Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04710 and MMJJ_RS04715 are separated by 271 nucleotides MMJJ_RS04715 and MMJJ_RS04720 are separated by 49 nucleotides
MMJJ_RS04710: MMJJ_RS04710 - threonine synthase, at 882,793 to 884,007
_RS04710
MMJJ_RS04715: MMJJ_RS04715 - hypothetical protein, at 884,279 to 884,623
_RS04715
MMJJ_RS04720: MMJJ_RS04720 - IMP dehydrogenase, at 884,673 to 886,175
_RS04720
Position (kb) 884
885 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 884.062 kb on - strand at 884.063 kb on + strand at 884.089 kb on + strand at 884.089 kb on + strand at 884.091 kb on - strand at 884.151 kb on - strand at 884.157 kb on - strand at 884.177 kb on - strand at 884.177 kb on - strand at 884.182 kb on + strand at 884.182 kb on + strand at 884.184 kb on - strand at 884.184 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.190 kb on - strand at 884.218 kb on - strand at 884.218 kb on - strand at 884.218 kb on - strand at 884.218 kb on - strand at 884.218 kb on - strand at 884.222 kb on - strand at 884.222 kb on - strand at 884.222 kb on - strand at 884.222 kb on - strand at 884.239 kb on + strand at 884.280 kb on - strand at 884.287 kb on + strand at 884.300 kb on - strand at 884.300 kb on - strand at 884.300 kb on - strand at 884.300 kb on - strand at 884.303 kb on + strand at 884.325 kb on + strand, within MMJJ_RS04715 at 884.372 kb on - strand, within MMJJ_RS04715 at 884.425 kb on - strand, within MMJJ_RS04715 at 884.425 kb on - strand, within MMJJ_RS04715 at 884.425 kb on - strand, within MMJJ_RS04715 at 884.426 kb on + strand, within MMJJ_RS04715 at 884.426 kb on + strand, within MMJJ_RS04715 at 884.426 kb on + strand, within MMJJ_RS04715 at 884.481 kb on + strand, within MMJJ_RS04715 at 884.497 kb on - strand, within MMJJ_RS04715 at 884.497 kb on - strand, within MMJJ_RS04715 at 884.498 kb on + strand, within MMJJ_RS04715 at 884.498 kb on + strand, within MMJJ_RS04715 at 884.609 kb on + strand at 884.609 kb on + strand at 884.639 kb on + strand at 884.639 kb on + strand at 885.290 kb on - strand at 885.602 kb on + strand, within MMJJ_RS04720
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 884,062 - +2.7 884,063 + +1.3 884,089 + +2.4 884,089 + +0.3 884,091 - +1.5 884,151 - +0.2 884,157 - +0.5 884,177 - +0.4 884,177 - -0.8 884,182 + -4.1 884,182 + -0.9 884,184 - +0.9 884,184 - +1.0 884,188 - -2.1 884,188 - -1.2 884,188 - +0.5 884,188 - -1.0 884,189 + +0.4 884,189 + -2.0 884,189 + -1.5 884,189 + -3.8 884,189 + -1.5 884,189 + -1.5 884,189 + +0.3 884,189 + +1.3 884,189 + -1.3 884,189 + -1.6 884,189 + -2.9 884,190 - -3.1 884,218 - -0.9 884,218 - -0.9 884,218 - -0.8 884,218 - -0.6 884,218 - +0.8 884,222 - +2.6 884,222 - +3.8 884,222 - -1.1 884,222 - -0.1 884,239 + -1.1 884,280 - +1.1 884,287 + -0.6 884,300 - +1.4 884,300 - -0.2 884,300 - -1.2 884,300 - -1.7 884,303 + -1.8 884,325 + MMJJ_RS04715 0.13 +2.3 884,372 - MMJJ_RS04715 0.27 -0.5 884,425 - MMJJ_RS04715 0.42 +1.6 884,425 - MMJJ_RS04715 0.42 +0.4 884,425 - MMJJ_RS04715 0.42 +0.5 884,426 + MMJJ_RS04715 0.43 +1.8 884,426 + MMJJ_RS04715 0.43 +0.5 884,426 + MMJJ_RS04715 0.43 -1.1 884,481 + MMJJ_RS04715 0.59 -0.2 884,497 - MMJJ_RS04715 0.63 -1.4 884,497 - MMJJ_RS04715 0.63 -1.5 884,498 + MMJJ_RS04715 0.63 -1.9 884,498 + MMJJ_RS04715 0.63 +0.8 884,609 + +0.4 884,609 + +1.1 884,639 + -0.6 884,639 + +0.7 885,290 - -0.2 885,602 + MMJJ_RS04720 0.62 -0.9
Or see this region's nucleotide sequence