Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04615

Experiment: McCas_formate_complete Antimycin A 0.01 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Antimycin A 0.01 mM
858,136	+				+0.2
858,260	-				-0.6
858,276	+				-0.9
858,299	-				-1.4
858,300	+				-0.2
858,303	+				+3.1
858,304	-				+2.7
858,305	+				+1.8
858,362	+				-2.0
858,415	-		MMJJ_RS04610	0.14	+0.3
858,593	-		MMJJ_RS04610	0.60	+1.9
858,602	-		MMJJ_RS04610	0.62	-1.6
858,603	+		MMJJ_RS04610	0.62	-2.3
858,610	+		MMJJ_RS04610	0.64	+2.0
858,631	+		MMJJ_RS04610	0.70	+1.3
858,631	+		MMJJ_RS04610	0.70	-2.0
858,696	-		MMJJ_RS04610	0.87	+1.5
858,697	+		MMJJ_RS04610	0.87	-0.9
858,697	+		MMJJ_RS04610	0.87	-1.6
858,700	+		MMJJ_RS04610	0.88	+2.9
858,707	-		MMJJ_RS04610	0.90	-0.4
858,720	-				+1.6
858,726	-				+4.4
858,746	-				+0.6
858,762	-				+1.4
858,763	+				-3.5
858,766	-				+0.7
858,766	-				-3.2
858,766	-				-0.2
858,766	-				-0.8
858,766	-				-0.1
858,766	-				+2.1
858,766	-				-2.6
858,766	-				-2.4
858,766	-				-0.1
858,766	-				-0.8
858,766	-				-3.5
858,766	-				+0.6
858,766	-				+0.4
858,766	-				+3.1
858,766	-				-1.9
858,767	+				-2.1
858,767	+				-2.2
858,767	+				-0.9
858,767	+				-0.1
858,767	+				-2.0
858,767	+				+2.5
858,767	+				-1.4
858,767	+				-0.2
858,767	+				-1.2
858,767	+				+0.1
858,767	+				+0.6
858,767	+				+1.1
858,767	+				+2.6
858,772	-				+1.4
858,773	+				+2.9
858,773	+				+2.1
858,774	-				-2.3
858,775	+				-2.0
858,775	+				-3.0
858,783	+				-1.2
858,793	+				-3.5
858,793	+				-3.9
858,805	+				+2.3
858,827	+				-1.1
858,827	+				+1.0
858,833	-				-0.9
858,838	-				-1.4
858,838	-				-1.8
858,839	+				-0.9
858,855	-				-0.9
858,856	+				+2.5
858,860	+				+2.1
858,860	+				+1.4
858,864	-				+0.3
858,869	-				+1.3
858,869	-				+2.8
858,869	-				-1.9
858,870	+				+0.5
858,870	+				-0.7
858,871	-				-0.3
858,871	-				-1.2
858,871	-				+0.7
858,871	-				-1.6
858,871	-				-1.5
858,871	-				+1.6
858,871	-				+2.0
858,871	-				-1.0
858,871	-				+2.2
858,871	-				+0.0
858,871	-				+0.7
858,872	+				+0.7
858,872	+				-3.2
858,872	+				-2.0
858,872	+				+3.2
858,872	+				+0.4
858,872	+				-0.1
858,872	+				-2.0
858,872	+				+4.1
858,872	+				+0.7
858,872	+				-0.6
858,873	-				+2.7
858,873	-				+4.3
858,873	-				-0.5
858,873	-				-2.1
858,873	-				-2.0
858,873	-				+0.2
858,873	-				+1.4
858,873	-				+1.0
858,873	-				-1.9
858,873	-				-0.8
858,873	-				-0.2
858,874	+				-0.5
858,874	+				+4.9
858,874	+				+1.1
858,874	+				+0.9
858,875	-				+1.1
858,875	-				-1.3
858,875	-				-1.4
858,875	-				+1.4
858,875	-				-1.8
858,876	+				+1.1
858,876	+				+1.2
858,876	+				+1.4
858,876	+				+1.6
858,880	-				+0.3
858,880	-				-0.0
858,881	+				+0.4
858,881	+				+2.2
858,881	+				+0.1
858,881	+				-1.9
858,886	-				+0.5
858,887	+				+1.1
858,894	-				-2.0
858,894	-				-1.9
858,894	-				-0.8
858,895	+				+0.4
858,895	+				+0.9
858,895	+				+0.7
858,895	+				-1.2
858,897	-				+1.0
858,898	+				+1.9
858,898	+				+0.1
858,898	+				-2.9
858,898	+				+0.4
858,898	+				-0.2
858,903	-				+1.1
858,904	+				-0.2
858,904	+				+1.6
858,907	-				+2.6
858,907	-				-0.9
858,908	+				-0.6
858,908	+				+1.7
858,911	-				+0.4
858,911	-				-1.2
858,912	+				+3.5
858,913	-				+0.1
858,914	+				+2.6
858,914	+				+0.5
858,918	+				-0.6
858,918	+				+0.8
858,919	-				+0.1
858,919	-				-3.8
858,955	-				+0.5
858,955	-				-1.9
858,956	+				-1.6
858,991	+				+1.4
859,036	+				+1.4
859,074	-				-0.2
859,074	-				-0.2
859,099	+				-0.2
859,477	+		MMJJ_RS04615	0.33	-0.2
859,784	-		MMJJ_RS04615	0.53	-0.2
859,789	+		MMJJ_RS04615	0.54	-0.2
859,789	+		MMJJ_RS04615	0.54	-1.2
859,789	+		MMJJ_RS04615	0.54	+1.4
859,789	+		MMJJ_RS04615	0.54	-1.2
860,030	-		MMJJ_RS04615	0.70	-1.5
860,065	-		MMJJ_RS04615	0.72	+0.1
860,129	+		MMJJ_RS04615	0.76	-0.2
860,138	-				-0.2
860,185	+		MMJJ_RS04615	0.80	-0.2
860,212	+		MMJJ_RS04615	0.82	-0.6
860,461	+				+0.4
860,462	-				+1.4
860,462	-				-0.6
860,463	+				+3.2
860,463	+				-0.6
860,466	-				+0.4
860,467	+				-0.6
860,467	+				-1.4
860,467	+				+2.9
860,467	+				-1.2
860,467	+				+1.4
860,467	+				-0.6
860,467	+				-1.1
860,514	-				+0.4
860,515	+				+1.4
860,519	-				+0.4
860,521	-				-2.2
860,521	-				+0.4
860,603	-				-1.2
860,856	+		MMJJ_RS04620	0.27	+1.4
860,897	+		MMJJ_RS04620	0.31	+1.4
860,901	+		MMJJ_RS04620	0.31	+1.7
861,074	-		MMJJ_RS04620	0.46	-0.6
861,112	-				+1.4
861,113	+				+0.4
861,124	-		MMJJ_RS04620	0.50	+1.4