Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04565

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04555 and MMJJ_RS04560 are separated by 9 nucleotidesMMJJ_RS04560 and MMJJ_RS04565 are separated by 90 nucleotidesMMJJ_RS04565 and MMJJ_RS04570 are separated by 46 nucleotides MMJJ_RS04555: MMJJ_RS04555 - MATE family efflux transporter, at 849,791 to 851,173 _RS04555 MMJJ_RS04560: MMJJ_RS04560 - ABC transporter permease, at 851,183 to 851,944 _RS04560 MMJJ_RS04565: MMJJ_RS04565 - sirohydrochlorin nickelochelatase, at 852,035 to 852,472 _RS04565 MMJJ_RS04570: MMJJ_RS04570 - TRC40/GET3/ArsA family transport-energizing ATPase, at 852,519 to 853,556 _RS04570 Position (kb) 852 853Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 851.035 kb on - strandat 851.095 kb on - strandat 851.107 kb on + strandat 851.107 kb on + strandat 851.117 kb on - strandat 851.117 kb on - strandat 851.140 kb on - strandat 851.141 kb on + strandat 851.146 kb on + strandat 851.146 kb on + strandat 851.168 kb on + strandat 851.183 kb on + strandat 851.218 kb on - strandat 851.219 kb on + strandat 851.219 kb on + strandat 851.227 kb on - strandat 851.247 kb on - strandat 851.247 kb on - strandat 851.247 kb on - strandat 851.247 kb on - strandat 851.248 kb on + strandat 851.248 kb on + strandat 851.259 kb on - strandat 851.262 kb on - strand, within MMJJ_RS04560at 851.263 kb on + strand, within MMJJ_RS04560at 851.337 kb on - strand, within MMJJ_RS04560at 851.338 kb on + strand, within MMJJ_RS04560at 851.338 kb on + strand, within MMJJ_RS04560at 851.363 kb on - strand, within MMJJ_RS04560at 851.363 kb on - strand, within MMJJ_RS04560at 851.364 kb on + strand, within MMJJ_RS04560at 851.364 kb on + strand, within MMJJ_RS04560at 851.367 kb on - strand, within MMJJ_RS04560at 851.367 kb on - strand, within MMJJ_RS04560at 851.368 kb on + strand, within MMJJ_RS04560at 851.368 kb on + strand, within MMJJ_RS04560at 851.395 kb on + strand, within MMJJ_RS04560at 851.395 kb on + strand, within MMJJ_RS04560at 851.429 kb on + strand, within MMJJ_RS04560at 851.575 kb on + strand, within MMJJ_RS04560at 851.698 kb on + strand, within MMJJ_RS04560at 851.724 kb on - strand, within MMJJ_RS04560at 851.751 kb on - strand, within MMJJ_RS04560at 851.751 kb on - strand, within MMJJ_RS04560at 851.787 kb on + strand, within MMJJ_RS04560at 851.790 kb on - strand, within MMJJ_RS04560at 851.790 kb on - strand, within MMJJ_RS04560at 851.791 kb on + strand, within MMJJ_RS04560at 851.791 kb on + strand, within MMJJ_RS04560at 851.791 kb on + strand, within MMJJ_RS04560at 851.791 kb on + strand, within MMJJ_RS04560at 851.804 kb on - strand, within MMJJ_RS04560at 851.804 kb on - strand, within MMJJ_RS04560at 851.805 kb on + strand, within MMJJ_RS04560at 851.805 kb on + strand, within MMJJ_RS04560at 851.805 kb on + strand, within MMJJ_RS04560at 851.805 kb on + strand, within MMJJ_RS04560at 851.825 kb on - strand, within MMJJ_RS04560at 851.857 kb on + strand, within MMJJ_RS04560at 851.902 kb on + strandat 851.916 kb on + strandat 851.916 kb on + strandat 851.916 kb on + strandat 851.965 kb on - strandat 851.966 kb on + strandat 851.966 kb on + strandat 851.966 kb on + strandat 851.969 kb on - strandat 851.970 kb on + strandat 852.094 kb on - strand, within MMJJ_RS04565at 852.128 kb on + strand, within MMJJ_RS04565at 852.141 kb on - strand, within MMJJ_RS04565at 852.152 kb on + strand, within MMJJ_RS04565at 852.198 kb on - strand, within MMJJ_RS04565at 852.222 kb on - strand, within MMJJ_RS04565at 852.229 kb on + strand, within MMJJ_RS04565at 852.400 kb on + strandat 852.437 kb on + strandat 852.444 kb on - strandat 852.445 kb on + strandat 852.445 kb on + strandat 852.470 kb on - strandat 852.476 kb on + strandat 852.517 kb on + strandat 852.520 kb on - strandat 852.521 kb on + strandat 852.521 kb on + strandat 852.525 kb on - strandat 852.526 kb on + strandat 852.532 kb on + strandat 852.532 kb on + strandat 852.532 kb on + strandat 852.532 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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851,035 - -1.8
851,095 - +2.8
851,107 + -0.6
851,107 + -0.8
851,117 - -1.1
851,117 - +0.4
851,140 - -1.2
851,141 + -2.7
851,146 + -1.8
851,146 + -0.2
851,168 + -1.4
851,183 + -0.2
851,218 - +4.1
851,219 + +1.4
851,219 + +1.0
851,227 - -3.7
851,247 - +3.1
851,247 - +2.3
851,247 - +2.7
851,247 - +1.4
851,248 + -2.1
851,248 + +2.0
851,259 - -4.6
851,262 - MMJJ_RS04560 0.10 -2.3
851,263 + MMJJ_RS04560 0.10 +1.0
851,337 - MMJJ_RS04560 0.20 -0.1
851,338 + MMJJ_RS04560 0.20 +2.0
851,338 + MMJJ_RS04560 0.20 -1.8
851,363 - MMJJ_RS04560 0.24 -1.9
851,363 - MMJJ_RS04560 0.24 -2.2
851,364 + MMJJ_RS04560 0.24 +1.2
851,364 + MMJJ_RS04560 0.24 +1.4
851,367 - MMJJ_RS04560 0.24 +0.4
851,367 - MMJJ_RS04560 0.24 +2.5
851,368 + MMJJ_RS04560 0.24 +2.3
851,368 + MMJJ_RS04560 0.24 -0.9
851,395 + MMJJ_RS04560 0.28 -2.2
851,395 + MMJJ_RS04560 0.28 -0.2
851,429 + MMJJ_RS04560 0.32 +1.0
851,575 + MMJJ_RS04560 0.51 -3.5
851,698 + MMJJ_RS04560 0.68 +1.3
851,724 - MMJJ_RS04560 0.71 -0.6
851,751 - MMJJ_RS04560 0.75 -0.6
851,751 - MMJJ_RS04560 0.75 -2.3
851,787 + MMJJ_RS04560 0.79 +0.6
851,790 - MMJJ_RS04560 0.80 -2.0
851,790 - MMJJ_RS04560 0.80 -0.2
851,791 + MMJJ_RS04560 0.80 -2.3
851,791 + MMJJ_RS04560 0.80 -1.2
851,791 + MMJJ_RS04560 0.80 -0.2
851,791 + MMJJ_RS04560 0.80 -1.2
851,804 - MMJJ_RS04560 0.81 -0.3
851,804 - MMJJ_RS04560 0.81 +0.3
851,805 + MMJJ_RS04560 0.82 -1.1
851,805 + MMJJ_RS04560 0.82 +1.6
851,805 + MMJJ_RS04560 0.82 -2.1
851,805 + MMJJ_RS04560 0.82 +0.6
851,825 - MMJJ_RS04560 0.84 +0.6
851,857 + MMJJ_RS04560 0.88 +0.1
851,902 + -2.1
851,916 + +0.4
851,916 + -2.1
851,916 + -2.1
851,965 - -0.1
851,966 + -0.9
851,966 + +1.2
851,966 + -0.6
851,969 - +0.4
851,970 + -1.2
852,094 - MMJJ_RS04565 0.13 -0.6
852,128 + MMJJ_RS04565 0.21 -1.4
852,141 - MMJJ_RS04565 0.24 +0.4
852,152 + MMJJ_RS04565 0.27 -0.6
852,198 - MMJJ_RS04565 0.37 -0.6
852,222 - MMJJ_RS04565 0.43 -3.3
852,229 + MMJJ_RS04565 0.44 -0.6
852,400 + -0.2
852,437 + +0.4
852,444 - +0.4
852,445 + +1.4
852,445 + +0.4
852,470 - +1.8
852,476 + +3.9
852,517 + -3.1
852,520 - -2.3
852,521 + +4.7
852,521 + -0.2
852,525 - -0.2
852,526 + -2.9
852,532 + +0.0
852,532 + +0.4
852,532 + -0.2
852,532 + -3.2

Or see this region's nucleotide sequence