Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04520 and MMJJ_RS04525 are separated by 81 nucleotides MMJJ_RS04525 and MMJJ_RS04530 are separated by 2 nucleotides MMJJ_RS04530 and MMJJ_RS04535 are separated by 3 nucleotides MMJJ_RS04535 and MMJJ_RS04540 are separated by 21 nucleotides
MMJJ_RS04520: MMJJ_RS04520 - coenzyme F430 synthase, at 843,922 to 845,124
_RS04520
MMJJ_RS04525: MMJJ_RS04525 - hypothetical protein, at 845,206 to 845,490
_RS04525
MMJJ_RS04530: MMJJ_RS04530 - iron export ABC transporter permease subunit FetB, at 845,493 to 846,239
_RS04530
MMJJ_RS04535: MMJJ_RS04535 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 846,243 to 847,100
_RS04535
MMJJ_RS04540: MMJJ_RS04540 - site-2 protease family protein, at 847,122 to 848,249
_RS04540
Position (kb) 845
846
847 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 844.558 kb on + strand, within MMJJ_RS04520 at 844.575 kb on + strand, within MMJJ_RS04520 at 844.690 kb on - strand, within MMJJ_RS04520 at 844.729 kb on + strand, within MMJJ_RS04520 at 844.732 kb on + strand, within MMJJ_RS04520 at 844.786 kb on + strand, within MMJJ_RS04520 at 844.935 kb on + strand, within MMJJ_RS04520 at 845.092 kb on - strand at 845.147 kb on + strand at 845.163 kb on - strand at 845.213 kb on - strand at 845.213 kb on - strand at 845.213 kb on - strand at 845.213 kb on - strand at 845.213 kb on - strand at 845.213 kb on - strand at 845.214 kb on + strand at 845.214 kb on + strand at 845.214 kb on + strand at 845.228 kb on - strand at 845.231 kb on - strand at 845.231 kb on - strand at 845.231 kb on - strand at 845.232 kb on + strand at 845.236 kb on + strand, within MMJJ_RS04525 at 845.238 kb on - strand, within MMJJ_RS04525 at 845.238 kb on - strand, within MMJJ_RS04525 at 845.239 kb on + strand, within MMJJ_RS04525 at 845.359 kb on + strand, within MMJJ_RS04525 at 845.385 kb on - strand, within MMJJ_RS04525 at 845.468 kb on - strand at 845.513 kb on - strand at 845.514 kb on + strand at 845.525 kb on + strand at 845.533 kb on - strand at 845.561 kb on - strand at 845.562 kb on + strand at 845.585 kb on - strand, within MMJJ_RS04530 at 845.585 kb on - strand, within MMJJ_RS04530 at 845.585 kb on - strand, within MMJJ_RS04530 at 845.585 kb on - strand, within MMJJ_RS04530 at 845.585 kb on - strand, within MMJJ_RS04530 at 845.586 kb on + strand, within MMJJ_RS04530 at 845.586 kb on + strand, within MMJJ_RS04530 at 845.586 kb on + strand, within MMJJ_RS04530 at 845.590 kb on + strand, within MMJJ_RS04530 at 845.611 kb on + strand, within MMJJ_RS04530 at 845.657 kb on - strand, within MMJJ_RS04530 at 845.658 kb on + strand, within MMJJ_RS04530 at 845.689 kb on + strand, within MMJJ_RS04530 at 845.733 kb on + strand, within MMJJ_RS04530 at 845.826 kb on - strand, within MMJJ_RS04530 at 845.828 kb on - strand, within MMJJ_RS04530 at 845.829 kb on + strand, within MMJJ_RS04530 at 845.877 kb on - strand, within MMJJ_RS04530 at 845.878 kb on + strand, within MMJJ_RS04530 at 845.895 kb on - strand, within MMJJ_RS04530 at 845.895 kb on - strand, within MMJJ_RS04530 at 845.895 kb on - strand, within MMJJ_RS04530 at 845.946 kb on + strand, within MMJJ_RS04530 at 845.970 kb on - strand, within MMJJ_RS04530 at 845.970 kb on - strand, within MMJJ_RS04530 at 845.970 kb on - strand, within MMJJ_RS04530 at 845.973 kb on - strand, within MMJJ_RS04530 at 846.039 kb on - strand, within MMJJ_RS04530 at 846.040 kb on + strand, within MMJJ_RS04530 at 846.043 kb on + strand, within MMJJ_RS04530 at 846.043 kb on + strand, within MMJJ_RS04530 at 846.047 kb on - strand, within MMJJ_RS04530 at 846.047 kb on - strand, within MMJJ_RS04530 at 846.048 kb on + strand, within MMJJ_RS04530 at 846.074 kb on - strand, within MMJJ_RS04530 at 846.141 kb on - strand, within MMJJ_RS04530 at 846.142 kb on + strand, within MMJJ_RS04530 at 846.180 kb on - strand at 846.180 kb on - strand at 846.262 kb on + strand at 846.349 kb on - strand, within MMJJ_RS04535 at 846.349 kb on - strand, within MMJJ_RS04535 at 846.350 kb on + strand, within MMJJ_RS04535 at 846.350 kb on + strand, within MMJJ_RS04535 at 846.350 kb on + strand, within MMJJ_RS04535 at 846.352 kb on - strand, within MMJJ_RS04535 at 846.352 kb on - strand, within MMJJ_RS04535 at 846.353 kb on + strand, within MMJJ_RS04535 at 846.389 kb on - strand, within MMJJ_RS04535 at 846.389 kb on - strand, within MMJJ_RS04535 at 846.389 kb on - strand, within MMJJ_RS04535 at 846.390 kb on + strand, within MMJJ_RS04535 at 846.390 kb on + strand, within MMJJ_RS04535 at 846.390 kb on + strand, within MMJJ_RS04535 at 846.444 kb on - strand, within MMJJ_RS04535 at 846.445 kb on + strand, within MMJJ_RS04535 at 846.475 kb on - strand, within MMJJ_RS04535 at 846.475 kb on - strand, within MMJJ_RS04535 at 846.475 kb on - strand, within MMJJ_RS04535 at 846.476 kb on + strand, within MMJJ_RS04535 at 846.477 kb on - strand, within MMJJ_RS04535 at 846.477 kb on - strand, within MMJJ_RS04535 at 846.477 kb on - strand, within MMJJ_RS04535 at 846.477 kb on - strand, within MMJJ_RS04535 at 846.477 kb on - strand, within MMJJ_RS04535 at 846.478 kb on + strand, within MMJJ_RS04535 at 846.478 kb on + strand, within MMJJ_RS04535 at 846.478 kb on + strand, within MMJJ_RS04535 at 846.478 kb on + strand, within MMJJ_RS04535 at 846.494 kb on - strand, within MMJJ_RS04535 at 846.497 kb on - strand, within MMJJ_RS04535 at 846.551 kb on - strand, within MMJJ_RS04535 at 846.559 kb on - strand, within MMJJ_RS04535 at 846.559 kb on - strand, within MMJJ_RS04535 at 846.559 kb on - strand, within MMJJ_RS04535 at 846.559 kb on - strand, within MMJJ_RS04535 at 846.559 kb on - strand, within MMJJ_RS04535 at 846.560 kb on + strand, within MMJJ_RS04535 at 846.560 kb on + strand, within MMJJ_RS04535 at 846.560 kb on + strand, within MMJJ_RS04535 at 846.560 kb on + strand, within MMJJ_RS04535 at 846.560 kb on + strand, within MMJJ_RS04535 at 846.587 kb on + strand, within MMJJ_RS04535 at 846.637 kb on + strand, within MMJJ_RS04535 at 846.699 kb on - strand, within MMJJ_RS04535 at 846.714 kb on - strand, within MMJJ_RS04535 at 846.834 kb on + strand, within MMJJ_RS04535 at 846.888 kb on - strand, within MMJJ_RS04535 at 846.918 kb on + strand, within MMJJ_RS04535 at 846.952 kb on + strand, within MMJJ_RS04535 at 846.952 kb on + strand, within MMJJ_RS04535 at 846.955 kb on + strand, within MMJJ_RS04535 at 846.967 kb on + strand, within MMJJ_RS04535 at 847.017 kb on + strand at 847.020 kb on + strand at 847.060 kb on - strand at 847.060 kb on - strand at 847.060 kb on - strand at 847.061 kb on + strand at 847.062 kb on - strand at 847.063 kb on + strand at 847.063 kb on + strand at 847.096 kb on + strand at 847.136 kb on + strand at 847.149 kb on - strand at 847.150 kb on + strand at 847.152 kb on - strand at 847.153 kb on + strand at 847.164 kb on - strand at 847.164 kb on - strand at 847.170 kb on - strand at 847.170 kb on - strand at 847.171 kb on + strand at 847.171 kb on + strand at 847.171 kb on + strand at 847.172 kb on - strand at 847.172 kb on - strand at 847.172 kb on - strand at 847.172 kb on - strand at 847.173 kb on + strand at 847.173 kb on + strand at 847.173 kb on + strand at 847.173 kb on + strand at 847.173 kb on + strand at 847.199 kb on - strand at 847.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 844,558 + MMJJ_RS04520 0.53 -0.2 844,575 + MMJJ_RS04520 0.54 -2.2 844,690 - MMJJ_RS04520 0.64 +0.4 844,729 + MMJJ_RS04520 0.67 +2.4 844,732 + MMJJ_RS04520 0.67 +0.9 844,786 + MMJJ_RS04520 0.72 -0.6 844,935 + MMJJ_RS04520 0.84 -0.2 845,092 - -0.9 845,147 + -1.2 845,163 - +5.6 845,213 - -1.4 845,213 - +0.2 845,213 - -0.9 845,213 - +1.4 845,213 - -0.2 845,213 - +2.4 845,214 + -0.6 845,214 + +1.0 845,214 + -1.2 845,228 - -0.6 845,231 - +3.1 845,231 - +0.7 845,231 - -0.1 845,232 + +3.0 845,236 + MMJJ_RS04525 0.11 -1.6 845,238 - MMJJ_RS04525 0.11 -0.9 845,238 - MMJJ_RS04525 0.11 -3.3 845,239 + MMJJ_RS04525 0.12 -2.3 845,359 + MMJJ_RS04525 0.54 +1.3 845,385 - MMJJ_RS04525 0.63 -1.1 845,468 - -0.8 845,513 - +1.9 845,514 + -1.2 845,525 + +1.0 845,533 - -0.7 845,561 - -1.4 845,562 + +1.1 845,585 - MMJJ_RS04530 0.12 +0.3 845,585 - MMJJ_RS04530 0.12 +0.2 845,585 - MMJJ_RS04530 0.12 -2.8 845,585 - MMJJ_RS04530 0.12 -0.7 845,585 - MMJJ_RS04530 0.12 +1.9 845,586 + MMJJ_RS04530 0.12 +0.6 845,586 + MMJJ_RS04530 0.12 -1.7 845,586 + MMJJ_RS04530 0.12 +1.5 845,590 + MMJJ_RS04530 0.13 -1.8 845,611 + MMJJ_RS04530 0.16 +0.1 845,657 - MMJJ_RS04530 0.22 +0.8 845,658 + MMJJ_RS04530 0.22 +0.1 845,689 + MMJJ_RS04530 0.26 +3.1 845,733 + MMJJ_RS04530 0.32 -1.9 845,826 - MMJJ_RS04530 0.45 -1.4 845,828 - MMJJ_RS04530 0.45 +2.7 845,829 + MMJJ_RS04530 0.45 -0.5 845,877 - MMJJ_RS04530 0.51 -1.8 845,878 + MMJJ_RS04530 0.52 +0.6 845,895 - MMJJ_RS04530 0.54 +0.2 845,895 - MMJJ_RS04530 0.54 +0.9 845,895 - MMJJ_RS04530 0.54 -1.8 845,946 + MMJJ_RS04530 0.61 +1.4 845,970 - MMJJ_RS04530 0.64 +1.6 845,970 - MMJJ_RS04530 0.64 +1.8 845,970 - MMJJ_RS04530 0.64 -1.6 845,973 - MMJJ_RS04530 0.64 -1.8 846,039 - MMJJ_RS04530 0.73 +0.4 846,040 + MMJJ_RS04530 0.73 +1.7 846,043 + MMJJ_RS04530 0.74 +1.5 846,043 + MMJJ_RS04530 0.74 -0.8 846,047 - MMJJ_RS04530 0.74 +0.8 846,047 - MMJJ_RS04530 0.74 +1.0 846,048 + MMJJ_RS04530 0.74 -1.9 846,074 - MMJJ_RS04530 0.78 +2.2 846,141 - MMJJ_RS04530 0.87 -0.8 846,142 + MMJJ_RS04530 0.87 -0.5 846,180 - -2.5 846,180 - -2.5 846,262 + -0.6 846,349 - MMJJ_RS04535 0.12 +0.4 846,349 - MMJJ_RS04535 0.12 +3.0 846,350 + MMJJ_RS04535 0.12 +0.3 846,350 + MMJJ_RS04535 0.12 +0.7 846,350 + MMJJ_RS04535 0.12 +3.3 846,352 - MMJJ_RS04535 0.13 -1.2 846,352 - MMJJ_RS04535 0.13 -2.0 846,353 + MMJJ_RS04535 0.13 +1.5 846,389 - MMJJ_RS04535 0.17 +0.8 846,389 - MMJJ_RS04535 0.17 +0.1 846,389 - MMJJ_RS04535 0.17 +1.5 846,390 + MMJJ_RS04535 0.17 +1.6 846,390 + MMJJ_RS04535 0.17 +0.6 846,390 + MMJJ_RS04535 0.17 -1.6 846,444 - MMJJ_RS04535 0.23 -2.8 846,445 + MMJJ_RS04535 0.24 +1.5 846,475 - MMJJ_RS04535 0.27 -1.5 846,475 - MMJJ_RS04535 0.27 +1.8 846,475 - MMJJ_RS04535 0.27 -1.3 846,476 + MMJJ_RS04535 0.27 +0.4 846,477 - MMJJ_RS04535 0.27 +2.3 846,477 - MMJJ_RS04535 0.27 -3.4 846,477 - MMJJ_RS04535 0.27 +2.9 846,477 - MMJJ_RS04535 0.27 -0.8 846,477 - MMJJ_RS04535 0.27 -1.8 846,478 + MMJJ_RS04535 0.27 -1.3 846,478 + MMJJ_RS04535 0.27 +1.0 846,478 + MMJJ_RS04535 0.27 +0.6 846,478 + MMJJ_RS04535 0.27 -0.6 846,494 - MMJJ_RS04535 0.29 -0.6 846,497 - MMJJ_RS04535 0.30 -2.2 846,551 - MMJJ_RS04535 0.36 +1.1 846,559 - MMJJ_RS04535 0.37 -0.6 846,559 - MMJJ_RS04535 0.37 +0.4 846,559 - MMJJ_RS04535 0.37 +0.8 846,559 - MMJJ_RS04535 0.37 +2.1 846,559 - MMJJ_RS04535 0.37 -2.8 846,560 + MMJJ_RS04535 0.37 -0.7 846,560 + MMJJ_RS04535 0.37 +0.6 846,560 + MMJJ_RS04535 0.37 +1.5 846,560 + MMJJ_RS04535 0.37 +2.7 846,560 + MMJJ_RS04535 0.37 +3.2 846,587 + MMJJ_RS04535 0.40 +1.1 846,637 + MMJJ_RS04535 0.46 +2.1 846,699 - MMJJ_RS04535 0.53 -2.9 846,714 - MMJJ_RS04535 0.55 -2.0 846,834 + MMJJ_RS04535 0.69 -0.7 846,888 - MMJJ_RS04535 0.75 -1.2 846,918 + MMJJ_RS04535 0.79 +3.8 846,952 + MMJJ_RS04535 0.83 -0.7 846,952 + MMJJ_RS04535 0.83 -1.5 846,955 + MMJJ_RS04535 0.83 +0.8 846,967 + MMJJ_RS04535 0.84 -1.2 847,017 + -3.7 847,020 + +1.1 847,060 - -0.2 847,060 - -0.6 847,060 - +2.3 847,061 + -1.1 847,062 - +1.6 847,063 + +1.3 847,063 + +3.3 847,096 + -2.4 847,136 + -4.1 847,149 - +0.4 847,150 + -2.3 847,152 - +2.1 847,153 + -1.3 847,164 - +1.3 847,164 - +3.8 847,170 - -0.5 847,170 - +1.6 847,171 + +1.4 847,171 + -0.2 847,171 + +3.1 847,172 - +1.4 847,172 - -1.9 847,172 - -2.1 847,172 - -0.2 847,173 + +3.0 847,173 + +0.9 847,173 + -1.9 847,173 + +2.4 847,173 + -2.9 847,199 - -0.2 847,203 - +0.1
Or see this region's nucleotide sequence