Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04685

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04675 and MMJJ_RS04680 are separated by 29 nucleotidesMMJJ_RS04680 and MMJJ_RS04685 are separated by 44 nucleotidesMMJJ_RS04685 and MMJJ_RS04690 are separated by 49 nucleotides MMJJ_RS04675: MMJJ_RS04675 - thiamine pyrophosphate-binding protein, at 872,574 to 874,079 _RS04675 MMJJ_RS04680: MMJJ_RS04680 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 874,109 to 874,981 _RS04680 MMJJ_RS04685: MMJJ_RS04685 - carbamoyltransferase HypF, at 875,026 to 877,341 _RS04685 MMJJ_RS04690: MMJJ_RS04690 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 877,391 to 878,518 _RS04690 Position (kb) 875 876 877 878Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 874.057 kb on - strandat 874.090 kb on - strandat 874.091 kb on + strandat 874.231 kb on - strand, within MMJJ_RS04680at 874.232 kb on + strand, within MMJJ_RS04680at 874.329 kb on + strand, within MMJJ_RS04680at 874.332 kb on - strand, within MMJJ_RS04680at 874.333 kb on + strand, within MMJJ_RS04680at 874.366 kb on - strand, within MMJJ_RS04680at 874.366 kb on - strand, within MMJJ_RS04680at 874.367 kb on + strand, within MMJJ_RS04680at 874.388 kb on - strand, within MMJJ_RS04680at 874.420 kb on + strand, within MMJJ_RS04680at 874.468 kb on - strand, within MMJJ_RS04680at 874.469 kb on + strand, within MMJJ_RS04680at 874.498 kb on - strand, within MMJJ_RS04680at 874.499 kb on + strand, within MMJJ_RS04680at 874.504 kb on - strand, within MMJJ_RS04680at 874.505 kb on + strand, within MMJJ_RS04680at 874.505 kb on + strand, within MMJJ_RS04680at 874.519 kb on + strand, within MMJJ_RS04680at 874.572 kb on + strand, within MMJJ_RS04680at 874.589 kb on - strand, within MMJJ_RS04680at 874.590 kb on + strand, within MMJJ_RS04680at 874.624 kb on - strand, within MMJJ_RS04680at 874.690 kb on - strand, within MMJJ_RS04680at 874.690 kb on - strand, within MMJJ_RS04680at 874.720 kb on + strand, within MMJJ_RS04680at 874.758 kb on + strand, within MMJJ_RS04680at 874.758 kb on + strand, within MMJJ_RS04680at 874.762 kb on - strand, within MMJJ_RS04680at 874.763 kb on + strand, within MMJJ_RS04680at 874.766 kb on - strand, within MMJJ_RS04680at 874.766 kb on - strandat 874.767 kb on + strand, within MMJJ_RS04680at 874.767 kb on + strand, within MMJJ_RS04680at 874.767 kb on + strand, within MMJJ_RS04680at 874.779 kb on - strand, within MMJJ_RS04680at 874.793 kb on + strand, within MMJJ_RS04680at 874.796 kb on - strand, within MMJJ_RS04680at 874.797 kb on + strand, within MMJJ_RS04680at 874.797 kb on + strand, within MMJJ_RS04680at 874.816 kb on - strand, within MMJJ_RS04680at 874.827 kb on + strand, within MMJJ_RS04680at 874.867 kb on - strand, within MMJJ_RS04680at 874.893 kb on - strand, within MMJJ_RS04680at 874.900 kb on - strandat 874.956 kb on + strandat 874.985 kb on + strandat 874.985 kb on + strandat 874.997 kb on - strandat 875.001 kb on - strandat 875.002 kb on + strandat 875.534 kb on + strand, within MMJJ_RS04685at 875.535 kb on - strand, within MMJJ_RS04685at 875.535 kb on - strand, within MMJJ_RS04685at 875.551 kb on + strand, within MMJJ_RS04685at 875.630 kb on - strand, within MMJJ_RS04685at 875.631 kb on + strand, within MMJJ_RS04685at 875.634 kb on - strand, within MMJJ_RS04685at 875.642 kb on - strand, within MMJJ_RS04685at 875.643 kb on + strand, within MMJJ_RS04685at 875.682 kb on + strand, within MMJJ_RS04685at 875.816 kb on - strand, within MMJJ_RS04685at 875.854 kb on + strand, within MMJJ_RS04685at 876.012 kb on + strand, within MMJJ_RS04685at 876.127 kb on + strand, within MMJJ_RS04685at 876.216 kb on + strandat 876.322 kb on - strand, within MMJJ_RS04685at 876.343 kb on - strand, within MMJJ_RS04685at 876.400 kb on + strandat 876.400 kb on + strand, within MMJJ_RS04685at 876.420 kb on + strand, within MMJJ_RS04685at 876.527 kb on + strand, within MMJJ_RS04685at 876.610 kb on + strand, within MMJJ_RS04685at 876.626 kb on - strand, within MMJJ_RS04685at 876.710 kb on + strandat 876.781 kb on + strand, within MMJJ_RS04685at 876.784 kb on - strand, within MMJJ_RS04685at 876.784 kb on - strandat 876.809 kb on - strand, within MMJJ_RS04685at 876.810 kb on + strand, within MMJJ_RS04685at 876.852 kb on - strand, within MMJJ_RS04685at 876.853 kb on + strandat 876.916 kb on - strand, within MMJJ_RS04685at 876.974 kb on - strand, within MMJJ_RS04685at 877.026 kb on + strand, within MMJJ_RS04685at 877.028 kb on - strandat 877.028 kb on - strand, within MMJJ_RS04685at 877.028 kb on - strand, within MMJJ_RS04685at 877.029 kb on + strand, within MMJJ_RS04685at 877.029 kb on + strand, within MMJJ_RS04685at 877.167 kb on - strandat 877.185 kb on - strandat 877.211 kb on - strandat 877.212 kb on + strandat 877.336 kb on + strandat 877.370 kb on + strandat 877.376 kb on - strandat 877.377 kb on + strandat 877.382 kb on - strandat 877.382 kb on - strandat 877.382 kb on - strandat 877.383 kb on + strandat 877.386 kb on - strandat 877.386 kb on - strandat 877.387 kb on + strandat 877.387 kb on + strandat 877.389 kb on - strandat 877.393 kb on + strandat 877.393 kb on + strandat 877.393 kb on + strandat 877.396 kb on - strandat 877.397 kb on + strandat 877.397 kb on + strandat 877.398 kb on - strandat 877.411 kb on - strandat 877.412 kb on + strandat 877.412 kb on + strandat 877.441 kb on - strandat 877.474 kb on + strandat 877.474 kb on + strandat 877.476 kb on + strandat 877.505 kb on - strand, within MMJJ_RS04690at 877.505 kb on - strand, within MMJJ_RS04690at 877.505 kb on - strand, within MMJJ_RS04690at 877.506 kb on + strand, within MMJJ_RS04690at 877.506 kb on + strand, within MMJJ_RS04690at 877.506 kb on + strand, within MMJJ_RS04690at 877.529 kb on - strand, within MMJJ_RS04690at 877.530 kb on + strand, within MMJJ_RS04690at 877.532 kb on + strand, within MMJJ_RS04690at 877.590 kb on + strand, within MMJJ_RS04690at 877.590 kb on + strand, within MMJJ_RS04690at 877.590 kb on + strand, within MMJJ_RS04690at 877.608 kb on - strand, within MMJJ_RS04690at 877.608 kb on - strand, within MMJJ_RS04690at 877.619 kb on - strand, within MMJJ_RS04690at 877.620 kb on + strand, within MMJJ_RS04690at 877.620 kb on + strand, within MMJJ_RS04690at 877.643 kb on - strand, within MMJJ_RS04690at 877.643 kb on - strand, within MMJJ_RS04690at 877.644 kb on + strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.652 kb on - strand, within MMJJ_RS04690at 877.653 kb on + strand, within MMJJ_RS04690at 877.653 kb on + strand, within MMJJ_RS04690at 877.661 kb on + strand, within MMJJ_RS04690at 877.661 kb on + strand, within MMJJ_RS04690at 877.661 kb on + strand, within MMJJ_RS04690at 877.763 kb on + strand, within MMJJ_RS04690at 877.763 kb on + strand, within MMJJ_RS04690at 877.827 kb on + strand, within MMJJ_RS04690at 877.827 kb on + strand, within MMJJ_RS04690at 877.856 kb on - strand, within MMJJ_RS04690at 878.040 kb on + strand, within MMJJ_RS04690at 878.049 kb on + strand, within MMJJ_RS04690at 878.081 kb on - strand, within MMJJ_RS04690at 878.081 kb on - strand, within MMJJ_RS04690at 878.081 kb on - strand, within MMJJ_RS04690at 878.096 kb on - strand, within MMJJ_RS04690at 878.097 kb on + strand, within MMJJ_RS04690at 878.104 kb on + strand, within MMJJ_RS04690at 878.171 kb on + strand, within MMJJ_RS04690at 878.171 kb on + strand, within MMJJ_RS04690at 878.171 kb on + strand, within MMJJ_RS04690at 878.174 kb on - strand, within MMJJ_RS04690at 878.174 kb on - strand, within MMJJ_RS04690at 878.175 kb on + strand, within MMJJ_RS04690at 878.175 kb on + strand, within MMJJ_RS04690at 878.180 kb on + strand, within MMJJ_RS04690at 878.214 kb on + strand, within MMJJ_RS04690at 878.216 kb on - strand, within MMJJ_RS04690at 878.246 kb on - strand, within MMJJ_RS04690at 878.246 kb on - strand, within MMJJ_RS04690at 878.279 kb on - strand, within MMJJ_RS04690

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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874,057 - +0.1
874,090 - -1.8
874,091 + +0.0
874,231 - MMJJ_RS04680 0.14 -0.2
874,232 + MMJJ_RS04680 0.14 +2.6
874,329 + MMJJ_RS04680 0.25 +0.4
874,332 - MMJJ_RS04680 0.26 +0.4
874,333 + MMJJ_RS04680 0.26 -0.9
874,366 - MMJJ_RS04680 0.29 -2.3
874,366 - MMJJ_RS04680 0.29 -1.2
874,367 + MMJJ_RS04680 0.30 +0.7
874,388 - MMJJ_RS04680 0.32 -1.0
874,420 + MMJJ_RS04680 0.36 -0.2
874,468 - MMJJ_RS04680 0.41 -2.9
874,469 + MMJJ_RS04680 0.41 -0.8
874,498 - MMJJ_RS04680 0.45 -0.8
874,499 + MMJJ_RS04680 0.45 -0.2
874,504 - MMJJ_RS04680 0.45 +0.6
874,505 + MMJJ_RS04680 0.45 -1.4
874,505 + MMJJ_RS04680 0.45 -0.1
874,519 + MMJJ_RS04680 0.47 +2.7
874,572 + MMJJ_RS04680 0.53 -2.3
874,589 - MMJJ_RS04680 0.55 -1.2
874,590 + MMJJ_RS04680 0.55 +1.2
874,624 - MMJJ_RS04680 0.59 -0.9
874,690 - MMJJ_RS04680 0.67 -0.8
874,690 - MMJJ_RS04680 0.67 -0.2
874,720 + MMJJ_RS04680 0.70 +0.4
874,758 + MMJJ_RS04680 0.74 -0.6
874,758 + MMJJ_RS04680 0.74 -1.4
874,762 - MMJJ_RS04680 0.75 -0.2
874,763 + MMJJ_RS04680 0.75 +0.4
874,766 - MMJJ_RS04680 0.75 -1.8
874,766 - +0.4
874,767 + MMJJ_RS04680 0.75 -0.9
874,767 + MMJJ_RS04680 0.75 +1.0
874,767 + MMJJ_RS04680 0.75 -0.6
874,779 - MMJJ_RS04680 0.77 -0.2
874,793 + MMJJ_RS04680 0.78 -0.9
874,796 - MMJJ_RS04680 0.79 -0.2
874,797 + MMJJ_RS04680 0.79 -2.7
874,797 + MMJJ_RS04680 0.79 -2.3
874,816 - MMJJ_RS04680 0.81 +2.1
874,827 + MMJJ_RS04680 0.82 -2.5
874,867 - MMJJ_RS04680 0.87 -1.2
874,893 - MMJJ_RS04680 0.90 +2.8
874,900 - +0.2
874,956 + -1.4
874,985 + +1.9
874,985 + +0.1
874,997 - -0.6
875,001 - +2.6
875,002 + -0.9
875,534 + MMJJ_RS04685 0.22 -1.8
875,535 - MMJJ_RS04685 0.22 -2.4
875,535 - MMJJ_RS04685 0.22 -1.8
875,551 + MMJJ_RS04685 0.23 +0.4
875,630 - MMJJ_RS04685 0.26 -0.9
875,631 + MMJJ_RS04685 0.26 +0.4
875,634 - MMJJ_RS04685 0.26 -0.6
875,642 - MMJJ_RS04685 0.27 -1.4
875,643 + MMJJ_RS04685 0.27 -0.6
875,682 + MMJJ_RS04685 0.28 -0.6
875,816 - MMJJ_RS04685 0.34 -1.8
875,854 + MMJJ_RS04685 0.36 -1.2
876,012 + MMJJ_RS04685 0.43 +0.4
876,127 + MMJJ_RS04685 0.48 -0.6
876,216 + -0.2
876,322 - MMJJ_RS04685 0.56 -0.2
876,343 - MMJJ_RS04685 0.57 -2.3
876,400 + +1.4
876,400 + MMJJ_RS04685 0.59 -0.2
876,420 + MMJJ_RS04685 0.60 -0.9
876,527 + MMJJ_RS04685 0.65 -0.6
876,610 + MMJJ_RS04685 0.68 +1.4
876,626 - MMJJ_RS04685 0.69 -0.4
876,710 + +0.4
876,781 + MMJJ_RS04685 0.76 +1.4
876,784 - MMJJ_RS04685 0.76 -1.4
876,784 - -1.2
876,809 - MMJJ_RS04685 0.77 -2.1
876,810 + MMJJ_RS04685 0.77 +0.6
876,852 - MMJJ_RS04685 0.79 +1.4
876,853 + -0.2
876,916 - MMJJ_RS04685 0.82 +1.4
876,974 - MMJJ_RS04685 0.84 -1.4
877,026 + MMJJ_RS04685 0.86 -0.2
877,028 - +0.4
877,028 - MMJJ_RS04685 0.86 +0.1
877,028 - MMJJ_RS04685 0.86 -0.6
877,029 + MMJJ_RS04685 0.86 -1.9
877,029 + MMJJ_RS04685 0.86 -0.6
877,167 - -0.2
877,185 - +1.4
877,211 - -0.9
877,212 + -0.2
877,336 + +0.8
877,370 + +1.1
877,376 - -2.3
877,377 + -1.2
877,382 - -3.7
877,382 - -0.5
877,382 - -0.9
877,383 + +3.2
877,386 - -0.8
877,386 - -2.2
877,387 + +2.2
877,387 + -3.9
877,389 - +0.9
877,393 + -0.1
877,393 + -0.9
877,393 + +0.1
877,396 - +2.4
877,397 + -1.2
877,397 + +2.2
877,398 - -2.1
877,411 - +1.9
877,412 + +2.4
877,412 + +1.1
877,441 - +0.9
877,474 + +1.6
877,474 + -3.1
877,476 + +4.1
877,505 - MMJJ_RS04690 0.10 +0.3
877,505 - MMJJ_RS04690 0.10 +2.1
877,505 - MMJJ_RS04690 0.10 -0.4
877,506 + MMJJ_RS04690 0.10 +1.5
877,506 + MMJJ_RS04690 0.10 +0.9
877,506 + MMJJ_RS04690 0.10 +2.5
877,529 - MMJJ_RS04690 0.12 +2.7
877,530 + MMJJ_RS04690 0.12 +2.3
877,532 + MMJJ_RS04690 0.12 +3.0
877,590 + MMJJ_RS04690 0.18 -0.4
877,590 + MMJJ_RS04690 0.18 +0.6
877,590 + MMJJ_RS04690 0.18 +4.4
877,608 - MMJJ_RS04690 0.19 +1.0
877,608 - MMJJ_RS04690 0.19 -2.0
877,619 - MMJJ_RS04690 0.20 -0.9
877,620 + MMJJ_RS04690 0.20 +2.7
877,620 + MMJJ_RS04690 0.20 -1.2
877,643 - MMJJ_RS04690 0.22 +1.9
877,643 - MMJJ_RS04690 0.22 +4.2
877,644 + MMJJ_RS04690 0.22 +0.8
877,652 - MMJJ_RS04690 0.23 -0.4
877,652 - MMJJ_RS04690 0.23 -1.3
877,652 - MMJJ_RS04690 0.23 +1.0
877,652 - MMJJ_RS04690 0.23 +0.4
877,652 - MMJJ_RS04690 0.23 +0.4
877,652 - MMJJ_RS04690 0.23 -1.3
877,653 + MMJJ_RS04690 0.23 -0.8
877,653 + MMJJ_RS04690 0.23 -2.6
877,661 + MMJJ_RS04690 0.24 -2.6
877,661 + MMJJ_RS04690 0.24 +2.8
877,661 + MMJJ_RS04690 0.24 -1.1
877,763 + MMJJ_RS04690 0.33 -0.3
877,763 + MMJJ_RS04690 0.33 -2.9
877,827 + MMJJ_RS04690 0.39 +1.3
877,827 + MMJJ_RS04690 0.39 -2.4
877,856 - MMJJ_RS04690 0.41 -0.2
878,040 + MMJJ_RS04690 0.58 +2.9
878,049 + MMJJ_RS04690 0.58 -0.5
878,081 - MMJJ_RS04690 0.61 -0.6
878,081 - MMJJ_RS04690 0.61 -0.2
878,081 - MMJJ_RS04690 0.61 +2.6
878,096 - MMJJ_RS04690 0.62 -1.5
878,097 + MMJJ_RS04690 0.63 +1.3
878,104 + MMJJ_RS04690 0.63 +0.6
878,171 + MMJJ_RS04690 0.69 -1.5
878,171 + MMJJ_RS04690 0.69 -0.2
878,171 + MMJJ_RS04690 0.69 -0.2
878,174 - MMJJ_RS04690 0.69 +3.1
878,174 - MMJJ_RS04690 0.69 +0.2
878,175 + MMJJ_RS04690 0.70 +1.1
878,175 + MMJJ_RS04690 0.70 +0.7
878,180 + MMJJ_RS04690 0.70 -1.0
878,214 + MMJJ_RS04690 0.73 +3.0
878,216 - MMJJ_RS04690 0.73 +3.4
878,246 - MMJJ_RS04690 0.76 +3.1
878,246 - MMJJ_RS04690 0.76 +0.1
878,279 - MMJJ_RS04690 0.79 +1.0

Or see this region's nucleotide sequence