Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04585 and MMJJ_RS04590 are separated by 71 nucleotides MMJJ_RS04590 and MMJJ_RS04595 are separated by 16 nucleotides MMJJ_RS04595 and MMJJ_RS04600 are separated by 0 nucleotides MMJJ_RS04600 and MMJJ_RS04605 are separated by 25 nucleotides
MMJJ_RS04585: MMJJ_RS04585 - phenylacetate--CoA ligase, at 855,178 to 856,479
_RS04585
MMJJ_RS04590: MMJJ_RS04590 - 50S ribosomal protein L39e, at 856,551 to 856,706
_RS04590
MMJJ_RS04595: MMJJ_RS04595 - hypothetical protein, at 856,723 to 857,322
_RS04595
MMJJ_RS04600: MMJJ_RS04600 - DNA-binding protein, at 857,323 to 857,682
_RS04600
MMJJ_RS04605: MMJJ_RS04605 - 30S ribosomal protein S19e, at 857,708 to 858,133
_RS04605
Position (kb) 856
857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 855.794 kb on - strand, within MMJJ_RS04585 at 855.893 kb on - strand, within MMJJ_RS04585 at 855.943 kb on + strand, within MMJJ_RS04585 at 856.025 kb on - strand, within MMJJ_RS04585 at 856.025 kb on - strand, within MMJJ_RS04585 at 856.029 kb on - strand, within MMJJ_RS04585 at 856.038 kb on - strand, within MMJJ_RS04585 at 856.038 kb on - strand, within MMJJ_RS04585 at 856.039 kb on + strand, within MMJJ_RS04585 at 856.039 kb on + strand, within MMJJ_RS04585 at 856.062 kb on - strand, within MMJJ_RS04585 at 856.275 kb on + strand, within MMJJ_RS04585 at 856.294 kb on + strand, within MMJJ_RS04585 at 856.296 kb on + strand, within MMJJ_RS04585 at 856.365 kb on - strand at 856.366 kb on + strand at 856.406 kb on - strand at 856.417 kb on + strand at 856.417 kb on + strand at 856.441 kb on + strand at 856.478 kb on + strand at 856.491 kb on + strand at 856.725 kb on + strand at 856.769 kb on - strand at 856.769 kb on - strand at 856.882 kb on - strand, within MMJJ_RS04595 at 856.882 kb on - strand, within MMJJ_RS04595 at 857.018 kb on + strand, within MMJJ_RS04595 at 857.024 kb on - strand, within MMJJ_RS04595 at 857.060 kb on + strand, within MMJJ_RS04595 at 857.122 kb on - strand, within MMJJ_RS04595 at 857.222 kb on + strand, within MMJJ_RS04595 at 857.274 kb on - strand at 857.275 kb on + strand at 857.450 kb on + strand, within MMJJ_RS04600 at 857.665 kb on - strand at 857.709 kb on - strand at 857.709 kb on - strand at 857.710 kb on + strand at 857.710 kb on + strand at 857.729 kb on - strand at 857.729 kb on - strand at 858.136 kb on + strand at 858.260 kb on - strand at 858.276 kb on + strand at 858.299 kb on - strand at 858.300 kb on + strand at 858.303 kb on + strand at 858.304 kb on - strand at 858.305 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 855,794 - MMJJ_RS04585 0.47 -1.4 855,893 - MMJJ_RS04585 0.55 +2.5 855,943 + MMJJ_RS04585 0.59 +0.3 856,025 - MMJJ_RS04585 0.65 -2.7 856,025 - MMJJ_RS04585 0.65 -0.9 856,029 - MMJJ_RS04585 0.65 -2.6 856,038 - MMJJ_RS04585 0.66 +1.3 856,038 - MMJJ_RS04585 0.66 -3.2 856,039 + MMJJ_RS04585 0.66 +0.8 856,039 + MMJJ_RS04585 0.66 -2.8 856,062 - MMJJ_RS04585 0.68 -0.2 856,275 + MMJJ_RS04585 0.84 -3.4 856,294 + MMJJ_RS04585 0.86 +0.5 856,296 + MMJJ_RS04585 0.86 +2.3 856,365 - +1.6 856,366 + -1.5 856,406 - -1.7 856,417 + +2.3 856,417 + +3.1 856,441 + -0.9 856,478 + +0.1 856,491 + +0.1 856,725 + -1.5 856,769 - -0.2 856,769 - -2.5 856,882 - MMJJ_RS04595 0.27 -1.6 856,882 - MMJJ_RS04595 0.27 -2.2 857,018 + MMJJ_RS04595 0.49 +0.3 857,024 - MMJJ_RS04595 0.50 -3.2 857,060 + MMJJ_RS04595 0.56 -1.2 857,122 - MMJJ_RS04595 0.67 -2.5 857,222 + MMJJ_RS04595 0.83 -2.4 857,274 - -2.6 857,275 + -0.6 857,450 + MMJJ_RS04600 0.35 -2.2 857,665 - -1.1 857,709 - -0.8 857,709 - -0.9 857,710 + -1.5 857,710 + -2.2 857,729 - -1.5 857,729 - +1.4 858,136 + +0.2 858,260 - -0.6 858,276 + -0.9 858,299 - -1.4 858,300 + -0.2 858,303 + +3.1 858,304 - +2.7 858,305 + +1.8
Or see this region's nucleotide sequence