Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04875

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
911,056	-		MMJJ_RS04860	0.78	-1.5
911,057	+		MMJJ_RS04860	0.78	-0.2
911,057	+		MMJJ_RS04860	0.78	-0.8
911,060	-		MMJJ_RS04860	0.79	-2.5
911,071	-		MMJJ_RS04860	0.81	-1.2
911,071	-		MMJJ_RS04860	0.81	+0.1
911,075	+		MMJJ_RS04860	0.81	-0.5
911,082	-		MMJJ_RS04860	0.83	-2.7
911,093	-		MMJJ_RS04860	0.84	-0.5
911,097	-		MMJJ_RS04860	0.85	-1.7
911,097	-		MMJJ_RS04860	0.85	+2.3
911,097	-		MMJJ_RS04860	0.85	+2.2
911,097	-		MMJJ_RS04860	0.85	-2.1
911,097	-		MMJJ_RS04860	0.85	-1.2
911,097	-		MMJJ_RS04860	0.85	-2.9
911,097	-		MMJJ_RS04860	0.85	-0.9
911,098	+		MMJJ_RS04860	0.85	-4.0
911,098	+		MMJJ_RS04860	0.85	-0.9
911,098	+		MMJJ_RS04860	0.85	-1.3
911,098	+		MMJJ_RS04860	0.85	+0.3
911,099	-		MMJJ_RS04860	0.86	+0.2
911,099	-		MMJJ_RS04860	0.86	-0.3
911,099	-		MMJJ_RS04860	0.86	-3.5
911,100	+		MMJJ_RS04860	0.86	+2.1
911,100	+		MMJJ_RS04860	0.86	-1.9
911,109	+		MMJJ_RS04860	0.87	-1.6
911,109	+		MMJJ_RS04860	0.87	+2.3
911,112	-		MMJJ_RS04860	0.88	+1.4
911,112	-		MMJJ_RS04860	0.88	-1.9
911,112	-		MMJJ_RS04860	0.88	-1.4
911,113	+		MMJJ_RS04860	0.88	-0.6
911,117	+		MMJJ_RS04860	0.89	+3.5
911,117	+		MMJJ_RS04860	0.89	+1.8
911,117	+		MMJJ_RS04860	0.89	+1.8
911,130	+				+0.9
911,147	-				+1.9
911,150	-				-0.5
911,172	-				-2.0
911,223	-				+0.4
911,224	+				-1.1
911,224	+				+3.0
911,226	-				-1.0
911,226	-				-4.3
911,227	+				-0.5
911,228	-				+0.6
911,228	-				+3.5
911,229	+				+4.3
911,230	-				-0.9
911,230	-				-2.0
911,230	-				-2.0
911,231	+				+1.7
911,231	+				+0.7
911,231	+				-2.5
911,231	+				+2.3
911,267	+				-1.9
911,288	+				+2.9
911,288	+				+0.3
911,288	+				-0.6
911,313	-				-2.7
911,329	-				-1.9
911,330	+				+1.5
911,330	+				+0.7
911,371	-		MMJJ_RS04865	0.17	-3.7
911,404	+		MMJJ_RS04865	0.22	+0.1
911,404	+		MMJJ_RS04865	0.22	-1.7
911,404	+		MMJJ_RS04865	0.22	-0.7
911,404	+		MMJJ_RS04865	0.22	-1.5
911,410	-		MMJJ_RS04865	0.23	+1.0
911,410	-		MMJJ_RS04865	0.23	-1.5
911,410	-		MMJJ_RS04865	0.23	-1.7
911,415	-		MMJJ_RS04865	0.24	-0.1
911,490	-		MMJJ_RS04865	0.36	-2.2
911,496	-		MMJJ_RS04865	0.37	-1.2
911,527	-		MMJJ_RS04865	0.42	+1.4
911,528	+		MMJJ_RS04865	0.42	+1.0
911,569	-		MMJJ_RS04865	0.49	-1.8
911,578	-		MMJJ_RS04865	0.50	-1.4
911,578	-		MMJJ_RS04865	0.50	+0.2
911,579	+		MMJJ_RS04865	0.50	-2.4
911,579	+		MMJJ_RS04865	0.50	-0.6
911,579	+		MMJJ_RS04865	0.50	-3.7
911,647	-		MMJJ_RS04865	0.61	-1.4
911,647	-		MMJJ_RS04865	0.61	-0.7
911,648	+		MMJJ_RS04865	0.61	-2.9
911,648	+		MMJJ_RS04865	0.61	-2.4
911,648	+		MMJJ_RS04865	0.61	-0.2
911,680	-		MMJJ_RS04865	0.67	+1.2
911,680	-		MMJJ_RS04865	0.67	+0.7
911,681	+		MMJJ_RS04865	0.67	-1.0
911,681	+		MMJJ_RS04865	0.67	-1.6
911,682	-		MMJJ_RS04865	0.67	-2.1
911,683	+		MMJJ_RS04865	0.67	+0.2
911,722	-		MMJJ_RS04865	0.73	-1.2
911,722	-		MMJJ_RS04865	0.73	-0.2
911,722	-		MMJJ_RS04865	0.73	-1.2
911,722	-		MMJJ_RS04865	0.73	-1.6
911,722	-		MMJJ_RS04865	0.73	-0.6
911,722	-		MMJJ_RS04865	0.73	-2.5
911,722	-		MMJJ_RS04865	0.73	-0.0
911,723	+		MMJJ_RS04865	0.73	-0.9
911,723	+		MMJJ_RS04865	0.73	-2.2
911,723	+		MMJJ_RS04865	0.73	+1.4
911,746	-		MMJJ_RS04865	0.77	-2.2
911,747	+		MMJJ_RS04865	0.77	-0.3
911,747	+		MMJJ_RS04865	0.77	-0.2
911,747	+		MMJJ_RS04865	0.77	-0.4
911,801	-		MMJJ_RS04865	0.86	+0.1
911,802	+		MMJJ_RS04865	0.86	-0.9
911,826	-				-1.3
911,925	-				-0.2
911,925	-				+3.4
911,926	+				-0.1
911,986	+				+0.4
912,001	+		MMJJ_RS04870	0.83	-0.8
912,001	+		MMJJ_RS04870	0.83	+0.7
912,095	+		MMJJ_RS04875	0.82	-1.9
912,100	+				+0.4
912,100	+				-2.3
912,121	-				-1.2
912,136	-				+0.2
912,834	-				-1.6
912,848	-				-0.2
912,849	+				+1.4
912,849	+				-3.4
912,855	-				-0.2
912,856	+				-1.7
912,863	-				+3.1
912,864	+				-0.4
912,864	+				-3.1
912,864	+				+2.9
912,866	-				+0.5
912,868	-				-1.3
912,868	-				-2.4
912,869	+				-2.7
912,886	-				+0.6
912,899	+				-0.4
912,899	+				+1.7
912,915	+				+1.7
912,960	-				-1.1
912,963	-				-2.1