Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04695 and MMJJ_RS04700 are separated by 635 nucleotides MMJJ_RS04700 and MMJJ_RS04705 are separated by 56 nucleotides MMJJ_RS04705 and MMJJ_RS04710 are separated by 17 nucleotides
MMJJ_RS04695: MMJJ_RS04695 - formate dehydrogenase subunit alpha, at 878,542 to 880,572
_RS04695
MMJJ_RS04700: MMJJ_RS04700 - deoxyhypusine synthase, at 881,208 to 882,215
_RS04700
MMJJ_RS04705: MMJJ_RS04705 - 3-isopropylmalate dehydratase small subunit, at 882,272 to 882,775
_RS04705
MMJJ_RS04710: MMJJ_RS04710 - threonine synthase, at 882,793 to 884,007
_RS04710
Position (kb) 881
882
883 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 880.214 kb on + strand, within MMJJ_RS04695 at 880.241 kb on - strand, within MMJJ_RS04695 at 880.241 kb on - strand, within MMJJ_RS04695 at 880.241 kb on - strand, within MMJJ_RS04695 at 880.242 kb on + strand, within MMJJ_RS04695 at 880.282 kb on - strand, within MMJJ_RS04695 at 880.283 kb on + strand, within MMJJ_RS04695 at 880.299 kb on + strand, within MMJJ_RS04695 at 880.307 kb on + strand, within MMJJ_RS04695 at 880.321 kb on + strand, within MMJJ_RS04695 at 880.328 kb on + strand, within MMJJ_RS04695 at 880.344 kb on - strand, within MMJJ_RS04695 at 880.345 kb on + strand, within MMJJ_RS04695 at 880.422 kb on + strand at 880.425 kb on - strand at 880.426 kb on + strand at 880.433 kb on + strand at 880.434 kb on - strand at 880.483 kb on - strand at 880.484 kb on + strand at 880.486 kb on - strand at 880.487 kb on + strand at 880.500 kb on - strand at 880.505 kb on + strand at 880.560 kb on - strand at 880.573 kb on - strand at 880.597 kb on - strand at 880.641 kb on + strand at 880.687 kb on - strand at 880.711 kb on + strand at 880.711 kb on + strand at 880.773 kb on - strand at 880.875 kb on + strand at 880.887 kb on - strand at 880.974 kb on + strand at 881.024 kb on - strand at 881.073 kb on + strand at 881.123 kb on + strand at 881.144 kb on + strand at 881.192 kb on - strand at 881.193 kb on + strand at 881.210 kb on + strand at 881.213 kb on - strand at 881.360 kb on - strand, within MMJJ_RS04700 at 881.360 kb on - strand, within MMJJ_RS04700 at 881.361 kb on + strand, within MMJJ_RS04700 at 881.361 kb on + strand, within MMJJ_RS04700 at 881.365 kb on - strand, within MMJJ_RS04700 at 881.406 kb on - strand, within MMJJ_RS04700 at 881.410 kb on + strand at 881.508 kb on - strand, within MMJJ_RS04700 at 881.611 kb on - strand, within MMJJ_RS04700 at 881.758 kb on - strand, within MMJJ_RS04700 at 881.758 kb on - strand, within MMJJ_RS04700 at 881.759 kb on + strand, within MMJJ_RS04700 at 881.759 kb on + strand, within MMJJ_RS04700 at 881.795 kb on + strand, within MMJJ_RS04700 at 881.795 kb on + strand, within MMJJ_RS04700 at 881.797 kb on + strand, within MMJJ_RS04700 at 881.912 kb on - strand, within MMJJ_RS04700 at 881.944 kb on + strand, within MMJJ_RS04700 at 881.955 kb on - strand, within MMJJ_RS04700 at 881.996 kb on + strand, within MMJJ_RS04700 at 882.273 kb on - strand at 882.710 kb on - strand, within MMJJ_RS04705
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 880,214 + MMJJ_RS04695 0.82 -1.2 880,241 - MMJJ_RS04695 0.84 +2.1 880,241 - MMJJ_RS04695 0.84 +4.5 880,241 - MMJJ_RS04695 0.84 +2.2 880,242 + MMJJ_RS04695 0.84 -0.6 880,282 - MMJJ_RS04695 0.86 +3.2 880,283 + MMJJ_RS04695 0.86 -1.4 880,299 + MMJJ_RS04695 0.87 -3.3 880,307 + MMJJ_RS04695 0.87 -2.0 880,321 + MMJJ_RS04695 0.88 -0.9 880,328 + MMJJ_RS04695 0.88 +2.7 880,344 - MMJJ_RS04695 0.89 -3.1 880,345 + MMJJ_RS04695 0.89 +0.0 880,422 + -0.2 880,425 - +0.4 880,426 + -0.2 880,433 + -1.8 880,434 - +3.4 880,483 - +1.3 880,484 + -2.2 880,486 - +3.8 880,487 + -1.3 880,500 - +1.1 880,505 + +2.7 880,560 - -2.0 880,573 - +0.8 880,597 - -3.8 880,641 + -2.2 880,687 - -0.0 880,711 + +1.8 880,711 + -1.8 880,773 - -2.3 880,875 + -0.3 880,887 - +1.0 880,974 + +1.4 881,024 - -1.4 881,073 + -0.9 881,123 + +0.0 881,144 + -1.4 881,192 - +2.6 881,193 + -0.6 881,210 + -0.2 881,213 - -0.5 881,360 - MMJJ_RS04700 0.15 -0.9 881,360 - MMJJ_RS04700 0.15 -0.9 881,361 + MMJJ_RS04700 0.15 -1.6 881,361 + MMJJ_RS04700 0.15 -0.6 881,365 - MMJJ_RS04700 0.16 -2.5 881,406 - MMJJ_RS04700 0.20 +1.0 881,410 + +0.4 881,508 - MMJJ_RS04700 0.30 -2.3 881,611 - MMJJ_RS04700 0.40 +0.1 881,758 - MMJJ_RS04700 0.55 -1.2 881,758 - MMJJ_RS04700 0.55 +0.2 881,759 + MMJJ_RS04700 0.55 -0.2 881,759 + MMJJ_RS04700 0.55 -1.2 881,795 + MMJJ_RS04700 0.58 +0.4 881,795 + MMJJ_RS04700 0.58 -1.2 881,797 + MMJJ_RS04700 0.58 -0.2 881,912 - MMJJ_RS04700 0.70 -2.2 881,944 + MMJJ_RS04700 0.73 -0.2 881,955 - MMJJ_RS04700 0.74 -0.9 881,996 + MMJJ_RS04700 0.78 -0.2 882,273 - -0.2 882,710 - MMJJ_RS04705 0.87 -1.4
Or see this region's nucleotide sequence