Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04755 and MMJJ_RS04760 are separated by 28 nucleotides MMJJ_RS04760 and MMJJ_RS04765 are separated by 40 nucleotides MMJJ_RS04765 and MMJJ_RS04770 are separated by 18 nucleotides
MMJJ_RS04755: MMJJ_RS04755 - 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB, at 892,054 to 893,079
_RS04755
MMJJ_RS04760: MMJJ_RS04760 - 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC, at 893,108 to 894,640
_RS04760
MMJJ_RS04765: MMJJ_RS04765 - metal-dependent hydrolase, at 894,681 to 895,355
_RS04765
MMJJ_RS04770: MMJJ_RS04770 - formate-dependent phosphoribosylglycinamide formyltransferase, at 895,374 to 896,540
_RS04770
Position (kb) 893
894
895 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 892.112 kb on - strand at 892.112 kb on - strand at 892.125 kb on + strand at 892.152 kb on + strand at 892.155 kb on - strand at 892.156 kb on + strand at 892.181 kb on - strand, within MMJJ_RS04755 at 892.182 kb on + strand, within MMJJ_RS04755 at 892.210 kb on + strand at 892.210 kb on + strand, within MMJJ_RS04755 at 892.256 kb on - strand, within MMJJ_RS04755 at 892.256 kb on - strand, within MMJJ_RS04755 at 892.260 kb on - strand, within MMJJ_RS04755 at 892.260 kb on - strand, within MMJJ_RS04755 at 892.260 kb on - strand, within MMJJ_RS04755 at 892.260 kb on - strand, within MMJJ_RS04755 at 892.261 kb on + strand, within MMJJ_RS04755 at 892.261 kb on + strand, within MMJJ_RS04755 at 892.261 kb on + strand, within MMJJ_RS04755 at 892.264 kb on + strand, within MMJJ_RS04755 at 892.291 kb on - strand, within MMJJ_RS04755 at 892.292 kb on + strand, within MMJJ_RS04755 at 892.328 kb on + strand, within MMJJ_RS04755 at 892.331 kb on - strand, within MMJJ_RS04755 at 892.331 kb on - strand, within MMJJ_RS04755 at 892.332 kb on + strand, within MMJJ_RS04755 at 892.332 kb on + strand, within MMJJ_RS04755 at 892.445 kb on - strand, within MMJJ_RS04755 at 892.457 kb on - strand, within MMJJ_RS04755 at 892.484 kb on - strand, within MMJJ_RS04755 at 892.514 kb on - strand, within MMJJ_RS04755 at 892.546 kb on - strand, within MMJJ_RS04755 at 892.548 kb on - strand, within MMJJ_RS04755 at 892.553 kb on - strand, within MMJJ_RS04755 at 892.553 kb on - strand, within MMJJ_RS04755 at 892.553 kb on - strand at 892.557 kb on - strand, within MMJJ_RS04755 at 892.558 kb on + strand, within MMJJ_RS04755 at 892.558 kb on + strand, within MMJJ_RS04755 at 892.563 kb on + strand, within MMJJ_RS04755 at 892.637 kb on - strand, within MMJJ_RS04755 at 892.671 kb on + strand, within MMJJ_RS04755 at 892.676 kb on - strand, within MMJJ_RS04755 at 892.694 kb on - strand, within MMJJ_RS04755 at 892.699 kb on + strand, within MMJJ_RS04755 at 892.719 kb on - strand, within MMJJ_RS04755 at 892.720 kb on + strand, within MMJJ_RS04755 at 892.773 kb on + strand, within MMJJ_RS04755 at 892.790 kb on + strand, within MMJJ_RS04755 at 892.860 kb on + strand, within MMJJ_RS04755 at 892.888 kb on + strand, within MMJJ_RS04755 at 892.964 kb on - strand, within MMJJ_RS04755 at 892.992 kb on - strand at 893.036 kb on - strand at 893.037 kb on + strand at 893.037 kb on + strand at 893.045 kb on - strand at 893.073 kb on + strand at 893.077 kb on - strand at 893.077 kb on - strand at 893.078 kb on + strand at 893.087 kb on + strand at 893.096 kb on - strand at 893.142 kb on - strand at 893.401 kb on + strand, within MMJJ_RS04760 at 893.401 kb on + strand, within MMJJ_RS04760 at 893.478 kb on + strand, within MMJJ_RS04760 at 893.479 kb on - strand, within MMJJ_RS04760 at 893.482 kb on - strand, within MMJJ_RS04760 at 893.653 kb on - strand, within MMJJ_RS04760 at 893.811 kb on - strand, within MMJJ_RS04760 at 893.811 kb on - strand, within MMJJ_RS04760 at 893.811 kb on - strand, within MMJJ_RS04760 at 893.874 kb on - strand, within MMJJ_RS04760 at 893.874 kb on - strand, within MMJJ_RS04760 at 893.874 kb on - strand, within MMJJ_RS04760 at 893.875 kb on + strand, within MMJJ_RS04760 at 893.875 kb on + strand, within MMJJ_RS04760 at 893.875 kb on + strand, within MMJJ_RS04760 at 893.875 kb on + strand, within MMJJ_RS04760 at 893.875 kb on + strand, within MMJJ_RS04760 at 893.880 kb on - strand, within MMJJ_RS04760 at 893.881 kb on + strand, within MMJJ_RS04760 at 893.899 kb on - strand, within MMJJ_RS04760 at 894.037 kb on + strand, within MMJJ_RS04760 at 894.037 kb on + strand, within MMJJ_RS04760 at 894.073 kb on - strand, within MMJJ_RS04760 at 894.073 kb on - strand, within MMJJ_RS04760 at 894.073 kb on - strand, within MMJJ_RS04760 at 894.073 kb on - strand, within MMJJ_RS04760 at 894.073 kb on - strand, within MMJJ_RS04760 at 894.073 kb on - strand, within MMJJ_RS04760 at 894.074 kb on + strand, within MMJJ_RS04760 at 894.229 kb on - strand, within MMJJ_RS04760 at 894.246 kb on - strand, within MMJJ_RS04760 at 894.246 kb on - strand, within MMJJ_RS04760 at 894.246 kb on - strand, within MMJJ_RS04760 at 894.246 kb on - strand, within MMJJ_RS04760 at 894.247 kb on + strand, within MMJJ_RS04760 at 894.247 kb on + strand, within MMJJ_RS04760 at 894.247 kb on + strand, within MMJJ_RS04760 at 894.247 kb on + strand, within MMJJ_RS04760 at 894.247 kb on + strand, within MMJJ_RS04760 at 894.247 kb on + strand, within MMJJ_RS04760 at 894.247 kb on + strand, within MMJJ_RS04760 at 894.247 kb on + strand, within MMJJ_RS04760 at 894.248 kb on - strand, within MMJJ_RS04760 at 894.269 kb on - strand, within MMJJ_RS04760 at 894.270 kb on + strand, within MMJJ_RS04760 at 894.276 kb on - strand, within MMJJ_RS04760 at 894.276 kb on - strand, within MMJJ_RS04760 at 894.302 kb on + strand, within MMJJ_RS04760 at 894.305 kb on + strand, within MMJJ_RS04760 at 894.317 kb on - strand, within MMJJ_RS04760 at 894.318 kb on + strand, within MMJJ_RS04760 at 894.318 kb on + strand, within MMJJ_RS04760 at 894.329 kb on - strand, within MMJJ_RS04760 at 894.329 kb on - strand, within MMJJ_RS04760 at 894.366 kb on - strand, within MMJJ_RS04760 at 894.401 kb on - strand, within MMJJ_RS04760 at 894.401 kb on - strand, within MMJJ_RS04760 at 894.401 kb on - strand, within MMJJ_RS04760 at 894.401 kb on - strand, within MMJJ_RS04760 at 894.401 kb on - strand, within MMJJ_RS04760 at 894.402 kb on + strand, within MMJJ_RS04760 at 894.402 kb on + strand, within MMJJ_RS04760 at 894.402 kb on + strand, within MMJJ_RS04760 at 894.402 kb on + strand, within MMJJ_RS04760 at 894.404 kb on + strand, within MMJJ_RS04760 at 894.444 kb on - strand, within MMJJ_RS04760 at 894.444 kb on - strand, within MMJJ_RS04760 at 894.444 kb on - strand, within MMJJ_RS04760 at 894.445 kb on + strand, within MMJJ_RS04760 at 894.445 kb on + strand, within MMJJ_RS04760 at 894.445 kb on + strand, within MMJJ_RS04760 at 894.445 kb on + strand, within MMJJ_RS04760 at 894.445 kb on + strand, within MMJJ_RS04760 at 894.445 kb on + strand, within MMJJ_RS04760 at 894.445 kb on + strand, within MMJJ_RS04760 at 894.445 kb on + strand, within MMJJ_RS04760 at 894.446 kb on - strand, within MMJJ_RS04760 at 894.446 kb on - strand, within MMJJ_RS04760 at 894.446 kb on - strand, within MMJJ_RS04760 at 894.446 kb on - strand, within MMJJ_RS04760 at 894.447 kb on + strand, within MMJJ_RS04760 at 894.447 kb on + strand, within MMJJ_RS04760 at 894.447 kb on + strand, within MMJJ_RS04760 at 894.447 kb on + strand, within MMJJ_RS04760 at 894.447 kb on + strand, within MMJJ_RS04760 at 894.447 kb on + strand, within MMJJ_RS04760 at 894.447 kb on + strand, within MMJJ_RS04760 at 894.450 kb on - strand, within MMJJ_RS04760 at 894.450 kb on - strand, within MMJJ_RS04760 at 894.450 kb on - strand, within MMJJ_RS04760 at 894.496 kb on + strand at 894.511 kb on + strand at 894.518 kb on - strand at 894.519 kb on + strand at 894.519 kb on + strand at 894.575 kb on + strand at 894.577 kb on - strand at 894.578 kb on + strand at 894.578 kb on + strand at 894.601 kb on + strand at 894.634 kb on + strand at 894.634 kb on + strand at 894.634 kb on + strand at 894.698 kb on - strand at 894.699 kb on + strand at 894.699 kb on + strand at 894.732 kb on + strand at 894.732 kb on + strand at 894.761 kb on + strand, within MMJJ_RS04765 at 894.788 kb on + strand, within MMJJ_RS04765 at 894.799 kb on - strand, within MMJJ_RS04765 at 894.812 kb on + strand, within MMJJ_RS04765 at 894.812 kb on + strand, within MMJJ_RS04765 at 894.828 kb on - strand, within MMJJ_RS04765 at 894.828 kb on - strand, within MMJJ_RS04765 at 894.828 kb on - strand, within MMJJ_RS04765 at 894.828 kb on - strand, within MMJJ_RS04765 at 894.828 kb on - strand, within MMJJ_RS04765 at 894.828 kb on - strand, within MMJJ_RS04765 at 894.829 kb on + strand, within MMJJ_RS04765 at 894.829 kb on + strand, within MMJJ_RS04765 at 894.830 kb on - strand, within MMJJ_RS04765 at 894.830 kb on - strand, within MMJJ_RS04765 at 894.830 kb on - strand, within MMJJ_RS04765 at 894.831 kb on + strand, within MMJJ_RS04765 at 894.831 kb on + strand, within MMJJ_RS04765 at 894.846 kb on + strand, within MMJJ_RS04765 at 894.867 kb on - strand, within MMJJ_RS04765 at 894.867 kb on - strand, within MMJJ_RS04765 at 894.867 kb on - strand, within MMJJ_RS04765 at 894.867 kb on - strand, within MMJJ_RS04765 at 894.871 kb on - strand, within MMJJ_RS04765 at 894.871 kb on - strand, within MMJJ_RS04765 at 894.885 kb on - strand, within MMJJ_RS04765 at 894.935 kb on - strand, within MMJJ_RS04765 at 894.949 kb on + strand, within MMJJ_RS04765 at 894.995 kb on - strand, within MMJJ_RS04765 at 895.088 kb on - strand, within MMJJ_RS04765 at 895.089 kb on + strand, within MMJJ_RS04765 at 895.160 kb on - strand, within MMJJ_RS04765 at 895.161 kb on + strand, within MMJJ_RS04765 at 895.185 kb on - strand, within MMJJ_RS04765 at 895.190 kb on + strand, within MMJJ_RS04765 at 895.209 kb on - strand, within MMJJ_RS04765 at 895.277 kb on - strand, within MMJJ_RS04765 at 895.287 kb on + strand, within MMJJ_RS04765 at 895.599 kb on - strand, within MMJJ_RS04770
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 892,112 - -1.3 892,112 - -2.2 892,125 + -1.6 892,152 + -4.2 892,155 - -1.9 892,156 + -2.5 892,181 - MMJJ_RS04755 0.12 -1.4 892,182 + MMJJ_RS04755 0.12 -3.4 892,210 + -0.6 892,210 + MMJJ_RS04755 0.15 -3.3 892,256 - MMJJ_RS04755 0.20 -1.5 892,256 - MMJJ_RS04755 0.20 -1.2 892,260 - MMJJ_RS04755 0.20 -0.8 892,260 - MMJJ_RS04755 0.20 -2.4 892,260 - MMJJ_RS04755 0.20 -3.4 892,260 - MMJJ_RS04755 0.20 -0.9 892,261 + MMJJ_RS04755 0.20 -2.4 892,261 + MMJJ_RS04755 0.20 +2.7 892,261 + MMJJ_RS04755 0.20 -2.3 892,264 + MMJJ_RS04755 0.20 -2.7 892,291 - MMJJ_RS04755 0.23 -0.9 892,292 + MMJJ_RS04755 0.23 -0.1 892,328 + MMJJ_RS04755 0.27 -3.0 892,331 - MMJJ_RS04755 0.27 -1.8 892,331 - MMJJ_RS04755 0.27 -1.4 892,332 + MMJJ_RS04755 0.27 -2.4 892,332 + MMJJ_RS04755 0.27 -1.9 892,445 - MMJJ_RS04755 0.38 -0.5 892,457 - MMJJ_RS04755 0.39 -2.6 892,484 - MMJJ_RS04755 0.42 -2.1 892,514 - MMJJ_RS04755 0.45 -3.1 892,546 - MMJJ_RS04755 0.48 -0.2 892,548 - MMJJ_RS04755 0.48 -1.8 892,553 - MMJJ_RS04755 0.49 -2.2 892,553 - MMJJ_RS04755 0.49 -2.2 892,553 - +2.4 892,557 - MMJJ_RS04755 0.49 -2.1 892,558 + MMJJ_RS04755 0.49 +0.5 892,558 + MMJJ_RS04755 0.49 -1.7 892,563 + MMJJ_RS04755 0.50 -0.2 892,637 - MMJJ_RS04755 0.57 +1.4 892,671 + MMJJ_RS04755 0.60 -1.7 892,676 - MMJJ_RS04755 0.61 -1.7 892,694 - MMJJ_RS04755 0.62 -1.8 892,699 + MMJJ_RS04755 0.63 -1.7 892,719 - MMJJ_RS04755 0.65 -2.0 892,720 + MMJJ_RS04755 0.65 -3.1 892,773 + MMJJ_RS04755 0.70 -1.9 892,790 + MMJJ_RS04755 0.72 -3.7 892,860 + MMJJ_RS04755 0.79 -1.2 892,888 + MMJJ_RS04755 0.81 -2.2 892,964 - MMJJ_RS04755 0.89 -2.6 892,992 - -2.5 893,036 - +0.6 893,037 + -1.6 893,037 + -2.9 893,045 - -1.8 893,073 + +0.0 893,077 - +0.4 893,077 - -1.3 893,078 + -1.8 893,087 + -2.2 893,096 - -1.4 893,142 - -2.5 893,401 + MMJJ_RS04760 0.19 -2.2 893,401 + MMJJ_RS04760 0.19 -2.6 893,478 + MMJJ_RS04760 0.24 -1.4 893,479 - MMJJ_RS04760 0.24 -3.3 893,482 - MMJJ_RS04760 0.24 -2.0 893,653 - MMJJ_RS04760 0.36 -0.9 893,811 - MMJJ_RS04760 0.46 -0.6 893,811 - MMJJ_RS04760 0.46 -2.3 893,811 - MMJJ_RS04760 0.46 -2.1 893,874 - MMJJ_RS04760 0.50 -2.9 893,874 - MMJJ_RS04760 0.50 -1.7 893,874 - MMJJ_RS04760 0.50 -2.1 893,875 + MMJJ_RS04760 0.50 -1.6 893,875 + MMJJ_RS04760 0.50 -1.9 893,875 + MMJJ_RS04760 0.50 -1.6 893,875 + MMJJ_RS04760 0.50 -1.9 893,875 + MMJJ_RS04760 0.50 -0.2 893,880 - MMJJ_RS04760 0.50 -2.7 893,881 + MMJJ_RS04760 0.50 -2.3 893,899 - MMJJ_RS04760 0.52 -2.5 894,037 + MMJJ_RS04760 0.61 -1.2 894,037 + MMJJ_RS04760 0.61 -1.8 894,073 - MMJJ_RS04760 0.63 -2.0 894,073 - MMJJ_RS04760 0.63 -0.2 894,073 - MMJJ_RS04760 0.63 -2.1 894,073 - MMJJ_RS04760 0.63 -0.4 894,073 - MMJJ_RS04760 0.63 -0.2 894,073 - MMJJ_RS04760 0.63 -2.2 894,074 + MMJJ_RS04760 0.63 -3.1 894,229 - MMJJ_RS04760 0.73 -2.5 894,246 - MMJJ_RS04760 0.74 -0.6 894,246 - MMJJ_RS04760 0.74 -1.7 894,246 - MMJJ_RS04760 0.74 -3.4 894,246 - MMJJ_RS04760 0.74 -1.6 894,247 + MMJJ_RS04760 0.74 -0.4 894,247 + MMJJ_RS04760 0.74 -0.6 894,247 + MMJJ_RS04760 0.74 -2.9 894,247 + MMJJ_RS04760 0.74 -2.4 894,247 + MMJJ_RS04760 0.74 -1.7 894,247 + MMJJ_RS04760 0.74 -2.9 894,247 + MMJJ_RS04760 0.74 -2.1 894,247 + MMJJ_RS04760 0.74 -2.9 894,248 - MMJJ_RS04760 0.74 -0.6 894,269 - MMJJ_RS04760 0.76 -2.7 894,270 + MMJJ_RS04760 0.76 -1.1 894,276 - MMJJ_RS04760 0.76 -1.9 894,276 - MMJJ_RS04760 0.76 -1.8 894,302 + MMJJ_RS04760 0.78 -0.2 894,305 + MMJJ_RS04760 0.78 -2.9 894,317 - MMJJ_RS04760 0.79 +0.4 894,318 + MMJJ_RS04760 0.79 +0.4 894,318 + MMJJ_RS04760 0.79 +0.4 894,329 - MMJJ_RS04760 0.80 -2.8 894,329 - MMJJ_RS04760 0.80 -2.3 894,366 - MMJJ_RS04760 0.82 -2.3 894,401 - MMJJ_RS04760 0.84 -2.5 894,401 - MMJJ_RS04760 0.84 -0.4 894,401 - MMJJ_RS04760 0.84 -1.5 894,401 - MMJJ_RS04760 0.84 -1.4 894,401 - MMJJ_RS04760 0.84 -3.3 894,402 + MMJJ_RS04760 0.84 -2.7 894,402 + MMJJ_RS04760 0.84 -1.9 894,402 + MMJJ_RS04760 0.84 +0.4 894,402 + MMJJ_RS04760 0.84 -1.9 894,404 + MMJJ_RS04760 0.85 -0.9 894,444 - MMJJ_RS04760 0.87 -2.7 894,444 - MMJJ_RS04760 0.87 -2.3 894,444 - MMJJ_RS04760 0.87 -2.5 894,445 + MMJJ_RS04760 0.87 -1.3 894,445 + MMJJ_RS04760 0.87 -1.9 894,445 + MMJJ_RS04760 0.87 -0.2 894,445 + MMJJ_RS04760 0.87 -0.8 894,445 + MMJJ_RS04760 0.87 -1.8 894,445 + MMJJ_RS04760 0.87 -2.1 894,445 + MMJJ_RS04760 0.87 -1.8 894,445 + MMJJ_RS04760 0.87 -2.2 894,446 - MMJJ_RS04760 0.87 -2.0 894,446 - MMJJ_RS04760 0.87 -0.9 894,446 - MMJJ_RS04760 0.87 -2.0 894,446 - MMJJ_RS04760 0.87 -1.5 894,447 + MMJJ_RS04760 0.87 -0.9 894,447 + MMJJ_RS04760 0.87 -2.1 894,447 + MMJJ_RS04760 0.87 +2.8 894,447 + MMJJ_RS04760 0.87 -2.7 894,447 + MMJJ_RS04760 0.87 -2.4 894,447 + MMJJ_RS04760 0.87 -2.6 894,447 + MMJJ_RS04760 0.87 -4.2 894,450 - MMJJ_RS04760 0.88 -0.3 894,450 - MMJJ_RS04760 0.88 -1.8 894,450 - MMJJ_RS04760 0.88 -2.8 894,496 + -1.2 894,511 + -2.1 894,518 - -1.4 894,519 + -1.7 894,519 + -1.4 894,575 + -0.8 894,577 - -3.1 894,578 + -2.8 894,578 + -3.1 894,601 + +0.4 894,634 + +1.8 894,634 + -0.8 894,634 + -1.2 894,698 - -0.9 894,699 + -0.7 894,699 + -1.4 894,732 + +0.3 894,732 + -0.2 894,761 + MMJJ_RS04765 0.12 -1.6 894,788 + MMJJ_RS04765 0.16 -2.5 894,799 - MMJJ_RS04765 0.17 +0.8 894,812 + MMJJ_RS04765 0.19 +0.6 894,812 + MMJJ_RS04765 0.19 -0.2 894,828 - MMJJ_RS04765 0.22 -2.3 894,828 - MMJJ_RS04765 0.22 +1.8 894,828 - MMJJ_RS04765 0.22 -0.4 894,828 - MMJJ_RS04765 0.22 +0.4 894,828 - MMJJ_RS04765 0.22 -0.6 894,828 - MMJJ_RS04765 0.22 -2.5 894,829 + MMJJ_RS04765 0.22 +6.9 894,829 + MMJJ_RS04765 0.22 +0.5 894,830 - MMJJ_RS04765 0.22 -0.2 894,830 - MMJJ_RS04765 0.22 -3.3 894,830 - MMJJ_RS04765 0.22 -0.9 894,831 + MMJJ_RS04765 0.22 -0.6 894,831 + MMJJ_RS04765 0.22 -1.6 894,846 + MMJJ_RS04765 0.24 +2.6 894,867 - MMJJ_RS04765 0.28 +0.9 894,867 - MMJJ_RS04765 0.28 -1.2 894,867 - MMJJ_RS04765 0.28 -2.1 894,867 - MMJJ_RS04765 0.28 +0.4 894,871 - MMJJ_RS04765 0.28 -1.8 894,871 - MMJJ_RS04765 0.28 +2.3 894,885 - MMJJ_RS04765 0.30 +2.6 894,935 - MMJJ_RS04765 0.38 -0.6 894,949 + MMJJ_RS04765 0.40 -0.2 894,995 - MMJJ_RS04765 0.47 +3.8 895,088 - MMJJ_RS04765 0.60 -1.9 895,089 + MMJJ_RS04765 0.60 -0.8 895,160 - MMJJ_RS04765 0.71 -0.6 895,161 + MMJJ_RS04765 0.71 +1.8 895,185 - MMJJ_RS04765 0.75 -0.9 895,190 + MMJJ_RS04765 0.75 +1.4 895,209 - MMJJ_RS04765 0.78 +0.8 895,277 - MMJJ_RS04765 0.88 +0.8 895,287 + MMJJ_RS04765 0.90 -0.6 895,599 - MMJJ_RS04770 0.19 +1.9
Or see this region's nucleotide sequence