kb on - strand, within MMJJ_RS04965 at 922.948 kb on + strand, within MMJJ_RS04965 at 922.966 kb on + strand, within MMJJ_RS04965 at 923.061 kb on + strand, within MMJJ_RS04965 at 923.065 kb on - strand, within MMJJ_RS04965 at 923.065 kb on - strand, within MMJJ_RS04965 at 923.068 kb on + strand, within MMJJ_RS04965 at 923.108 kb on - strand at 923.108 kb on - strand at 923.109 kb on + strand at 923.116 kb on + strand at 923.144 kb on - strand at 923.145 kb on + strand at 923.145 kb on + strand at 923.147 kb on - strand at 923.187 kb on + strand at 923.190 kb on - strand at 923.190 kb on - strand at 923.191 kb on + strand at 923.196 kb on - strand at 923.318 kb on + strand, within MMJJ_RS04970
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 919,980 + MMJJ_RS04950 0.19 -1.6 919,981 - MMJJ_RS04950 0.19 +1.0 919,982 + MMJJ_RS04950 0.19 -0.4 919,982 + MMJJ_RS04950 0.19 +1.4 920,009 - MMJJ_RS04950 0.21 -3.1 920,010 + MMJJ_RS04950 0.21 -1.2 920,010 + MMJJ_RS04950 0.21 +0.3 920,043 - MMJJ_RS04950 0.24 -0.2 920,043 - MMJJ_RS04950 0.24 +3.5 920,071 - MMJJ_RS04950 0.26 +2.1 920,097 - MMJJ_RS04950 0.28 +0.4 920,098 + MMJJ_RS04950 0.29 +1.8 920,098 + MMJJ_RS04950 0.29 +1.8 920,098 + MMJJ_RS04950 0.29 +1.2 920,130 + MMJJ_RS04950 0.31 +0.4 920,199 - MMJJ_RS04950 0.37 +0.4 920,199 - MMJJ_RS04950 0.37 +0.4 920,200 + MMJJ_RS04950 0.37 +1.6 920,200 + MMJJ_RS04950 0.37 +0.2 920,204 - MMJJ_RS04950 0.37 -0.6 920,204 - MMJJ_RS04950 0.37 -1.5 920,205 + MMJJ_RS04950 0.38 -0.0 920,205 + MMJJ_RS04950 0.38 +1.8 920,205 + MMJJ_RS04950 0.38 +0.4 920,211 + MMJJ_RS04950 0.38 +3.9 920,211 + MMJJ_RS04950 0.38 +1.1 920,215 - MMJJ_RS04950 0.38 +0.1 920,215 - MMJJ_RS04950 0.38 -0.7 920,215 - MMJJ_RS04950 0.38 +0.4 920,215 - MMJJ_RS04950 0.38 -1.1 920,215 - MMJJ_RS04950 0.38 -1.3 920,215 - MMJJ_RS04950 0.38 +0.6 920,216 + MMJJ_RS04950 0.38 -1.8 920,216 + MMJJ_RS04950 0.38 -1.3 920,216 + MMJJ_RS04950 0.38 -1.4 920,225 - MMJJ_RS04950 0.39 -3.5 920,225 - MMJJ_RS04950 0.39 +4.0 920,226 + MMJJ_RS04950 0.39 -0.9 920,226 + MMJJ_RS04950 0.39 +2.7 920,235 - MMJJ_RS04950 0.40 +3.9 920,235 - MMJJ_RS04950 0.40 +1.5 920,235 - MMJJ_RS04950 0.40 -1.8 920,235 - MMJJ_RS04950 0.40 +2.0 920,236 + MMJJ_RS04950 0.40 +0.7 920,236 + MMJJ_RS04950 0.40 -1.1 920,242 - MMJJ_RS04950 0.41 +2.0 920,243 + MMJJ_RS04950 0.41 +2.6 920,269 - MMJJ_RS04950 0.43 +0.7 920,285 - MMJJ_RS04950 0.44 +0.2 920,286 + MMJJ_RS04950 0.44 +1.5 920,286 + MMJJ_RS04950 0.44 -1.1 920,307 - MMJJ_RS04950 0.46 -1.6 920,308 + MMJJ_RS04950 0.46 -0.9 920,308 + MMJJ_RS04950 0.46 -2.4 920,346 - MMJJ_RS04950 0.49 +0.3 920,346 - MMJJ_RS04950 0.49 +2.8 920,346 - MMJJ_RS04950 0.49 -3.2 920,346 - MMJJ_RS04950 0.49 -3.6 920,346 - MMJJ_RS04950 0.49 +0.9 920,347 + MMJJ_RS04950 0.50 +0.8 920,347 + MMJJ_RS04950 0.50 -0.6 920,347 + MMJJ_RS04950 0.50 +3.8 920,347 + MMJJ_RS04950 0.50 -0.4 920,512 - MMJJ_RS04950 0.64 -0.8 920,522 - MMJJ_RS04950 0.64 +1.4 920,533 - MMJJ_RS04950 0.65 +2.0 920,533 - MMJJ_RS04950 0.65 -3.2 920,538 + MMJJ_RS04950 0.66 +2.7 920,703 + MMJJ_RS04950 0.80 +1.2 920,713 - MMJJ_RS04950 0.81 -2.5 920,713 - MMJJ_RS04950 0.81 -1.4 920,714 + MMJJ_RS04950 0.81 +0.6 920,716 + MMJJ_RS04950 0.81 -1.9 920,718 - MMJJ_RS04950 0.81 -2.5 920,719 + MMJJ_RS04950 0.81 -0.7 920,832 - +1.0 920,847 - -0.1 920,857 - +1.4 920,857 - +3.9 920,857 - +0.6 920,863 + +0.4 920,865 - -0.9 920,865 - -1.0 920,865 - -1.6 920,865 - +3.7 920,865 - +1.9 920,865 - +2.2 920,866 + -0.1 920,866 + -0.0 920,866 + -0.9 920,866 + -2.3 920,867 - -0.2 920,867 - -1.7 920,867 - -0.8 920,867 - +2.5 920,867 - +0.1 920,867 - -0.2 920,867 - +1.6 920,868 + +0.5 920,868 + -1.7 920,868 + -1.1 920,868 + -0.4 920,868 + -2.4 920,868 + -2.9 920,868 + +2.4 920,868 + -2.7 920,868 + +3.2 920,868 + +3.7 920,868 + +0.3 920,882 - +2.3 920,882 - -2.8 920,882 - +3.2 920,882 - -2.1 920,883 + -0.0 920,884 - -2.5 920,884 - -1.4 920,884 - +1.3 920,884 - +2.6 920,884 - -0.5 920,884 - -0.2 920,884 - +0.9 920,885 + +3.7 920,888 - -0.9 920,888 - +0.0 920,888 - +0.1 920,888 - +3.5 920,888 - -0.5 920,888 - -3.1 920,888 - +0.4 920,888 - -1.2 920,888 - -0.5 920,888 - -1.4 920,888 - +5.0 920,889 + +1.4 920,889 + +0.8 920,889 + +2.1 920,889 + +0.8 920,889 + +0.7 920,889 + +2.8 920,889 + +4.2 920,889 + +0.7 920,889 + -3.0 920,889 + -2.1 920,900 - -0.4 920,900 - +1.0 920,900 - +4.9 920,900 - +0.0 920,901 + +2.4 920,918 - +2.3 920,919 + +2.4 920,922 - -1.3 920,922 - -2.5 920,922 - -0.2 920,923 + -3.4 920,923 + -2.7 920,923 + -0.1 920,923 + -1.4 920,923 + +1.1 920,923 + +1.6 920,934 - +4.1 920,934 - -1.6 920,934 - -0.2 920,934 - -0.9 920,935 + -1.5 920,935 + -2.2 920,935 + +3.5 920,962 + +2.2 920,963 - -1.6 920,963 - +3.9 920,964 + -0.6 920,964 + -2.3 920,964 + -1.6 920,970 + +3.0 920,971 - +3.9 920,971 - -2.0 920,971 - -0.5 920,971 - +3.6 920,971 - -3.5 920,971 - +1.7 920,971 - +3.0 920,971 - -1.1 920,971 - -2.3 920,971 - -1.4 920,972 + -0.6 920,972 + -2.3 920,972 + +0.8 920,972 + +1.9 920,972 + +3.9 920,972 + -1.6 920,972 + -1.4 920,972 + +4.1 920,972 + -2.8 920,972 + -0.0 920,976 - +2.2 920,976 - +0.1 921,038 - -1.2 921,041 - +1.4 921,041 - +2.3 921,110 + MMJJ_RS04955 0.10 -0.3 921,166 - MMJJ_RS04955 0.14 +2.0 921,205 + MMJJ_RS04955 0.17 +4.2 921,205 + MMJJ_RS04955 0.17 +0.8 921,247 - MMJJ_RS04955 0.20 -0.1 921,385 - MMJJ_RS04955 0.30 +1.2 921,386 + MMJJ_RS04955 0.30 +2.3 921,390 + MMJJ_RS04955 0.30 -1.2 921,390 + MMJJ_RS04955 0.30 -0.1 921,583 - MMJJ_RS04955 0.44 +2.1 921,583 - MMJJ_RS04955 0.44 -2.2 921,584 + MMJJ_RS04955 0.44 +0.4 921,597 - MMJJ_RS04955 0.45 -1.7 921,597 - MMJJ_RS04955 0.45 +1.5 921,598 + MMJJ_RS04955 0.45 +1.6 921,692 - MMJJ_RS04955 0.52 -1.1 921,693 + MMJJ_RS04955 0.52 -1.9 921,731 - MMJJ_RS04955 0.54 -0.5 921,744 - MMJJ_RS04955 0.55 +4.6 921,745 + MMJJ_RS04955 0.55 +0.0 921,745 + MMJJ_RS04955 0.55 +2.6 921,767 - MMJJ_RS04955 0.57 +1.3 921,874 - MMJJ_RS04955 0.64 +5.4 921,958 - MMJJ_RS04955 0.70 -2.3 922,026 - MMJJ_RS04955 0.75 +0.6 922,026 - MMJJ_RS04955 0.75 -0.2 922,027 + MMJJ_RS04955 0.75 -1.4 922,171 - MMJJ_RS04955 0.85 +2.3 922,172 + MMJJ_RS04955 0.85 -1.4 922,242 - -1.0 922,243 + +1.9 922,256 - -1.5 922,303 - +0.8 922,307 - +4.5 922,316 - -1.9 922,316 - +0.6 922,317 + -0.1 922,317 + +1.2 922,322 - +4.3 922,330 - -2.9 922,353 - -1.3 922,375 + -1.8 922,747 + -0.6 922,757 - -1.1 922,762 - -0.6 922,803 - +0.4 922,821 - +1.1 922,943 - MMJJ_RS04965 0.43 -1.6 922,943 - MMJJ_RS04965 0.43 -1.4 922,943 - MMJJ_RS04965 0.43 -2.0 922,947 - MMJJ_RS04965 0.44 -3.1 922,947 - MMJJ_RS04965 0.44 +0.0 922,948 + MMJJ_RS04965 0.44 -1.4 922,966 + MMJJ_RS04965 0.50 +0.8 923,061 + MMJJ_RS04965 0.79 -0.2 923,065 - MMJJ_RS04965 0.81 +1.9 923,065 - MMJJ_RS04965 0.81 -1.8 923,068 + MMJJ_RS04965 0.81 +0.4 923,108 - -3.4 923,108 - +4.4 923,109 + -1.5 923,116 + -2.7 923,144 - +0.4 923,145 + -2.3 923,145 + -2.7 923,147 - -2.8 923,187 + -0.6 923,190 - -0.2 923,190 - +0.6 923,191 + -1.2 923,196 - -0.2 923,318 + MMJJ_RS04970 0.15 -1.2
Or see this region's nucleotide sequence