Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04405 and MMJJ_RS04410 are separated by 83 nucleotides MMJJ_RS04410 and MMJJ_RS04415 are separated by 126 nucleotides MMJJ_RS04415 and MMJJ_RS04420 are separated by 569 nucleotides MMJJ_RS04420 and MMJJ_RS04425 overlap by 11 nucleotides
MMJJ_RS04405: MMJJ_RS04405 - hypothetical protein, at 823,367 to 823,735
_RS04405
MMJJ_RS04410: MMJJ_RS04410 - hypothetical protein, at 823,819 to 824,229
_RS04410
MMJJ_RS04415: MMJJ_RS04415 - hypothetical protein, at 824,356 to 824,550
_RS04415
MMJJ_RS04420: MMJJ_RS04420 - type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family, at 825,120 to 825,407
_RS04420
MMJJ_RS04425: MMJJ_RS04425 - hypothetical protein, at 825,397 to 825,627
_RS04425
Position (kb) 824
825 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 823.368 kb on - strand at 823.393 kb on + strand at 823.417 kb on + strand, within MMJJ_RS04405 at 823.498 kb on - strand, within MMJJ_RS04405 at 823.498 kb on - strand, within MMJJ_RS04405 at 823.498 kb on - strand, within MMJJ_RS04405 at 823.504 kb on - strand, within MMJJ_RS04405 at 823.504 kb on - strand, within MMJJ_RS04405 at 823.504 kb on - strand, within MMJJ_RS04405 at 823.504 kb on - strand, within MMJJ_RS04405 at 823.504 kb on - strand, within MMJJ_RS04405 at 823.504 kb on - strand, within MMJJ_RS04405 at 823.505 kb on + strand, within MMJJ_RS04405 at 823.505 kb on + strand, within MMJJ_RS04405 at 823.505 kb on + strand, within MMJJ_RS04405 at 823.515 kb on + strand, within MMJJ_RS04405 at 823.515 kb on + strand, within MMJJ_RS04405 at 823.535 kb on - strand, within MMJJ_RS04405 at 823.535 kb on - strand, within MMJJ_RS04405 at 823.567 kb on - strand, within MMJJ_RS04405 at 823.572 kb on + strand, within MMJJ_RS04405 at 823.595 kb on - strand, within MMJJ_RS04405 at 823.595 kb on - strand, within MMJJ_RS04405 at 823.596 kb on + strand, within MMJJ_RS04405 at 823.608 kb on + strand, within MMJJ_RS04405 at 823.712 kb on - strand at 823.712 kb on - strand at 823.712 kb on - strand at 823.713 kb on + strand at 823.713 kb on + strand at 823.787 kb on + strand at 823.788 kb on - strand at 823.801 kb on - strand at 823.850 kb on + strand at 823.853 kb on - strand at 823.853 kb on - strand at 823.903 kb on - strand, within MMJJ_RS04410 at 824.026 kb on - strand, within MMJJ_RS04410 at 824.026 kb on - strand, within MMJJ_RS04410 at 824.069 kb on - strand, within MMJJ_RS04410 at 824.090 kb on - strand, within MMJJ_RS04410 at 824.118 kb on - strand, within MMJJ_RS04410 at 824.120 kb on - strand, within MMJJ_RS04410 at 824.121 kb on + strand, within MMJJ_RS04410 at 824.278 kb on - strand at 824.279 kb on + strand at 824.294 kb on - strand at 824.294 kb on - strand at 824.295 kb on + strand at 824.296 kb on - strand at 824.296 kb on - strand at 824.301 kb on - strand at 824.333 kb on - strand at 824.333 kb on - strand at 824.334 kb on + strand at 824.403 kb on + strand, within MMJJ_RS04415 at 824.445 kb on - strand, within MMJJ_RS04415 at 824.497 kb on + strand, within MMJJ_RS04415 at 824.497 kb on + strand, within MMJJ_RS04415 at 824.578 kb on - strand at 824.646 kb on - strand at 824.698 kb on + strand at 824.754 kb on - strand at 824.754 kb on - strand at 824.755 kb on + strand at 824.755 kb on + strand at 824.757 kb on - strand at 824.757 kb on - strand at 824.757 kb on - strand at 824.758 kb on + strand at 824.758 kb on + strand at 824.764 kb on - strand at 824.764 kb on - strand at 824.765 kb on + strand at 824.765 kb on + strand at 824.786 kb on + strand at 824.786 kb on + strand at 824.786 kb on + strand at 824.788 kb on - strand at 824.788 kb on - strand at 824.788 kb on - strand at 824.788 kb on - strand at 824.789 kb on + strand at 824.789 kb on + strand at 824.789 kb on + strand at 824.808 kb on - strand at 824.823 kb on + strand at 824.825 kb on - strand at 824.844 kb on + strand at 824.851 kb on - strand at 824.852 kb on + strand at 824.857 kb on - strand at 824.857 kb on - strand at 824.857 kb on - strand at 824.857 kb on - strand at 824.857 kb on - strand at 824.858 kb on + strand at 824.858 kb on + strand at 824.858 kb on + strand at 824.858 kb on + strand at 824.858 kb on + strand at 824.859 kb on - strand at 824.859 kb on - strand at 824.860 kb on + strand at 824.860 kb on + strand at 824.860 kb on + strand at 824.860 kb on + strand at 824.893 kb on + strand at 824.899 kb on + strand at 824.899 kb on + strand at 824.899 kb on + strand at 824.998 kb on - strand at 825.017 kb on + strand at 825.028 kb on - strand at 825.045 kb on - strand at 825.086 kb on - strand at 825.121 kb on - strand at 825.148 kb on + strand at 825.154 kb on - strand, within MMJJ_RS04420 at 825.154 kb on - strand, within MMJJ_RS04420 at 825.154 kb on - strand, within MMJJ_RS04420 at 825.155 kb on + strand, within MMJJ_RS04420 at 825.155 kb on + strand, within MMJJ_RS04420 at 825.155 kb on + strand, within MMJJ_RS04420 at 825.155 kb on + strand, within MMJJ_RS04420 at 825.156 kb on - strand, within MMJJ_RS04420 at 825.156 kb on - strand, within MMJJ_RS04420 at 825.156 kb on - strand, within MMJJ_RS04420 at 825.157 kb on + strand, within MMJJ_RS04420 at 825.157 kb on + strand, within MMJJ_RS04420 at 825.157 kb on + strand, within MMJJ_RS04420 at 825.182 kb on - strand, within MMJJ_RS04420 at 825.183 kb on + strand, within MMJJ_RS04420 at 825.183 kb on + strand, within MMJJ_RS04420 at 825.186 kb on - strand, within MMJJ_RS04420 at 825.187 kb on + strand, within MMJJ_RS04420 at 825.187 kb on + strand, within MMJJ_RS04420 at 825.187 kb on + strand, within MMJJ_RS04420 at 825.187 kb on + strand, within MMJJ_RS04420 at 825.189 kb on - strand, within MMJJ_RS04420 at 825.190 kb on + strand, within MMJJ_RS04420 at 825.192 kb on + strand, within MMJJ_RS04420 at 825.194 kb on - strand, within MMJJ_RS04420 at 825.194 kb on - strand, within MMJJ_RS04420 at 825.210 kb on + strand, within MMJJ_RS04420 at 825.212 kb on + strand, within MMJJ_RS04420 at 825.270 kb on + strand, within MMJJ_RS04420 at 825.270 kb on + strand, within MMJJ_RS04420 at 825.270 kb on + strand, within MMJJ_RS04420 at 825.281 kb on + strand, within MMJJ_RS04420 at 825.287 kb on - strand, within MMJJ_RS04420 at 825.300 kb on - strand, within MMJJ_RS04420 at 825.308 kb on - strand, within MMJJ_RS04420 at 825.317 kb on - strand, within MMJJ_RS04420 at 825.342 kb on + strand, within MMJJ_RS04420 at 825.372 kb on + strand, within MMJJ_RS04420 at 825.373 kb on - strand, within MMJJ_RS04420 at 825.373 kb on - strand, within MMJJ_RS04420 at 825.374 kb on + strand, within MMJJ_RS04420 at 825.374 kb on + strand, within MMJJ_RS04420 at 825.374 kb on + strand, within MMJJ_RS04420 at 825.374 kb on + strand, within MMJJ_RS04420 at 825.398 kb on - strand at 825.398 kb on - strand at 825.400 kb on - strand at 825.400 kb on - strand at 825.400 kb on - strand at 825.400 kb on - strand at 825.400 kb on - strand at 825.400 kb on - strand at 825.401 kb on + strand at 825.401 kb on + strand at 825.481 kb on + strand, within MMJJ_RS04425
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 823,368 - +3.7 823,393 + -0.4 823,417 + MMJJ_RS04405 0.14 +3.0 823,498 - MMJJ_RS04405 0.36 +4.4 823,498 - MMJJ_RS04405 0.36 -0.4 823,498 - MMJJ_RS04405 0.36 -1.9 823,504 - MMJJ_RS04405 0.37 +0.6 823,504 - MMJJ_RS04405 0.37 -0.6 823,504 - MMJJ_RS04405 0.37 +0.9 823,504 - MMJJ_RS04405 0.37 +0.2 823,504 - MMJJ_RS04405 0.37 +1.1 823,504 - MMJJ_RS04405 0.37 -1.4 823,505 + MMJJ_RS04405 0.37 +2.9 823,505 + MMJJ_RS04405 0.37 +3.5 823,505 + MMJJ_RS04405 0.37 -2.8 823,515 + MMJJ_RS04405 0.40 -0.6 823,515 + MMJJ_RS04405 0.40 +1.5 823,535 - MMJJ_RS04405 0.46 -2.4 823,535 - MMJJ_RS04405 0.46 +0.8 823,567 - MMJJ_RS04405 0.54 +1.9 823,572 + MMJJ_RS04405 0.56 +0.2 823,595 - MMJJ_RS04405 0.62 -1.7 823,595 - MMJJ_RS04405 0.62 -0.4 823,596 + MMJJ_RS04405 0.62 +2.3 823,608 + MMJJ_RS04405 0.65 -1.9 823,712 - +1.3 823,712 - -1.5 823,712 - +1.1 823,713 + +0.9 823,713 + -3.0 823,787 + +0.9 823,788 - +0.5 823,801 - -1.3 823,850 + +3.9 823,853 - +0.5 823,853 - +3.9 823,903 - MMJJ_RS04410 0.20 +0.6 824,026 - MMJJ_RS04410 0.50 -0.2 824,026 - MMJJ_RS04410 0.50 +2.2 824,069 - MMJJ_RS04410 0.61 +2.2 824,090 - MMJJ_RS04410 0.66 -0.1 824,118 - MMJJ_RS04410 0.73 +1.0 824,120 - MMJJ_RS04410 0.73 +0.0 824,121 + MMJJ_RS04410 0.73 -0.5 824,278 - -2.5 824,279 + -0.2 824,294 - -2.7 824,294 - -0.8 824,295 + -2.9 824,296 - +1.3 824,296 - -2.8 824,301 - -1.2 824,333 - +0.7 824,333 - +4.4 824,334 + -2.4 824,403 + MMJJ_RS04415 0.24 +1.3 824,445 - MMJJ_RS04415 0.46 +2.8 824,497 + MMJJ_RS04415 0.72 +5.0 824,497 + MMJJ_RS04415 0.72 +1.5 824,578 - +0.3 824,646 - -1.6 824,698 + +2.9 824,754 - -0.4 824,754 - -1.6 824,755 + +0.6 824,755 + +2.6 824,757 - -1.1 824,757 - +1.2 824,757 - -2.7 824,758 + -4.2 824,758 + -4.4 824,764 - +3.1 824,764 - +1.6 824,765 + +1.4 824,765 + -1.6 824,786 + +4.3 824,786 + +2.5 824,786 + -2.1 824,788 - +0.8 824,788 - +1.6 824,788 - -0.2 824,788 - -3.5 824,789 + -0.3 824,789 + +2.3 824,789 + -2.1 824,808 - -0.3 824,823 + -0.2 824,825 - +0.9 824,844 + +3.4 824,851 - +1.0 824,852 + -1.6 824,857 - -0.4 824,857 - -1.2 824,857 - +4.9 824,857 - -2.7 824,857 - +0.4 824,858 + -1.0 824,858 + -1.6 824,858 + -0.3 824,858 + -1.6 824,858 + +0.8 824,859 - -0.6 824,859 - -1.3 824,860 + -1.1 824,860 + +3.3 824,860 + -1.5 824,860 + +0.4 824,893 + +1.2 824,899 + -3.4 824,899 + +0.4 824,899 + +3.0 824,998 - -0.6 825,017 + +2.6 825,028 - +1.8 825,045 - -2.2 825,086 - +1.0 825,121 - +0.5 825,148 + -2.3 825,154 - MMJJ_RS04420 0.12 -0.9 825,154 - MMJJ_RS04420 0.12 -0.3 825,154 - MMJJ_RS04420 0.12 +0.6 825,155 + MMJJ_RS04420 0.12 +0.2 825,155 + MMJJ_RS04420 0.12 -0.8 825,155 + MMJJ_RS04420 0.12 -2.1 825,155 + MMJJ_RS04420 0.12 -1.4 825,156 - MMJJ_RS04420 0.12 -3.4 825,156 - MMJJ_RS04420 0.12 +2.2 825,156 - MMJJ_RS04420 0.12 +2.8 825,157 + MMJJ_RS04420 0.13 +0.5 825,157 + MMJJ_RS04420 0.13 +3.7 825,157 + MMJJ_RS04420 0.13 -0.6 825,182 - MMJJ_RS04420 0.22 +0.8 825,183 + MMJJ_RS04420 0.22 +4.5 825,183 + MMJJ_RS04420 0.22 -0.9 825,186 - MMJJ_RS04420 0.23 +0.3 825,187 + MMJJ_RS04420 0.23 +2.2 825,187 + MMJJ_RS04420 0.23 +2.9 825,187 + MMJJ_RS04420 0.23 +1.2 825,187 + MMJJ_RS04420 0.23 -1.3 825,189 - MMJJ_RS04420 0.24 +2.4 825,190 + MMJJ_RS04420 0.24 -1.5 825,192 + MMJJ_RS04420 0.25 -1.2 825,194 - MMJJ_RS04420 0.26 +4.0 825,194 - MMJJ_RS04420 0.26 -2.0 825,210 + MMJJ_RS04420 0.31 +0.9 825,212 + MMJJ_RS04420 0.32 -1.4 825,270 + MMJJ_RS04420 0.52 +1.5 825,270 + MMJJ_RS04420 0.52 -0.8 825,270 + MMJJ_RS04420 0.52 -0.7 825,281 + MMJJ_RS04420 0.56 +1.0 825,287 - MMJJ_RS04420 0.58 -2.5 825,300 - MMJJ_RS04420 0.62 -0.7 825,308 - MMJJ_RS04420 0.65 -0.2 825,317 - MMJJ_RS04420 0.68 -0.8 825,342 + MMJJ_RS04420 0.77 -0.2 825,372 + MMJJ_RS04420 0.88 -2.5 825,373 - MMJJ_RS04420 0.88 -2.5 825,373 - MMJJ_RS04420 0.88 +3.3 825,374 + MMJJ_RS04420 0.88 +0.9 825,374 + MMJJ_RS04420 0.88 -1.6 825,374 + MMJJ_RS04420 0.88 +0.5 825,374 + MMJJ_RS04420 0.88 -1.7 825,398 - -1.1 825,398 - +1.5 825,400 - -1.1 825,400 - -1.4 825,400 - -0.5 825,400 - -0.1 825,400 - -1.8 825,400 - +0.3 825,401 + -1.2 825,401 + +2.2 825,481 + MMJJ_RS04425 0.36 -1.1
Or see this region's nucleotide sequence