Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04540 and MMJJ_RS04545 are separated by 112 nucleotides MMJJ_RS04545 and MMJJ_RS04550 are separated by 1 nucleotides MMJJ_RS04550 and MMJJ_RS04555 are separated by 0 nucleotides
MMJJ_RS04540: MMJJ_RS04540 - site-2 protease family protein, at 847,122 to 848,249
_RS04540
MMJJ_RS04545: MMJJ_RS04545 - PadR family transcriptional regulator, at 848,362 to 848,820
_RS04545
MMJJ_RS04550: MMJJ_RS04550 - ATP-binding cassette domain-containing protein, at 848,822 to 849,790
_RS04550
MMJJ_RS04555: MMJJ_RS04555 - MATE family efflux transporter, at 849,791 to 851,173
_RS04555
Position (kb) 848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 847.363 kb on - strand, within MMJJ_RS04540 at 847.374 kb on - strand, within MMJJ_RS04540 at 847.375 kb on + strand, within MMJJ_RS04540 at 847.379 kb on - strand, within MMJJ_RS04540 at 847.379 kb on - strand, within MMJJ_RS04540 at 847.381 kb on - strand, within MMJJ_RS04540 at 847.382 kb on + strand, within MMJJ_RS04540 at 847.382 kb on + strand, within MMJJ_RS04540 at 847.382 kb on + strand, within MMJJ_RS04540 at 847.441 kb on + strand, within MMJJ_RS04540 at 847.441 kb on + strand, within MMJJ_RS04540 at 847.444 kb on - strand, within MMJJ_RS04540 at 847.444 kb on - strand, within MMJJ_RS04540 at 847.445 kb on + strand, within MMJJ_RS04540 at 847.445 kb on + strand, within MMJJ_RS04540 at 847.445 kb on + strand, within MMJJ_RS04540 at 847.445 kb on + strand, within MMJJ_RS04540 at 847.445 kb on + strand, within MMJJ_RS04540 at 847.463 kb on - strand, within MMJJ_RS04540 at 847.503 kb on - strand, within MMJJ_RS04540 at 847.503 kb on - strand, within MMJJ_RS04540 at 847.503 kb on - strand, within MMJJ_RS04540 at 847.503 kb on - strand, within MMJJ_RS04540 at 847.503 kb on - strand, within MMJJ_RS04540 at 847.504 kb on + strand at 847.504 kb on + strand, within MMJJ_RS04540 at 847.565 kb on + strand, within MMJJ_RS04540 at 847.569 kb on - strand, within MMJJ_RS04540 at 847.570 kb on + strand, within MMJJ_RS04540 at 847.604 kb on - strand, within MMJJ_RS04540 at 847.655 kb on + strand, within MMJJ_RS04540 at 847.671 kb on - strand at 847.690 kb on + strand, within MMJJ_RS04540 at 847.690 kb on + strand, within MMJJ_RS04540 at 847.767 kb on - strand, within MMJJ_RS04540 at 847.872 kb on + strand, within MMJJ_RS04540 at 847.884 kb on - strand, within MMJJ_RS04540 at 847.885 kb on + strand, within MMJJ_RS04540 at 847.885 kb on + strand, within MMJJ_RS04540 at 847.916 kb on - strand, within MMJJ_RS04540 at 847.917 kb on + strand, within MMJJ_RS04540 at 847.994 kb on - strand, within MMJJ_RS04540 at 847.995 kb on + strand, within MMJJ_RS04540 at 848.064 kb on - strand, within MMJJ_RS04540 at 848.065 kb on + strand, within MMJJ_RS04540 at 848.066 kb on - strand, within MMJJ_RS04540 at 848.067 kb on + strand, within MMJJ_RS04540 at 848.067 kb on + strand, within MMJJ_RS04540 at 848.089 kb on + strand, within MMJJ_RS04540 at 848.092 kb on + strand, within MMJJ_RS04540 at 848.137 kb on - strand at 848.185 kb on + strand at 848.192 kb on + strand at 848.211 kb on - strand at 848.241 kb on + strand at 848.267 kb on - strand at 848.267 kb on - strand at 848.267 kb on - strand at 848.272 kb on + strand at 848.272 kb on + strand at 848.282 kb on - strand at 848.282 kb on - strand at 848.304 kb on + strand at 848.308 kb on + strand at 848.316 kb on + strand at 848.346 kb on - strand at 848.360 kb on - strand at 848.374 kb on + strand at 848.374 kb on + strand at 848.382 kb on + strand at 848.405 kb on - strand at 848.606 kb on - strand, within MMJJ_RS04545 at 848.623 kb on + strand, within MMJJ_RS04545 at 848.662 kb on - strand, within MMJJ_RS04545 at 848.708 kb on - strand, within MMJJ_RS04545 at 848.819 kb on + strand at 848.882 kb on + strand at 848.893 kb on - strand at 848.958 kb on - strand, within MMJJ_RS04550 at 848.962 kb on - strand, within MMJJ_RS04550 at 848.964 kb on - strand, within MMJJ_RS04550 at 848.964 kb on - strand, within MMJJ_RS04550 at 848.965 kb on + strand, within MMJJ_RS04550 at 848.965 kb on + strand, within MMJJ_RS04550 at 848.968 kb on - strand, within MMJJ_RS04550 at 848.968 kb on - strand, within MMJJ_RS04550 at 848.969 kb on + strand, within MMJJ_RS04550 at 848.995 kb on - strand, within MMJJ_RS04550 at 849.026 kb on + strand, within MMJJ_RS04550 at 849.076 kb on - strand, within MMJJ_RS04550 at 849.131 kb on - strand, within MMJJ_RS04550 at 849.137 kb on - strand, within MMJJ_RS04550 at 849.138 kb on + strand, within MMJJ_RS04550 at 849.138 kb on + strand, within MMJJ_RS04550 at 849.187 kb on + strand, within MMJJ_RS04550 at 849.203 kb on + strand, within MMJJ_RS04550 at 849.209 kb on + strand, within MMJJ_RS04550 at 849.209 kb on + strand, within MMJJ_RS04550 at 849.267 kb on - strand, within MMJJ_RS04550 at 849.267 kb on - strand, within MMJJ_RS04550 at 849.267 kb on - strand, within MMJJ_RS04550 at 849.268 kb on + strand, within MMJJ_RS04550 at 849.268 kb on + strand, within MMJJ_RS04550 at 849.348 kb on + strand, within MMJJ_RS04550 at 849.348 kb on + strand, within MMJJ_RS04550 at 849.352 kb on - strand, within MMJJ_RS04550 at 849.353 kb on + strand, within MMJJ_RS04550 at 849.384 kb on - strand, within MMJJ_RS04550 at 849.390 kb on - strand, within MMJJ_RS04550 at 849.391 kb on + strand, within MMJJ_RS04550 at 849.391 kb on + strand, within MMJJ_RS04550 at 849.402 kb on + strand, within MMJJ_RS04550 at 849.586 kb on + strand, within MMJJ_RS04550 at 849.590 kb on - strand, within MMJJ_RS04550 at 849.590 kb on - strand, within MMJJ_RS04550 at 849.591 kb on + strand, within MMJJ_RS04550 at 849.675 kb on + strand, within MMJJ_RS04550 at 849.677 kb on + strand, within MMJJ_RS04550
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 847,363 - MMJJ_RS04540 0.21 +2.8 847,374 - MMJJ_RS04540 0.22 +0.4 847,375 + MMJJ_RS04540 0.22 -0.4 847,379 - MMJJ_RS04540 0.23 +0.6 847,379 - MMJJ_RS04540 0.23 +0.1 847,381 - MMJJ_RS04540 0.23 +0.5 847,382 + MMJJ_RS04540 0.23 -0.9 847,382 + MMJJ_RS04540 0.23 -2.3 847,382 + MMJJ_RS04540 0.23 -1.0 847,441 + MMJJ_RS04540 0.28 +2.9 847,441 + MMJJ_RS04540 0.28 -0.9 847,444 - MMJJ_RS04540 0.29 +0.8 847,444 - MMJJ_RS04540 0.29 -1.1 847,445 + MMJJ_RS04540 0.29 +0.4 847,445 + MMJJ_RS04540 0.29 +1.7 847,445 + MMJJ_RS04540 0.29 -1.5 847,445 + MMJJ_RS04540 0.29 -1.7 847,445 + MMJJ_RS04540 0.29 -0.3 847,463 - MMJJ_RS04540 0.30 +0.6 847,503 - MMJJ_RS04540 0.34 -1.1 847,503 - MMJJ_RS04540 0.34 +0.7 847,503 - MMJJ_RS04540 0.34 -0.5 847,503 - MMJJ_RS04540 0.34 -1.5 847,503 - MMJJ_RS04540 0.34 +1.4 847,504 + +0.4 847,504 + MMJJ_RS04540 0.34 -1.7 847,565 + MMJJ_RS04540 0.39 +2.1 847,569 - MMJJ_RS04540 0.40 +2.0 847,570 + MMJJ_RS04540 0.40 +0.3 847,604 - MMJJ_RS04540 0.43 +0.0 847,655 + MMJJ_RS04540 0.47 +1.3 847,671 - +0.4 847,690 + MMJJ_RS04540 0.50 +1.3 847,690 + MMJJ_RS04540 0.50 +0.2 847,767 - MMJJ_RS04540 0.57 +3.1 847,872 + MMJJ_RS04540 0.66 +2.2 847,884 - MMJJ_RS04540 0.68 +2.8 847,885 + MMJJ_RS04540 0.68 +1.1 847,885 + MMJJ_RS04540 0.68 -0.8 847,916 - MMJJ_RS04540 0.70 +0.2 847,917 + MMJJ_RS04540 0.70 +1.2 847,994 - MMJJ_RS04540 0.77 +2.0 847,995 + MMJJ_RS04540 0.77 -1.2 848,064 - MMJJ_RS04540 0.84 +3.7 848,065 + MMJJ_RS04540 0.84 -0.6 848,066 - MMJJ_RS04540 0.84 -1.2 848,067 + MMJJ_RS04540 0.84 -3.1 848,067 + MMJJ_RS04540 0.84 +4.7 848,089 + MMJJ_RS04540 0.86 +0.3 848,092 + MMJJ_RS04540 0.86 +1.5 848,137 - -0.0 848,185 + -0.7 848,192 + -0.6 848,211 - +1.8 848,241 + +0.0 848,267 - +1.3 848,267 - +0.5 848,267 - -2.3 848,272 + -0.5 848,272 + +1.0 848,282 - -2.1 848,282 - +1.4 848,304 + +4.1 848,308 + -1.9 848,316 + +1.9 848,346 - -2.5 848,360 - +4.4 848,374 + +1.3 848,374 + +0.6 848,382 + +0.5 848,405 - +1.9 848,606 - MMJJ_RS04545 0.53 -0.1 848,623 + MMJJ_RS04545 0.57 -2.6 848,662 - MMJJ_RS04545 0.65 -1.8 848,708 - MMJJ_RS04545 0.75 -1.7 848,819 + -1.2 848,882 + +2.5 848,893 - -1.8 848,958 - MMJJ_RS04550 0.14 -1.2 848,962 - MMJJ_RS04550 0.14 -2.7 848,964 - MMJJ_RS04550 0.15 +1.5 848,964 - MMJJ_RS04550 0.15 -2.3 848,965 + MMJJ_RS04550 0.15 -0.2 848,965 + MMJJ_RS04550 0.15 +0.5 848,968 - MMJJ_RS04550 0.15 +2.2 848,968 - MMJJ_RS04550 0.15 -1.9 848,969 + MMJJ_RS04550 0.15 +1.8 848,995 - MMJJ_RS04550 0.18 -0.7 849,026 + MMJJ_RS04550 0.21 +3.2 849,076 - MMJJ_RS04550 0.26 -0.7 849,131 - MMJJ_RS04550 0.32 -1.3 849,137 - MMJJ_RS04550 0.33 +2.1 849,138 + MMJJ_RS04550 0.33 +1.8 849,138 + MMJJ_RS04550 0.33 -1.1 849,187 + MMJJ_RS04550 0.38 -2.1 849,203 + MMJJ_RS04550 0.39 -1.3 849,209 + MMJJ_RS04550 0.40 -1.9 849,209 + MMJJ_RS04550 0.40 -0.2 849,267 - MMJJ_RS04550 0.46 -1.3 849,267 - MMJJ_RS04550 0.46 +1.7 849,267 - MMJJ_RS04550 0.46 -0.5 849,268 + MMJJ_RS04550 0.46 +0.7 849,268 + MMJJ_RS04550 0.46 -0.9 849,348 + MMJJ_RS04550 0.54 +2.4 849,348 + MMJJ_RS04550 0.54 +0.5 849,352 - MMJJ_RS04550 0.55 +0.9 849,353 + MMJJ_RS04550 0.55 -1.2 849,384 - MMJJ_RS04550 0.58 -1.1 849,390 - MMJJ_RS04550 0.59 -2.6 849,391 + MMJJ_RS04550 0.59 +1.3 849,391 + MMJJ_RS04550 0.59 -1.5 849,402 + MMJJ_RS04550 0.60 +1.3 849,586 + MMJJ_RS04550 0.79 -1.4 849,590 - MMJJ_RS04550 0.79 -2.0 849,590 - MMJJ_RS04550 0.79 +0.3 849,591 + MMJJ_RS04550 0.79 -1.9 849,675 + MMJJ_RS04550 0.88 -0.6 849,677 + MMJJ_RS04550 0.88 -0.5
Or see this region's nucleotide sequence