Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04800

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04790 and MMJJ_RS04795 are separated by 12 nucleotidesMMJJ_RS04795 and MMJJ_RS04800 are separated by 46 nucleotidesMMJJ_RS04800 and MMJJ_RS04805 are separated by 23 nucleotides MMJJ_RS04790: MMJJ_RS04790 - biotin--[acetyl-CoA-carboxylase] ligase, at 898,333 to 899,058 _RS04790 MMJJ_RS04795: MMJJ_RS04795 - MBL fold metallo-hydrolase, at 899,071 to 899,688 _RS04795 MMJJ_RS04800: MMJJ_RS04800 - 2-phospho-L-lactate guanylyltransferase, at 899,735 to 900,403 _RS04800 MMJJ_RS04805: MMJJ_RS04805 - N-acetyl-gamma-glutamyl-phosphate reductase, at 900,427 to 901,458 _RS04805 Position (kb) 899 900 901Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 898.790 kb on - strand, within MMJJ_RS04790at 898.850 kb on - strand, within MMJJ_RS04790at 898.851 kb on + strand, within MMJJ_RS04790at 898.924 kb on + strandat 898.931 kb on - strand, within MMJJ_RS04790at 899.056 kb on - strandat 899.068 kb on + strandat 899.079 kb on - strandat 899.113 kb on - strandat 899.117 kb on - strandat 899.120 kb on - strandat 899.144 kb on - strand, within MMJJ_RS04795at 899.192 kb on - strand, within MMJJ_RS04795at 899.192 kb on - strand, within MMJJ_RS04795at 899.193 kb on + strand, within MMJJ_RS04795at 899.193 kb on + strand, within MMJJ_RS04795at 899.193 kb on + strand, within MMJJ_RS04795at 899.197 kb on - strand, within MMJJ_RS04795at 899.198 kb on + strand, within MMJJ_RS04795at 899.215 kb on - strand, within MMJJ_RS04795at 899.216 kb on + strand, within MMJJ_RS04795at 899.216 kb on + strand, within MMJJ_RS04795at 899.216 kb on + strand, within MMJJ_RS04795at 899.220 kb on - strand, within MMJJ_RS04795at 899.221 kb on + strand, within MMJJ_RS04795at 899.306 kb on - strand, within MMJJ_RS04795at 899.307 kb on + strand, within MMJJ_RS04795at 899.307 kb on + strand, within MMJJ_RS04795at 899.307 kb on + strand, within MMJJ_RS04795at 899.341 kb on + strand, within MMJJ_RS04795at 899.341 kb on + strand, within MMJJ_RS04795at 899.345 kb on - strand, within MMJJ_RS04795at 899.349 kb on - strand, within MMJJ_RS04795at 899.397 kb on + strand, within MMJJ_RS04795at 899.397 kb on + strand, within MMJJ_RS04795at 899.397 kb on + strand, within MMJJ_RS04795at 899.417 kb on - strand, within MMJJ_RS04795at 899.441 kb on - strand, within MMJJ_RS04795at 899.441 kb on - strand, within MMJJ_RS04795at 899.441 kb on - strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.442 kb on + strand, within MMJJ_RS04795at 899.472 kb on + strand, within MMJJ_RS04795at 899.477 kb on - strand, within MMJJ_RS04795at 899.478 kb on + strand, within MMJJ_RS04795at 899.478 kb on + strand, within MMJJ_RS04795at 899.480 kb on - strand, within MMJJ_RS04795at 899.481 kb on + strand, within MMJJ_RS04795at 899.604 kb on - strand, within MMJJ_RS04795at 899.624 kb on - strand, within MMJJ_RS04795at 899.625 kb on + strand, within MMJJ_RS04795at 899.625 kb on + strand, within MMJJ_RS04795at 899.626 kb on - strand, within MMJJ_RS04795at 899.654 kb on - strandat 899.678 kb on - strandat 899.679 kb on + strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.682 kb on - strandat 899.683 kb on + strandat 899.683 kb on + strandat 899.717 kb on + strandat 899.749 kb on + strandat 899.775 kb on - strandat 899.838 kb on - strand, within MMJJ_RS04800at 899.838 kb on - strand, within MMJJ_RS04800at 899.838 kb on - strand, within MMJJ_RS04800at 899.850 kb on + strand, within MMJJ_RS04800at 899.883 kb on + strand, within MMJJ_RS04800at 899.963 kb on + strand, within MMJJ_RS04800at 900.073 kb on - strand, within MMJJ_RS04800at 900.253 kb on - strand, within MMJJ_RS04800at 900.254 kb on + strand, within MMJJ_RS04800at 900.254 kb on + strand, within MMJJ_RS04800at 900.261 kb on - strand, within MMJJ_RS04800at 900.262 kb on + strand, within MMJJ_RS04800at 900.267 kb on - strand, within MMJJ_RS04800at 900.268 kb on + strand, within MMJJ_RS04800at 900.268 kb on + strand, within MMJJ_RS04800at 900.286 kb on + strandat 900.324 kb on + strand, within MMJJ_RS04800at 900.324 kb on + strand, within MMJJ_RS04800at 900.330 kb on + strand, within MMJJ_RS04800at 900.330 kb on + strandat 900.429 kb on + strandat 900.483 kb on - strandat 900.874 kb on - strand, within MMJJ_RS04805at 901.178 kb on + strand, within MMJJ_RS04805at 901.293 kb on - strand, within MMJJ_RS04805

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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898,790 - MMJJ_RS04790 0.63 +0.4
898,850 - MMJJ_RS04790 0.71 -1.6
898,851 + MMJJ_RS04790 0.71 -0.9
898,924 + +1.4
898,931 - MMJJ_RS04790 0.82 -1.8
899,056 - +0.8
899,068 + -2.2
899,079 - -2.5
899,113 - +2.6
899,117 - -3.3
899,120 - -1.1
899,144 - MMJJ_RS04795 0.12 +1.0
899,192 - MMJJ_RS04795 0.20 +0.1
899,192 - MMJJ_RS04795 0.20 +1.3
899,193 + MMJJ_RS04795 0.20 -1.5
899,193 + MMJJ_RS04795 0.20 +2.3
899,193 + MMJJ_RS04795 0.20 -2.9
899,197 - MMJJ_RS04795 0.20 +1.2
899,198 + MMJJ_RS04795 0.21 -0.6
899,215 - MMJJ_RS04795 0.23 -1.3
899,216 + MMJJ_RS04795 0.23 +1.0
899,216 + MMJJ_RS04795 0.23 -0.2
899,216 + MMJJ_RS04795 0.23 +1.9
899,220 - MMJJ_RS04795 0.24 -1.5
899,221 + MMJJ_RS04795 0.24 +1.3
899,306 - MMJJ_RS04795 0.38 +0.5
899,307 + MMJJ_RS04795 0.38 -1.0
899,307 + MMJJ_RS04795 0.38 +1.5
899,307 + MMJJ_RS04795 0.38 +1.3
899,341 + MMJJ_RS04795 0.44 +0.4
899,341 + MMJJ_RS04795 0.44 -1.4
899,345 - MMJJ_RS04795 0.44 +3.0
899,349 - MMJJ_RS04795 0.45 -3.4
899,397 + MMJJ_RS04795 0.53 -1.3
899,397 + MMJJ_RS04795 0.53 +1.0
899,397 + MMJJ_RS04795 0.53 -0.4
899,417 - MMJJ_RS04795 0.56 -0.0
899,441 - MMJJ_RS04795 0.60 +2.1
899,441 - MMJJ_RS04795 0.60 -2.3
899,441 - MMJJ_RS04795 0.60 +1.4
899,442 + MMJJ_RS04795 0.60 +0.8
899,442 + MMJJ_RS04795 0.60 +2.8
899,442 + MMJJ_RS04795 0.60 -3.1
899,442 + MMJJ_RS04795 0.60 -2.0
899,442 + MMJJ_RS04795 0.60 +2.5
899,442 + MMJJ_RS04795 0.60 +3.2
899,472 + MMJJ_RS04795 0.65 -0.6
899,477 - MMJJ_RS04795 0.66 -0.8
899,478 + MMJJ_RS04795 0.66 -1.6
899,478 + MMJJ_RS04795 0.66 +0.2
899,480 - MMJJ_RS04795 0.66 +0.0
899,481 + MMJJ_RS04795 0.66 -2.8
899,604 - MMJJ_RS04795 0.86 -0.9
899,624 - MMJJ_RS04795 0.89 -0.6
899,625 + MMJJ_RS04795 0.90 -1.6
899,625 + MMJJ_RS04795 0.90 +0.7
899,626 - MMJJ_RS04795 0.90 +0.7
899,654 - -1.9
899,678 - -1.8
899,679 + +1.9
899,682 - -1.2
899,682 - +1.4
899,682 - -1.8
899,682 - +0.3
899,682 - -0.0
899,682 - -1.2
899,683 + -2.3
899,683 + -2.3
899,717 + -3.4
899,749 + -0.2
899,775 - -0.9
899,838 - MMJJ_RS04800 0.15 -1.2
899,838 - MMJJ_RS04800 0.15 -1.6
899,838 - MMJJ_RS04800 0.15 +0.4
899,850 + MMJJ_RS04800 0.17 +0.8
899,883 + MMJJ_RS04800 0.22 -0.6
899,963 + MMJJ_RS04800 0.34 -1.4
900,073 - MMJJ_RS04800 0.51 -0.9
900,253 - MMJJ_RS04800 0.77 -1.4
900,254 + MMJJ_RS04800 0.78 -0.4
900,254 + MMJJ_RS04800 0.78 -1.2
900,261 - MMJJ_RS04800 0.79 -0.9
900,262 + MMJJ_RS04800 0.79 +0.6
900,267 - MMJJ_RS04800 0.80 +1.4
900,268 + MMJJ_RS04800 0.80 -1.4
900,268 + MMJJ_RS04800 0.80 -0.6
900,286 + +0.4
900,324 + MMJJ_RS04800 0.88 -1.4
900,324 + MMJJ_RS04800 0.88 -1.6
900,330 + MMJJ_RS04800 0.89 +0.4
900,330 + +1.4
900,429 + +4.0
900,483 - +0.8
900,874 - MMJJ_RS04805 0.43 +0.4
901,178 + MMJJ_RS04805 0.73 -1.6
901,293 - MMJJ_RS04805 0.84 -1.2

Or see this region's nucleotide sequence