Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04570 and MMJJ_RS04575 are separated by 60 nucleotides MMJJ_RS04575 and MMJJ_RS04580 are separated by 18 nucleotides MMJJ_RS04580 and MMJJ_RS04585 are separated by 151 nucleotides
MMJJ_RS04570: MMJJ_RS04570 - TRC40/GET3/ArsA family transport-energizing ATPase, at 852,519 to 853,556
_RS04570
MMJJ_RS04575: MMJJ_RS04575 - DUF116 domain-containing protein, at 853,617 to 854,261
_RS04575
MMJJ_RS04580: MMJJ_RS04580 - 2-phosphosulfolactate phosphatase, at 854,280 to 855,026
_RS04580
MMJJ_RS04585: MMJJ_RS04585 - phenylacetate--CoA ligase, at 855,178 to 856,479
_RS04585
Position (kb) 853
854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 853.588 kb on + strand at 853.647 kb on - strand at 853.794 kb on + strand, within MMJJ_RS04575 at 853.833 kb on - strand, within MMJJ_RS04575 at 853.834 kb on + strand, within MMJJ_RS04575 at 853.834 kb on + strand, within MMJJ_RS04575 at 853.837 kb on - strand, within MMJJ_RS04575 at 853.838 kb on + strand, within MMJJ_RS04575 at 853.845 kb on + strand, within MMJJ_RS04575 at 853.846 kb on - strand, within MMJJ_RS04575 at 853.944 kb on - strand, within MMJJ_RS04575 at 853.953 kb on - strand, within MMJJ_RS04575 at 853.971 kb on - strand, within MMJJ_RS04575 at 854.048 kb on - strand, within MMJJ_RS04575 at 854.082 kb on - strand, within MMJJ_RS04575 at 854.083 kb on + strand, within MMJJ_RS04575 at 854.083 kb on + strand, within MMJJ_RS04575 at 854.092 kb on - strand, within MMJJ_RS04575 at 854.092 kb on - strand, within MMJJ_RS04575 at 854.093 kb on + strand, within MMJJ_RS04575 at 854.093 kb on + strand, within MMJJ_RS04575 at 854.105 kb on - strand, within MMJJ_RS04575 at 854.105 kb on - strand, within MMJJ_RS04575 at 854.105 kb on - strand, within MMJJ_RS04575 at 854.106 kb on + strand, within MMJJ_RS04575 at 854.109 kb on + strand, within MMJJ_RS04575 at 854.110 kb on - strand, within MMJJ_RS04575 at 854.110 kb on - strand, within MMJJ_RS04575 at 854.110 kb on - strand, within MMJJ_RS04575 at 854.111 kb on + strand, within MMJJ_RS04575 at 854.111 kb on + strand at 854.111 kb on + strand, within MMJJ_RS04575 at 854.111 kb on + strand, within MMJJ_RS04575 at 854.111 kb on + strand, within MMJJ_RS04575 at 854.118 kb on - strand, within MMJJ_RS04575 at 854.119 kb on + strand, within MMJJ_RS04575 at 854.124 kb on + strand, within MMJJ_RS04575 at 854.149 kb on + strand, within MMJJ_RS04575 at 854.150 kb on - strand, within MMJJ_RS04575 at 854.156 kb on + strand, within MMJJ_RS04575 at 854.178 kb on - strand, within MMJJ_RS04575 at 854.179 kb on + strand, within MMJJ_RS04575 at 854.196 kb on - strand, within MMJJ_RS04575 at 854.206 kb on + strand at 854.208 kb on - strand at 854.226 kb on - strand at 854.227 kb on + strand at 854.227 kb on + strand at 854.315 kb on - strand at 854.350 kb on + strand at 854.374 kb on - strand, within MMJJ_RS04580 at 854.396 kb on - strand, within MMJJ_RS04580 at 854.397 kb on + strand, within MMJJ_RS04580 at 854.402 kb on + strand, within MMJJ_RS04580 at 854.422 kb on - strand, within MMJJ_RS04580 at 854.422 kb on - strand, within MMJJ_RS04580 at 854.422 kb on - strand, within MMJJ_RS04580 at 854.423 kb on + strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.424 kb on - strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.425 kb on + strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.426 kb on - strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.427 kb on + strand, within MMJJ_RS04580 at 854.429 kb on + strand, within MMJJ_RS04580 at 854.429 kb on + strand, within MMJJ_RS04580 at 854.429 kb on + strand, within MMJJ_RS04580 at 854.436 kb on + strand, within MMJJ_RS04580 at 854.436 kb on + strand, within MMJJ_RS04580 at 854.436 kb on + strand, within MMJJ_RS04580 at 854.457 kb on + strand, within MMJJ_RS04580 at 854.458 kb on - strand, within MMJJ_RS04580 at 854.458 kb on - strand, within MMJJ_RS04580 at 854.459 kb on + strand, within MMJJ_RS04580 at 854.537 kb on + strand, within MMJJ_RS04580 at 854.543 kb on + strand, within MMJJ_RS04580 at 854.586 kb on + strand, within MMJJ_RS04580 at 854.642 kb on - strand, within MMJJ_RS04580 at 854.643 kb on + strand, within MMJJ_RS04580 at 854.648 kb on + strand, within MMJJ_RS04580 at 854.661 kb on + strand, within MMJJ_RS04580 at 854.691 kb on - strand, within MMJJ_RS04580 at 854.722 kb on - strand, within MMJJ_RS04580 at 854.797 kb on + strand, within MMJJ_RS04580 at 854.893 kb on - strand at 854.894 kb on + strand, within MMJJ_RS04580 at 854.935 kb on + strand, within MMJJ_RS04580 at 854.958 kb on + strand at 854.958 kb on + strand at 854.958 kb on + strand at 855.030 kb on + strand at 855.039 kb on - strand at 855.039 kb on - strand at 855.041 kb on - strand at 855.041 kb on - strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.042 kb on + strand at 855.043 kb on - strand at 855.043 kb on - strand at 855.043 kb on - strand at 855.044 kb on + strand at 855.044 kb on + strand at 855.044 kb on + strand at 855.048 kb on + strand at 855.060 kb on - strand at 855.061 kb on + strand at 855.061 kb on + strand at 855.061 kb on + strand at 855.065 kb on - strand at 855.065 kb on - strand at 855.065 kb on - strand at 855.066 kb on + strand at 855.066 kb on + strand at 855.074 kb on - strand at 855.075 kb on + strand at 855.075 kb on + strand at 855.076 kb on - strand at 855.077 kb on + strand at 855.077 kb on + strand at 855.086 kb on - strand at 855.107 kb on + strand at 855.131 kb on - strand at 855.131 kb on - strand at 855.131 kb on - strand at 855.139 kb on - strand at 855.175 kb on + strand at 855.190 kb on + strand at 855.228 kb on + strand at 855.243 kb on + strand at 855.243 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 853,588 + +0.4 853,647 - +3.0 853,794 + MMJJ_RS04575 0.27 +4.3 853,833 - MMJJ_RS04575 0.33 -1.2 853,834 + MMJJ_RS04575 0.34 -1.7 853,834 + MMJJ_RS04575 0.34 -1.6 853,837 - MMJJ_RS04575 0.34 -1.2 853,838 + MMJJ_RS04575 0.34 -0.2 853,845 + MMJJ_RS04575 0.35 +2.0 853,846 - MMJJ_RS04575 0.36 -2.1 853,944 - MMJJ_RS04575 0.51 +1.4 853,953 - MMJJ_RS04575 0.52 +2.5 853,971 - MMJJ_RS04575 0.55 -1.8 854,048 - MMJJ_RS04575 0.67 +2.1 854,082 - MMJJ_RS04575 0.72 -2.3 854,083 + MMJJ_RS04575 0.72 +2.6 854,083 + MMJJ_RS04575 0.72 -0.5 854,092 - MMJJ_RS04575 0.74 +2.5 854,092 - MMJJ_RS04575 0.74 +2.9 854,093 + MMJJ_RS04575 0.74 -1.8 854,093 + MMJJ_RS04575 0.74 -1.1 854,105 - MMJJ_RS04575 0.76 +0.1 854,105 - MMJJ_RS04575 0.76 +0.1 854,105 - MMJJ_RS04575 0.76 +0.6 854,106 + MMJJ_RS04575 0.76 +3.2 854,109 + MMJJ_RS04575 0.76 -1.8 854,110 - MMJJ_RS04575 0.76 -1.8 854,110 - MMJJ_RS04575 0.76 +0.4 854,110 - MMJJ_RS04575 0.76 -1.2 854,111 + MMJJ_RS04575 0.77 +2.2 854,111 + +1.4 854,111 + MMJJ_RS04575 0.77 +3.7 854,111 + MMJJ_RS04575 0.77 +0.4 854,111 + MMJJ_RS04575 0.77 -1.6 854,118 - MMJJ_RS04575 0.78 +1.0 854,119 + MMJJ_RS04575 0.78 +0.4 854,124 + MMJJ_RS04575 0.79 -2.5 854,149 + MMJJ_RS04575 0.82 -1.4 854,150 - MMJJ_RS04575 0.83 -1.8 854,156 + MMJJ_RS04575 0.84 -0.2 854,178 - MMJJ_RS04575 0.87 -0.9 854,179 + MMJJ_RS04575 0.87 +1.2 854,196 - MMJJ_RS04575 0.90 +1.0 854,206 + -1.7 854,208 - +2.4 854,226 - -1.4 854,227 + -1.3 854,227 + -0.2 854,315 - +3.8 854,350 + +2.5 854,374 - MMJJ_RS04580 0.13 +3.8 854,396 - MMJJ_RS04580 0.16 -1.4 854,397 + MMJJ_RS04580 0.16 -1.2 854,402 + MMJJ_RS04580 0.16 -0.1 854,422 - MMJJ_RS04580 0.19 -0.9 854,422 - MMJJ_RS04580 0.19 -1.6 854,422 - MMJJ_RS04580 0.19 +1.4 854,423 + MMJJ_RS04580 0.19 -1.9 854,424 - MMJJ_RS04580 0.19 -0.8 854,424 - MMJJ_RS04580 0.19 +1.4 854,424 - MMJJ_RS04580 0.19 +2.8 854,424 - MMJJ_RS04580 0.19 -1.7 854,424 - MMJJ_RS04580 0.19 -0.9 854,424 - MMJJ_RS04580 0.19 +1.4 854,424 - MMJJ_RS04580 0.19 +2.3 854,424 - MMJJ_RS04580 0.19 -0.9 854,425 + MMJJ_RS04580 0.19 +5.6 854,425 + MMJJ_RS04580 0.19 +2.5 854,425 + MMJJ_RS04580 0.19 -0.6 854,425 + MMJJ_RS04580 0.19 +1.4 854,425 + MMJJ_RS04580 0.19 +2.8 854,425 + MMJJ_RS04580 0.19 +4.7 854,425 + MMJJ_RS04580 0.19 +3.1 854,425 + MMJJ_RS04580 0.19 +2.3 854,425 + MMJJ_RS04580 0.19 +2.8 854,425 + MMJJ_RS04580 0.19 -0.2 854,426 - MMJJ_RS04580 0.20 +3.3 854,426 - MMJJ_RS04580 0.20 +0.5 854,426 - MMJJ_RS04580 0.20 +4.2 854,426 - MMJJ_RS04580 0.20 -0.9 854,426 - MMJJ_RS04580 0.20 +3.2 854,426 - MMJJ_RS04580 0.20 +1.8 854,426 - MMJJ_RS04580 0.20 +3.1 854,426 - MMJJ_RS04580 0.20 -2.9 854,426 - MMJJ_RS04580 0.20 -0.9 854,427 + MMJJ_RS04580 0.20 +0.8 854,427 + -0.2 854,427 + MMJJ_RS04580 0.20 +1.9 854,427 + MMJJ_RS04580 0.20 +3.3 854,427 + MMJJ_RS04580 0.20 +3.9 854,427 + MMJJ_RS04580 0.20 -1.0 854,427 + MMJJ_RS04580 0.20 +0.9 854,427 + MMJJ_RS04580 0.20 +0.1 854,427 + MMJJ_RS04580 0.20 -0.5 854,427 + MMJJ_RS04580 0.20 +0.6 854,427 + MMJJ_RS04580 0.20 +2.2 854,427 + MMJJ_RS04580 0.20 -1.5 854,429 + MMJJ_RS04580 0.20 -3.3 854,429 + MMJJ_RS04580 0.20 +0.4 854,429 + MMJJ_RS04580 0.20 +1.8 854,436 + MMJJ_RS04580 0.21 +1.2 854,436 + MMJJ_RS04580 0.21 -0.0 854,436 + MMJJ_RS04580 0.21 +2.4 854,457 + MMJJ_RS04580 0.24 +1.3 854,458 - MMJJ_RS04580 0.24 +1.5 854,458 - MMJJ_RS04580 0.24 -3.4 854,459 + MMJJ_RS04580 0.24 -0.2 854,537 + MMJJ_RS04580 0.34 +2.3 854,543 + MMJJ_RS04580 0.35 +0.9 854,586 + MMJJ_RS04580 0.41 +1.9 854,642 - MMJJ_RS04580 0.48 +3.7 854,643 + MMJJ_RS04580 0.49 +4.6 854,648 + MMJJ_RS04580 0.49 +0.4 854,661 + MMJJ_RS04580 0.51 -2.6 854,691 - MMJJ_RS04580 0.55 +0.1 854,722 - MMJJ_RS04580 0.59 +1.5 854,797 + MMJJ_RS04580 0.69 +2.1 854,893 - +0.4 854,894 + MMJJ_RS04580 0.82 +2.5 854,935 + MMJJ_RS04580 0.88 -1.4 854,958 + -0.5 854,958 + +0.4 854,958 + -1.4 855,030 + -0.3 855,039 - +1.3 855,039 - -1.2 855,041 - -0.5 855,041 - +0.1 855,042 + +3.3 855,042 + -2.3 855,042 + -0.2 855,042 + +1.1 855,042 + -2.1 855,042 + +2.6 855,043 - -2.4 855,043 - -1.5 855,043 - -0.8 855,044 + -0.9 855,044 + +0.4 855,044 + -0.2 855,048 + +0.9 855,060 - -1.4 855,061 + -2.5 855,061 + +1.2 855,061 + -1.3 855,065 - +0.4 855,065 - -2.4 855,065 - -1.2 855,066 + -1.2 855,066 + +0.9 855,074 - +1.7 855,075 + +0.6 855,075 + -1.5 855,076 - -2.4 855,077 + -0.8 855,077 + -1.8 855,086 - +4.0 855,107 + -2.5 855,131 - -0.2 855,131 - -0.4 855,131 - +1.4 855,139 - -1.6 855,175 + +0.2 855,190 + -2.7 855,228 + -1.6 855,243 + -2.1 855,243 + +0.6
Or see this region's nucleotide sequence