Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04775 and MMJJ_RS04780 are separated by 3 nucleotides MMJJ_RS04780 and MMJJ_RS04785 are separated by 12 nucleotides MMJJ_RS04785 and MMJJ_RS04790 overlap by 20 nucleotides MMJJ_RS04790 and MMJJ_RS04795 are separated by 12 nucleotides MMJJ_RS04795 and MMJJ_RS04800 are separated by 46 nucleotides
MMJJ_RS04775: MMJJ_RS04775 - DNA-binding protein, at 896,721 to 897,632
_RS04775
MMJJ_RS04780: MMJJ_RS04780 - nucleic acid-binding protein, at 897,636 to 897,953
_RS04780
MMJJ_RS04785: MMJJ_RS04785 - OB-fold nucleic acid binding domain-containing protein, at 897,966 to 898,352
_RS04785
MMJJ_RS04790: MMJJ_RS04790 - biotin--[acetyl-CoA-carboxylase] ligase, at 898,333 to 899,058
_RS04790
MMJJ_RS04795: MMJJ_RS04795 - MBL fold metallo-hydrolase, at 899,071 to 899,688
_RS04795
MMJJ_RS04800: MMJJ_RS04800 - 2-phospho-L-lactate guanylyltransferase, at 899,735 to 900,403
_RS04800
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 897.364 kb on - strand, within MMJJ_RS04775 at 897.413 kb on + strand, within MMJJ_RS04775 at 897.413 kb on + strand, within MMJJ_RS04775 at 897.417 kb on + strand, within MMJJ_RS04775 at 897.423 kb on + strand, within MMJJ_RS04775 at 897.423 kb on + strand, within MMJJ_RS04775 at 897.518 kb on + strand, within MMJJ_RS04775 at 897.520 kb on - strand, within MMJJ_RS04775 at 897.538 kb on - strand, within MMJJ_RS04775 at 897.539 kb on + strand, within MMJJ_RS04775 at 897.540 kb on - strand, within MMJJ_RS04775 at 897.541 kb on + strand at 897.541 kb on + strand at 897.554 kb on + strand at 897.570 kb on + strand at 897.596 kb on - strand at 897.597 kb on + strand at 897.598 kb on - strand at 897.639 kb on - strand at 897.640 kb on + strand at 897.802 kb on - strand, within MMJJ_RS04780 at 897.803 kb on + strand, within MMJJ_RS04780 at 897.806 kb on - strand, within MMJJ_RS04780 at 897.807 kb on + strand, within MMJJ_RS04780 at 897.863 kb on - strand, within MMJJ_RS04780 at 897.864 kb on + strand, within MMJJ_RS04780 at 897.883 kb on - strand, within MMJJ_RS04780 at 897.884 kb on + strand, within MMJJ_RS04780 at 897.884 kb on + strand, within MMJJ_RS04780 at 898.003 kb on - strand at 898.004 kb on + strand at 898.050 kb on - strand, within MMJJ_RS04785 at 898.050 kb on - strand, within MMJJ_RS04785 at 898.050 kb on - strand, within MMJJ_RS04785 at 898.052 kb on - strand, within MMJJ_RS04785 at 898.052 kb on - strand, within MMJJ_RS04785 at 898.053 kb on + strand, within MMJJ_RS04785 at 898.053 kb on + strand, within MMJJ_RS04785 at 898.053 kb on + strand, within MMJJ_RS04785 at 898.062 kb on + strand, within MMJJ_RS04785 at 898.093 kb on - strand, within MMJJ_RS04785 at 898.103 kb on + strand, within MMJJ_RS04785 at 898.145 kb on - strand, within MMJJ_RS04785 at 898.145 kb on - strand, within MMJJ_RS04785 at 898.268 kb on + strand, within MMJJ_RS04785 at 898.277 kb on - strand, within MMJJ_RS04785 at 898.277 kb on - strand, within MMJJ_RS04785 at 898.277 kb on - strand, within MMJJ_RS04785 at 898.278 kb on + strand, within MMJJ_RS04785 at 898.281 kb on - strand, within MMJJ_RS04785 at 898.282 kb on + strand, within MMJJ_RS04785 at 898.282 kb on + strand, within MMJJ_RS04785 at 898.282 kb on + strand, within MMJJ_RS04785 at 898.282 kb on + strand, within MMJJ_RS04785 at 898.282 kb on + strand, within MMJJ_RS04785 at 898.282 kb on + strand, within MMJJ_RS04785 at 898.282 kb on + strand, within MMJJ_RS04785 at 898.285 kb on - strand, within MMJJ_RS04785 at 898.286 kb on + strand, within MMJJ_RS04785 at 898.286 kb on + strand, within MMJJ_RS04785 at 898.330 kb on - strand at 898.336 kb on - strand at 898.336 kb on - strand at 898.337 kb on + strand at 898.337 kb on + strand at 898.337 kb on + strand at 898.351 kb on + strand at 898.351 kb on + strand at 898.411 kb on - strand, within MMJJ_RS04790 at 898.412 kb on + strand, within MMJJ_RS04790 at 898.412 kb on + strand, within MMJJ_RS04790 at 898.485 kb on - strand, within MMJJ_RS04790 at 898.602 kb on + strand, within MMJJ_RS04790 at 898.722 kb on + strand at 898.790 kb on - strand, within MMJJ_RS04790 at 898.850 kb on - strand, within MMJJ_RS04790 at 898.851 kb on + strand, within MMJJ_RS04790 at 898.924 kb on + strand at 898.931 kb on - strand, within MMJJ_RS04790 at 899.056 kb on - strand at 899.068 kb on + strand at 899.079 kb on - strand at 899.113 kb on - strand at 899.117 kb on - strand at 899.120 kb on - strand at 899.144 kb on - strand, within MMJJ_RS04795 at 899.192 kb on - strand, within MMJJ_RS04795 at 899.192 kb on - strand, within MMJJ_RS04795 at 899.193 kb on + strand, within MMJJ_RS04795 at 899.193 kb on + strand, within MMJJ_RS04795 at 899.193 kb on + strand, within MMJJ_RS04795 at 899.197 kb on - strand, within MMJJ_RS04795 at 899.198 kb on + strand, within MMJJ_RS04795 at 899.215 kb on - strand, within MMJJ_RS04795 at 899.216 kb on + strand, within MMJJ_RS04795 at 899.216 kb on + strand, within MMJJ_RS04795 at 899.216 kb on + strand, within MMJJ_RS04795 at 899.220 kb on - strand, within MMJJ_RS04795 at 899.221 kb on + strand, within MMJJ_RS04795 at 899.306 kb on - strand, within MMJJ_RS04795 at 899.307 kb on + strand, within MMJJ_RS04795 at 899.307 kb on + strand, within MMJJ_RS04795 at 899.307 kb on + strand, within MMJJ_RS04795 at 899.341 kb on + strand, within MMJJ_RS04795 at 899.341 kb on + strand, within MMJJ_RS04795 at 899.345 kb on - strand, within MMJJ_RS04795 at 899.349 kb on - strand, within MMJJ_RS04795 at 899.397 kb on + strand, within MMJJ_RS04795 at 899.397 kb on + strand, within MMJJ_RS04795 at 899.397 kb on + strand, within MMJJ_RS04795 at 899.417 kb on - strand, within MMJJ_RS04795 at 899.441 kb on - strand, within MMJJ_RS04795 at 899.441 kb on - strand, within MMJJ_RS04795 at 899.441 kb on - strand, within MMJJ_RS04795 at 899.442 kb on + strand, within MMJJ_RS04795 at 899.442 kb on + strand, within MMJJ_RS04795 at 899.442 kb on + strand, within MMJJ_RS04795 at 899.442 kb on + strand, within MMJJ_RS04795 at 899.442 kb on + strand, within MMJJ_RS04795 at 899.442 kb on + strand, within MMJJ_RS04795 at 899.472 kb on + strand, within MMJJ_RS04795 at 899.477 kb on - strand, within MMJJ_RS04795 at 899.478 kb on + strand, within MMJJ_RS04795 at 899.478 kb on + strand, within MMJJ_RS04795 at 899.480 kb on - strand, within MMJJ_RS04795 at 899.481 kb on + strand, within MMJJ_RS04795 at 899.604 kb on - strand, within MMJJ_RS04795 at 899.624 kb on - strand, within MMJJ_RS04795 at 899.625 kb on + strand, within MMJJ_RS04795 at 899.625 kb on + strand, within MMJJ_RS04795 at 899.626 kb on - strand, within MMJJ_RS04795 at 899.654 kb on - strand at 899.678 kb on - strand at 899.679 kb on + strand at 899.682 kb on - strand at 899.682 kb on - strand at 899.682 kb on - strand at 899.682 kb on - strand at 899.682 kb on - strand at 899.682 kb on - strand at 899.683 kb on + strand at 899.683 kb on + strand at 899.717 kb on + strand at 899.749 kb on + strand at 899.775 kb on - strand at 899.838 kb on - strand, within MMJJ_RS04800 at 899.838 kb on - strand, within MMJJ_RS04800 at 899.838 kb on - strand, within MMJJ_RS04800 at 899.850 kb on + strand, within MMJJ_RS04800 at 899.883 kb on + strand, within MMJJ_RS04800 at 899.963 kb on + strand, within MMJJ_RS04800
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 897,364 - MMJJ_RS04775 0.71 -1.2 897,413 + MMJJ_RS04775 0.76 +0.2 897,413 + MMJJ_RS04775 0.76 +2.9 897,417 + MMJJ_RS04775 0.76 +1.2 897,423 + MMJJ_RS04775 0.77 +1.4 897,423 + MMJJ_RS04775 0.77 -1.1 897,518 + MMJJ_RS04775 0.87 -0.9 897,520 - MMJJ_RS04775 0.88 +1.4 897,538 - MMJJ_RS04775 0.90 -1.4 897,539 + MMJJ_RS04775 0.90 +1.4 897,540 - MMJJ_RS04775 0.90 -2.5 897,541 + +2.4 897,541 + +3.9 897,554 + -1.7 897,570 + -1.8 897,596 - +1.1 897,597 + +0.8 897,598 - -0.5 897,639 - -1.2 897,640 + -2.1 897,802 - MMJJ_RS04780 0.52 -0.2 897,803 + MMJJ_RS04780 0.53 -0.5 897,806 - MMJJ_RS04780 0.53 +1.0 897,807 + MMJJ_RS04780 0.54 +0.6 897,863 - MMJJ_RS04780 0.71 -1.4 897,864 + MMJJ_RS04780 0.72 -2.3 897,883 - MMJJ_RS04780 0.78 +1.0 897,884 + MMJJ_RS04780 0.78 -0.9 897,884 + MMJJ_RS04780 0.78 -1.4 898,003 - +2.0 898,004 + -2.6 898,050 - MMJJ_RS04785 0.22 +0.3 898,050 - MMJJ_RS04785 0.22 -2.0 898,050 - MMJJ_RS04785 0.22 -0.9 898,052 - MMJJ_RS04785 0.22 -1.9 898,052 - MMJJ_RS04785 0.22 -2.2 898,053 + MMJJ_RS04785 0.22 +0.2 898,053 + MMJJ_RS04785 0.22 -3.5 898,053 + MMJJ_RS04785 0.22 +1.8 898,062 + MMJJ_RS04785 0.25 +2.1 898,093 - MMJJ_RS04785 0.33 -1.3 898,103 + MMJJ_RS04785 0.35 -0.6 898,145 - MMJJ_RS04785 0.46 -0.2 898,145 - MMJJ_RS04785 0.46 -0.6 898,268 + MMJJ_RS04785 0.78 +1.6 898,277 - MMJJ_RS04785 0.80 -1.3 898,277 - MMJJ_RS04785 0.80 -1.7 898,277 - MMJJ_RS04785 0.80 -2.9 898,278 + MMJJ_RS04785 0.81 -2.9 898,281 - MMJJ_RS04785 0.81 +1.1 898,282 + MMJJ_RS04785 0.82 -0.2 898,282 + MMJJ_RS04785 0.82 -0.6 898,282 + MMJJ_RS04785 0.82 +0.2 898,282 + MMJJ_RS04785 0.82 +2.1 898,282 + MMJJ_RS04785 0.82 +1.3 898,282 + MMJJ_RS04785 0.82 +2.5 898,282 + MMJJ_RS04785 0.82 +1.6 898,285 - MMJJ_RS04785 0.82 +1.8 898,286 + MMJJ_RS04785 0.83 +0.3 898,286 + MMJJ_RS04785 0.83 +0.8 898,330 - -1.6 898,336 - -0.8 898,336 - -0.2 898,337 + -2.1 898,337 + +1.1 898,337 + +1.9 898,351 + -1.2 898,351 + -0.6 898,411 - MMJJ_RS04790 0.11 -0.2 898,412 + MMJJ_RS04790 0.11 -0.8 898,412 + MMJJ_RS04790 0.11 +0.4 898,485 - MMJJ_RS04790 0.21 -0.6 898,602 + MMJJ_RS04790 0.37 -0.6 898,722 + +0.4 898,790 - MMJJ_RS04790 0.63 +0.4 898,850 - MMJJ_RS04790 0.71 -1.6 898,851 + MMJJ_RS04790 0.71 -0.9 898,924 + +1.4 898,931 - MMJJ_RS04790 0.82 -1.8 899,056 - +0.8 899,068 + -2.2 899,079 - -2.5 899,113 - +2.6 899,117 - -3.3 899,120 - -1.1 899,144 - MMJJ_RS04795 0.12 +1.0 899,192 - MMJJ_RS04795 0.20 +0.1 899,192 - MMJJ_RS04795 0.20 +1.3 899,193 + MMJJ_RS04795 0.20 -1.5 899,193 + MMJJ_RS04795 0.20 +2.3 899,193 + MMJJ_RS04795 0.20 -2.9 899,197 - MMJJ_RS04795 0.20 +1.2 899,198 + MMJJ_RS04795 0.21 -0.6 899,215 - MMJJ_RS04795 0.23 -1.3 899,216 + MMJJ_RS04795 0.23 +1.0 899,216 + MMJJ_RS04795 0.23 -0.2 899,216 + MMJJ_RS04795 0.23 +1.9 899,220 - MMJJ_RS04795 0.24 -1.5 899,221 + MMJJ_RS04795 0.24 +1.3 899,306 - MMJJ_RS04795 0.38 +0.5 899,307 + MMJJ_RS04795 0.38 -1.0 899,307 + MMJJ_RS04795 0.38 +1.5 899,307 + MMJJ_RS04795 0.38 +1.3 899,341 + MMJJ_RS04795 0.44 +0.4 899,341 + MMJJ_RS04795 0.44 -1.4 899,345 - MMJJ_RS04795 0.44 +3.0 899,349 - MMJJ_RS04795 0.45 -3.4 899,397 + MMJJ_RS04795 0.53 -1.3 899,397 + MMJJ_RS04795 0.53 +1.0 899,397 + MMJJ_RS04795 0.53 -0.4 899,417 - MMJJ_RS04795 0.56 -0.0 899,441 - MMJJ_RS04795 0.60 +2.1 899,441 - MMJJ_RS04795 0.60 -2.3 899,441 - MMJJ_RS04795 0.60 +1.4 899,442 + MMJJ_RS04795 0.60 +0.8 899,442 + MMJJ_RS04795 0.60 +2.8 899,442 + MMJJ_RS04795 0.60 -3.1 899,442 + MMJJ_RS04795 0.60 -2.0 899,442 + MMJJ_RS04795 0.60 +2.5 899,442 + MMJJ_RS04795 0.60 +3.2 899,472 + MMJJ_RS04795 0.65 -0.6 899,477 - MMJJ_RS04795 0.66 -0.8 899,478 + MMJJ_RS04795 0.66 -1.6 899,478 + MMJJ_RS04795 0.66 +0.2 899,480 - MMJJ_RS04795 0.66 +0.0 899,481 + MMJJ_RS04795 0.66 -2.8 899,604 - MMJJ_RS04795 0.86 -0.9 899,624 - MMJJ_RS04795 0.89 -0.6 899,625 + MMJJ_RS04795 0.90 -1.6 899,625 + MMJJ_RS04795 0.90 +0.7 899,626 - MMJJ_RS04795 0.90 +0.7 899,654 - -1.9 899,678 - -1.8 899,679 + +1.9 899,682 - -1.2 899,682 - +1.4 899,682 - -1.8 899,682 - +0.3 899,682 - -0.0 899,682 - -1.2 899,683 + -2.3 899,683 + -2.3 899,717 + -3.4 899,749 + -0.2 899,775 - -0.9 899,838 - MMJJ_RS04800 0.15 -1.2 899,838 - MMJJ_RS04800 0.15 -1.6 899,838 - MMJJ_RS04800 0.15 +0.4 899,850 + MMJJ_RS04800 0.17 +0.8 899,883 + MMJJ_RS04800 0.22 -0.6 899,963 + MMJJ_RS04800 0.34 -1.4
Or see this region's nucleotide sequence