Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04805 and MMJJ_RS04810 are separated by 133 nucleotides MMJJ_RS04810 and MMJJ_RS04815 are separated by 168 nucleotides MMJJ_RS04815 and MMJJ_RS04820 are separated by 33 nucleotides MMJJ_RS04820 and MMJJ_RS04825 are separated by 8 nucleotides
MMJJ_RS04805: MMJJ_RS04805 - N-acetyl-gamma-glutamyl-phosphate reductase, at 900,427 to 901,458
_RS04805
MMJJ_RS04810: MMJJ_RS04810 - nitroreductase family protein, at 901,592 to 902,113
_RS04810
MMJJ_RS04815: MMJJ_RS04815 - TIM barrel protein, at 902,282 to 902,938
_RS04815
MMJJ_RS04820: MMJJ_RS04820 - hypothetical protein, at 902,972 to 903,781
_RS04820
MMJJ_RS04825: MMJJ_RS04825 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 903,790 to 905,070
_RS04825
Position (kb) 902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 901.293 kb on - strand, within MMJJ_RS04805 at 901.499 kb on + strand at 901.526 kb on - strand at 901.527 kb on + strand at 901.533 kb on - strand at 901.563 kb on + strand at 901.599 kb on - strand at 901.620 kb on - strand at 901.625 kb on - strand at 901.686 kb on + strand, within MMJJ_RS04810 at 901.754 kb on - strand, within MMJJ_RS04810 at 901.755 kb on + strand, within MMJJ_RS04810 at 901.761 kb on - strand, within MMJJ_RS04810 at 901.762 kb on + strand, within MMJJ_RS04810 at 901.776 kb on + strand, within MMJJ_RS04810 at 901.805 kb on - strand, within MMJJ_RS04810 at 901.805 kb on - strand at 901.805 kb on - strand, within MMJJ_RS04810 at 901.805 kb on - strand, within MMJJ_RS04810 at 901.808 kb on - strand, within MMJJ_RS04810 at 901.809 kb on + strand, within MMJJ_RS04810 at 901.811 kb on - strand, within MMJJ_RS04810 at 901.811 kb on - strand, within MMJJ_RS04810 at 901.889 kb on - strand, within MMJJ_RS04810 at 901.889 kb on - strand, within MMJJ_RS04810 at 901.889 kb on - strand, within MMJJ_RS04810 at 901.895 kb on - strand, within MMJJ_RS04810 at 901.896 kb on + strand, within MMJJ_RS04810 at 901.896 kb on + strand, within MMJJ_RS04810 at 901.977 kb on + strand, within MMJJ_RS04810 at 902.048 kb on - strand, within MMJJ_RS04810 at 902.076 kb on - strand at 902.076 kb on - strand at 902.077 kb on + strand at 902.102 kb on - strand at 902.113 kb on - strand at 902.113 kb on - strand at 902.114 kb on + strand at 902.114 kb on + strand at 902.115 kb on - strand at 902.115 kb on - strand at 902.143 kb on + strand at 902.147 kb on + strand at 902.170 kb on - strand at 902.171 kb on + strand at 902.171 kb on + strand at 902.172 kb on - strand at 902.172 kb on - strand at 902.172 kb on - strand at 902.196 kb on - strand at 902.198 kb on - strand at 902.198 kb on - strand at 902.199 kb on + strand at 902.199 kb on + strand at 902.199 kb on + strand at 902.199 kb on + strand at 902.247 kb on + strand at 902.281 kb on - strand at 902.282 kb on + strand at 902.287 kb on + strand at 902.332 kb on - strand at 902.413 kb on + strand, within MMJJ_RS04815 at 902.471 kb on + strand, within MMJJ_RS04815 at 902.479 kb on - strand, within MMJJ_RS04815 at 902.494 kb on + strand, within MMJJ_RS04815 at 902.498 kb on + strand, within MMJJ_RS04815 at 902.567 kb on - strand, within MMJJ_RS04815 at 902.641 kb on + strand, within MMJJ_RS04815 at 902.686 kb on + strand, within MMJJ_RS04815 at 902.759 kb on - strand, within MMJJ_RS04815 at 902.759 kb on - strand, within MMJJ_RS04815 at 902.839 kb on + strand, within MMJJ_RS04815 at 902.872 kb on - strand, within MMJJ_RS04815 at 902.914 kb on - strand at 902.915 kb on + strand at 902.915 kb on + strand at 902.918 kb on - strand at 902.936 kb on - strand at 902.937 kb on + strand at 902.946 kb on - strand at 902.946 kb on - strand at 902.947 kb on + strand at 902.947 kb on + strand at 902.947 kb on + strand at 902.953 kb on + strand at 902.957 kb on - strand at 902.957 kb on - strand at 902.961 kb on - strand at 902.961 kb on - strand at 902.961 kb on - strand at 902.962 kb on + strand at 902.962 kb on + strand at 902.962 kb on + strand at 903.006 kb on - strand at 903.109 kb on - strand, within MMJJ_RS04820 at 903.213 kb on - strand, within MMJJ_RS04820 at 903.214 kb on + strand, within MMJJ_RS04820 at 903.221 kb on + strand, within MMJJ_RS04820 at 903.248 kb on + strand, within MMJJ_RS04820 at 903.313 kb on - strand, within MMJJ_RS04820 at 903.344 kb on - strand, within MMJJ_RS04820 at 903.371 kb on - strand, within MMJJ_RS04820 at 903.371 kb on - strand, within MMJJ_RS04820 at 903.385 kb on + strand, within MMJJ_RS04820 at 903.421 kb on + strand, within MMJJ_RS04820 at 903.439 kb on + strand, within MMJJ_RS04820 at 903.491 kb on - strand, within MMJJ_RS04820 at 903.491 kb on - strand, within MMJJ_RS04820 at 903.491 kb on - strand, within MMJJ_RS04820 at 903.492 kb on + strand, within MMJJ_RS04820 at 903.492 kb on + strand, within MMJJ_RS04820 at 903.494 kb on - strand, within MMJJ_RS04820 at 903.496 kb on - strand, within MMJJ_RS04820 at 903.496 kb on - strand, within MMJJ_RS04820 at 903.496 kb on - strand, within MMJJ_RS04820 at 903.519 kb on - strand, within MMJJ_RS04820 at 903.520 kb on + strand, within MMJJ_RS04820 at 903.687 kb on - strand, within MMJJ_RS04820 at 903.697 kb on - strand, within MMJJ_RS04820 at 903.697 kb on - strand, within MMJJ_RS04820 at 903.699 kb on - strand, within MMJJ_RS04820 at 903.699 kb on - strand, within MMJJ_RS04820 at 903.700 kb on + strand, within MMJJ_RS04820 at 903.700 kb on + strand, within MMJJ_RS04820 at 903.702 kb on + strand at 903.734 kb on - strand at 903.736 kb on - strand at 903.736 kb on - strand at 903.737 kb on + strand at 903.737 kb on + strand at 903.740 kb on + strand at 903.748 kb on - strand at 903.748 kb on - strand at 903.749 kb on + strand at 903.752 kb on - strand at 903.752 kb on - strand at 903.806 kb on - strand at 903.810 kb on + strand at 903.813 kb on + strand at 903.852 kb on - strand at 903.887 kb on - strand at 903.933 kb on - strand, within MMJJ_RS04825 at 903.934 kb on + strand, within MMJJ_RS04825
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 901,293 - MMJJ_RS04805 0.84 -1.2 901,499 + -0.9 901,526 - +0.6 901,527 + -0.1 901,533 - +1.3 901,563 + +3.3 901,599 - -3.1 901,620 - +1.8 901,625 - +0.1 901,686 + MMJJ_RS04810 0.18 -0.6 901,754 - MMJJ_RS04810 0.31 +3.5 901,755 + MMJJ_RS04810 0.31 -3.1 901,761 - MMJJ_RS04810 0.32 -0.5 901,762 + MMJJ_RS04810 0.33 +1.6 901,776 + MMJJ_RS04810 0.35 +1.4 901,805 - MMJJ_RS04810 0.41 -1.8 901,805 - -1.4 901,805 - MMJJ_RS04810 0.41 +0.4 901,805 - MMJJ_RS04810 0.41 -2.8 901,808 - MMJJ_RS04810 0.41 +0.5 901,809 + MMJJ_RS04810 0.42 -0.0 901,811 - MMJJ_RS04810 0.42 +2.3 901,811 - MMJJ_RS04810 0.42 +0.6 901,889 - MMJJ_RS04810 0.57 -0.6 901,889 - MMJJ_RS04810 0.57 -1.8 901,889 - MMJJ_RS04810 0.57 +2.5 901,895 - MMJJ_RS04810 0.58 +1.6 901,896 + MMJJ_RS04810 0.58 -1.6 901,896 + MMJJ_RS04810 0.58 +1.3 901,977 + MMJJ_RS04810 0.74 -0.1 902,048 - MMJJ_RS04810 0.87 +1.5 902,076 - +0.9 902,076 - +3.1 902,077 + -2.9 902,102 - +1.3 902,113 - +1.6 902,113 - +0.9 902,114 + +0.9 902,114 + -3.4 902,115 - +3.2 902,115 - +1.6 902,143 + +0.9 902,147 + +2.9 902,170 - -1.3 902,171 + -0.9 902,171 + +1.7 902,172 - +0.4 902,172 - +0.7 902,172 - -2.0 902,196 - -2.9 902,198 - -0.4 902,198 - -2.5 902,199 + -1.3 902,199 + +4.3 902,199 + -0.2 902,199 + +2.4 902,247 + +3.3 902,281 - -2.6 902,282 + +2.8 902,287 + +0.8 902,332 - -0.6 902,413 + MMJJ_RS04815 0.20 +2.7 902,471 + MMJJ_RS04815 0.29 +2.1 902,479 - MMJJ_RS04815 0.30 -1.1 902,494 + MMJJ_RS04815 0.32 +0.3 902,498 + MMJJ_RS04815 0.33 -1.2 902,567 - MMJJ_RS04815 0.43 +1.8 902,641 + MMJJ_RS04815 0.55 -3.1 902,686 + MMJJ_RS04815 0.61 +1.8 902,759 - MMJJ_RS04815 0.73 +3.0 902,759 - MMJJ_RS04815 0.73 -1.7 902,839 + MMJJ_RS04815 0.85 +2.1 902,872 - MMJJ_RS04815 0.90 -2.9 902,914 - -1.4 902,915 + +1.3 902,915 + +1.7 902,918 - +3.0 902,936 - +3.8 902,937 + -2.1 902,946 - +2.8 902,946 - +1.4 902,947 + +1.1 902,947 + -1.5 902,947 + +1.8 902,953 + +0.8 902,957 - +0.5 902,957 - +0.6 902,961 - +1.2 902,961 - -3.5 902,961 - +1.5 902,962 + -1.4 902,962 + +1.4 902,962 + +0.5 903,006 - -1.2 903,109 - MMJJ_RS04820 0.17 -1.2 903,213 - MMJJ_RS04820 0.30 +0.6 903,214 + MMJJ_RS04820 0.30 -0.2 903,221 + MMJJ_RS04820 0.31 -1.6 903,248 + MMJJ_RS04820 0.34 -1.8 903,313 - MMJJ_RS04820 0.42 +1.1 903,344 - MMJJ_RS04820 0.46 -1.5 903,371 - MMJJ_RS04820 0.49 +0.5 903,371 - MMJJ_RS04820 0.49 +4.0 903,385 + MMJJ_RS04820 0.51 -0.6 903,421 + MMJJ_RS04820 0.55 +0.4 903,439 + MMJJ_RS04820 0.58 -1.9 903,491 - MMJJ_RS04820 0.64 +0.7 903,491 - MMJJ_RS04820 0.64 +0.6 903,491 - MMJJ_RS04820 0.64 +5.9 903,492 + MMJJ_RS04820 0.64 -0.0 903,492 + MMJJ_RS04820 0.64 -2.2 903,494 - MMJJ_RS04820 0.64 +1.6 903,496 - MMJJ_RS04820 0.65 -1.8 903,496 - MMJJ_RS04820 0.65 -1.0 903,496 - MMJJ_RS04820 0.65 +0.1 903,519 - MMJJ_RS04820 0.68 -1.1 903,520 + MMJJ_RS04820 0.68 -2.7 903,687 - MMJJ_RS04820 0.88 +1.7 903,697 - MMJJ_RS04820 0.90 +2.4 903,697 - MMJJ_RS04820 0.90 +1.8 903,699 - MMJJ_RS04820 0.90 -2.3 903,699 - MMJJ_RS04820 0.90 -3.0 903,700 + MMJJ_RS04820 0.90 -1.4 903,700 + MMJJ_RS04820 0.90 -0.3 903,702 + -0.9 903,734 - -3.1 903,736 - -1.2 903,736 - -0.2 903,737 + +0.1 903,737 + -1.3 903,740 + +0.4 903,748 - -0.9 903,748 - +0.4 903,749 + -1.3 903,752 - +1.6 903,752 - +2.1 903,806 - -2.2 903,810 + +2.9 903,813 + +2.8 903,852 - +2.2 903,887 - -0.6 903,933 - MMJJ_RS04825 0.11 -1.5 903,934 + MMJJ_RS04825 0.11 -0.6
Or see this region's nucleotide sequence