Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04475 and MMJJ_RS04480 are separated by 170 nucleotides MMJJ_RS04480 and MMJJ_RS04485 are separated by 143 nucleotides MMJJ_RS04485 and MMJJ_RS04490 are separated by 172 nucleotides
MMJJ_RS04475: MMJJ_RS04475 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 833,242 to 833,985
_RS04475
MMJJ_RS04480: MMJJ_RS04480 - hypothetical protein, at 834,156 to 834,368
_RS04480
MMJJ_RS04485: MMJJ_RS04485 - riboflavin synthase, at 834,512 to 834,982
_RS04485
MMJJ_RS04490: MMJJ_RS04490 - AIR synthase-related protein, at 835,155 to 838,124
_RS04490
Position (kb) 834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 833.565 kb on + strand, within MMJJ_RS04475 at 833.565 kb on + strand, within MMJJ_RS04475 at 833.566 kb on - strand, within MMJJ_RS04475 at 833.649 kb on - strand, within MMJJ_RS04475 at 833.650 kb on + strand, within MMJJ_RS04475 at 833.760 kb on - strand, within MMJJ_RS04475 at 833.841 kb on - strand at 833.929 kb on + strand at 834.068 kb on - strand at 834.069 kb on + strand at 834.070 kb on - strand at 834.070 kb on - strand at 834.070 kb on - strand at 834.071 kb on + strand at 834.071 kb on + strand at 834.104 kb on + strand at 834.135 kb on + strand at 834.135 kb on + strand at 834.139 kb on + strand at 834.155 kb on - strand at 834.164 kb on - strand at 834.179 kb on - strand, within MMJJ_RS04480 at 834.179 kb on - strand, within MMJJ_RS04480 at 834.181 kb on - strand, within MMJJ_RS04480 at 834.276 kb on - strand, within MMJJ_RS04480 at 834.278 kb on - strand, within MMJJ_RS04480 at 834.350 kb on - strand at 834.395 kb on + strand at 834.395 kb on + strand at 834.397 kb on - strand at 834.397 kb on - strand at 834.414 kb on - strand at 834.462 kb on + strand at 834.467 kb on + strand at 834.470 kb on - strand at 834.470 kb on - strand at 834.476 kb on + strand at 834.476 kb on + strand at 834.476 kb on + strand at 834.476 kb on + strand at 834.476 kb on + strand at 834.485 kb on - strand at 834.486 kb on + strand at 834.486 kb on + strand at 834.525 kb on - strand at 834.525 kb on - strand at 834.605 kb on + strand, within MMJJ_RS04485 at 834.613 kb on + strand, within MMJJ_RS04485 at 834.621 kb on + strand, within MMJJ_RS04485 at 834.691 kb on - strand, within MMJJ_RS04485 at 834.691 kb on - strand, within MMJJ_RS04485 at 834.794 kb on + strand, within MMJJ_RS04485 at 834.794 kb on + strand, within MMJJ_RS04485 at 834.843 kb on - strand, within MMJJ_RS04485 at 834.888 kb on - strand, within MMJJ_RS04485 at 834.888 kb on - strand, within MMJJ_RS04485 at 834.893 kb on - strand, within MMJJ_RS04485 at 834.893 kb on - strand, within MMJJ_RS04485 at 834.893 kb on - strand, within MMJJ_RS04485 at 834.893 kb on - strand, within MMJJ_RS04485 at 834.894 kb on + strand, within MMJJ_RS04485 at 834.894 kb on + strand, within MMJJ_RS04485 at 834.894 kb on + strand, within MMJJ_RS04485 at 834.894 kb on + strand, within MMJJ_RS04485 at 834.894 kb on + strand, within MMJJ_RS04485 at 834.904 kb on - strand, within MMJJ_RS04485 at 835.034 kb on - strand at 835.034 kb on - strand at 835.034 kb on - strand at 835.035 kb on + strand at 835.035 kb on + strand at 835.039 kb on - strand at 835.043 kb on - strand at 835.043 kb on - strand at 835.044 kb on + strand at 835.064 kb on - strand at 835.065 kb on + strand at 835.070 kb on - strand at 835.081 kb on + strand at 835.969 kb on - strand, within MMJJ_RS04490
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 833,565 + MMJJ_RS04475 0.43 -0.2 833,565 + MMJJ_RS04475 0.43 -0.9 833,566 - MMJJ_RS04475 0.44 -0.8 833,649 - MMJJ_RS04475 0.55 +0.4 833,650 + MMJJ_RS04475 0.55 -2.1 833,760 - MMJJ_RS04475 0.70 -0.9 833,841 - +1.4 833,929 + -2.6 834,068 - -2.8 834,069 + +1.1 834,070 - -1.7 834,070 - -1.1 834,070 - -1.2 834,071 + -2.5 834,071 + +0.7 834,104 + +0.7 834,135 + +1.1 834,135 + +2.3 834,139 + +0.3 834,155 - +1.4 834,164 - -0.2 834,179 - MMJJ_RS04480 0.11 -0.6 834,179 - MMJJ_RS04480 0.11 -1.5 834,181 - MMJJ_RS04480 0.12 -1.6 834,276 - MMJJ_RS04480 0.56 +2.1 834,278 - MMJJ_RS04480 0.57 +2.5 834,350 - -1.1 834,395 + -1.8 834,395 + +0.2 834,397 - -2.3 834,397 - +0.5 834,414 - +0.9 834,462 + -2.4 834,467 + -2.2 834,470 - -0.9 834,470 - -2.5 834,476 + +1.0 834,476 + -0.7 834,476 + -0.6 834,476 + -2.1 834,476 + -1.9 834,485 - -0.2 834,486 + -1.1 834,486 + -1.6 834,525 - +1.4 834,525 - -0.2 834,605 + MMJJ_RS04485 0.20 -3.3 834,613 + MMJJ_RS04485 0.21 -2.8 834,621 + MMJJ_RS04485 0.23 -1.5 834,691 - MMJJ_RS04485 0.38 -0.8 834,691 - MMJJ_RS04485 0.38 -2.5 834,794 + MMJJ_RS04485 0.60 -1.2 834,794 + MMJJ_RS04485 0.60 -0.6 834,843 - MMJJ_RS04485 0.70 -3.0 834,888 - MMJJ_RS04485 0.80 +0.4 834,888 - MMJJ_RS04485 0.80 -0.9 834,893 - MMJJ_RS04485 0.81 -0.9 834,893 - MMJJ_RS04485 0.81 -1.4 834,893 - MMJJ_RS04485 0.81 -1.2 834,893 - MMJJ_RS04485 0.81 -0.4 834,894 + MMJJ_RS04485 0.81 -0.9 834,894 + MMJJ_RS04485 0.81 -1.6 834,894 + MMJJ_RS04485 0.81 -1.2 834,894 + MMJJ_RS04485 0.81 -3.1 834,894 + MMJJ_RS04485 0.81 -1.9 834,904 - MMJJ_RS04485 0.83 -2.5 835,034 - -0.6 835,034 - +0.9 835,034 - +0.6 835,035 + -0.8 835,035 + +1.5 835,039 - -2.7 835,043 - +0.2 835,043 - +2.4 835,044 + +2.1 835,064 - +0.8 835,065 + -1.4 835,070 - -1.2 835,081 + +3.0 835,969 - MMJJ_RS04490 0.27 -1.4
Or see this region's nucleotide sequence