Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04335 and MMJJ_RS04340 are separated by 12 nucleotides MMJJ_RS04340 and MMJJ_RS04345 are separated by 1 nucleotides MMJJ_RS04345 and MMJJ_RS04350 overlap by 8 nucleotides MMJJ_RS04350 and MMJJ_RS09405 are separated by 18 nucleotides
MMJJ_RS04335: MMJJ_RS04335 - minichromosome maintenance protein MCM, at 809,188 to 811,212
_RS04335
MMJJ_RS04340: MMJJ_RS04340 - hypothetical protein, at 811,225 to 811,440
_RS04340
MMJJ_RS04345: MMJJ_RS04345 - DUF2080 family transposase-associated protein, at 811,442 to 811,666
_RS04345
MMJJ_RS04350: MMJJ_RS04350 - hypothetical protein, at 811,659 to 812,162
_RS04350
MMJJ_RS09405: MMJJ_RS09405 - hypothetical protein, at 812,181 to 812,360
_RS09405
Position (kb) 811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 810.457 kb on - strand, within MMJJ_RS04335 at 810.457 kb on - strand, within MMJJ_RS04335 at 810.457 kb on - strand, within MMJJ_RS04335 at 810.458 kb on + strand, within MMJJ_RS04335 at 810.604 kb on - strand, within MMJJ_RS04335 at 810.604 kb on - strand, within MMJJ_RS04335 at 810.682 kb on - strand, within MMJJ_RS04335 at 810.682 kb on - strand, within MMJJ_RS04335 at 810.682 kb on - strand, within MMJJ_RS04335 at 810.682 kb on - strand, within MMJJ_RS04335 at 810.683 kb on + strand, within MMJJ_RS04335 at 810.683 kb on + strand, within MMJJ_RS04335 at 810.683 kb on + strand, within MMJJ_RS04335 at 810.683 kb on + strand, within MMJJ_RS04335 at 810.686 kb on - strand, within MMJJ_RS04335 at 810.686 kb on - strand, within MMJJ_RS04335 at 810.687 kb on + strand, within MMJJ_RS04335 at 810.714 kb on - strand, within MMJJ_RS04335 at 810.715 kb on + strand, within MMJJ_RS04335 at 810.810 kb on + strand, within MMJJ_RS04335 at 810.810 kb on + strand, within MMJJ_RS04335 at 810.856 kb on - strand, within MMJJ_RS04335 at 810.856 kb on - strand, within MMJJ_RS04335 at 810.857 kb on + strand, within MMJJ_RS04335 at 811.016 kb on - strand at 811.065 kb on + strand at 811.136 kb on + strand at 811.186 kb on - strand at 811.276 kb on + strand, within MMJJ_RS04340 at 811.300 kb on - strand, within MMJJ_RS04340 at 811.300 kb on - strand, within MMJJ_RS04340 at 811.301 kb on + strand, within MMJJ_RS04340 at 811.321 kb on + strand, within MMJJ_RS04340 at 811.333 kb on + strand, within MMJJ_RS04340 at 811.407 kb on - strand, within MMJJ_RS04340 at 811.571 kb on - strand, within MMJJ_RS04345 at 811.582 kb on - strand, within MMJJ_RS04345 at 811.582 kb on - strand, within MMJJ_RS04345 at 811.583 kb on + strand, within MMJJ_RS04345 at 811.583 kb on + strand, within MMJJ_RS04345 at 811.635 kb on + strand, within MMJJ_RS04345 at 811.655 kb on - strand at 811.656 kb on + strand at 811.788 kb on - strand, within MMJJ_RS04350 at 811.789 kb on + strand, within MMJJ_RS04350 at 811.789 kb on + strand, within MMJJ_RS04350 at 811.932 kb on + strand, within MMJJ_RS04350 at 811.932 kb on + strand, within MMJJ_RS04350 at 811.965 kb on - strand, within MMJJ_RS04350 at 811.966 kb on + strand, within MMJJ_RS04350 at 811.966 kb on + strand, within MMJJ_RS04350 at 812.059 kb on - strand, within MMJJ_RS04350 at 812.076 kb on - strand, within MMJJ_RS04350 at 812.076 kb on - strand, within MMJJ_RS04350 at 812.089 kb on + strand, within MMJJ_RS04350 at 812.124 kb on + strand at 812.127 kb on - strand at 812.127 kb on - strand at 812.128 kb on + strand at 812.163 kb on + strand at 812.180 kb on + strand at 812.183 kb on + strand at 812.203 kb on + strand, within MMJJ_RS09405 at 812.221 kb on + strand, within MMJJ_RS09405 at 812.279 kb on - strand, within MMJJ_RS09405 at 812.280 kb on + strand, within MMJJ_RS09405 at 812.313 kb on - strand, within MMJJ_RS09405 at 812.314 kb on + strand, within MMJJ_RS09405 at 812.314 kb on + strand, within MMJJ_RS09405 at 812.354 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 810,457 - MMJJ_RS04335 0.63 -1.7 810,457 - MMJJ_RS04335 0.63 +0.4 810,457 - MMJJ_RS04335 0.63 -0.7 810,458 + MMJJ_RS04335 0.63 +2.0 810,604 - MMJJ_RS04335 0.70 -1.9 810,604 - MMJJ_RS04335 0.70 -1.6 810,682 - MMJJ_RS04335 0.74 +0.2 810,682 - MMJJ_RS04335 0.74 +4.5 810,682 - MMJJ_RS04335 0.74 +1.2 810,682 - MMJJ_RS04335 0.74 -1.1 810,683 + MMJJ_RS04335 0.74 +0.4 810,683 + MMJJ_RS04335 0.74 +0.6 810,683 + MMJJ_RS04335 0.74 -2.1 810,683 + MMJJ_RS04335 0.74 -0.6 810,686 - MMJJ_RS04335 0.74 -2.9 810,686 - MMJJ_RS04335 0.74 +0.7 810,687 + MMJJ_RS04335 0.74 -0.0 810,714 - MMJJ_RS04335 0.75 -0.7 810,715 + MMJJ_RS04335 0.75 -1.4 810,810 + MMJJ_RS04335 0.80 +0.8 810,810 + MMJJ_RS04335 0.80 -2.9 810,856 - MMJJ_RS04335 0.82 +0.6 810,856 - MMJJ_RS04335 0.82 -1.8 810,857 + MMJJ_RS04335 0.82 +0.2 811,016 - +0.9 811,065 + +1.8 811,136 + -0.8 811,186 - -0.6 811,276 + MMJJ_RS04340 0.24 +3.3 811,300 - MMJJ_RS04340 0.35 -1.3 811,300 - MMJJ_RS04340 0.35 -0.0 811,301 + MMJJ_RS04340 0.35 -2.8 811,321 + MMJJ_RS04340 0.44 -0.6 811,333 + MMJJ_RS04340 0.50 -0.7 811,407 - MMJJ_RS04340 0.84 -3.1 811,571 - MMJJ_RS04345 0.57 +0.5 811,582 - MMJJ_RS04345 0.62 +1.4 811,582 - MMJJ_RS04345 0.62 +3.8 811,583 + MMJJ_RS04345 0.63 +0.7 811,583 + MMJJ_RS04345 0.63 -0.6 811,635 + MMJJ_RS04345 0.86 +1.1 811,655 - -2.0 811,656 + +0.8 811,788 - MMJJ_RS04350 0.26 +2.8 811,789 + MMJJ_RS04350 0.26 +1.6 811,789 + MMJJ_RS04350 0.26 +0.1 811,932 + MMJJ_RS04350 0.54 +5.3 811,932 + MMJJ_RS04350 0.54 +2.3 811,965 - MMJJ_RS04350 0.61 -2.1 811,966 + MMJJ_RS04350 0.61 -0.3 811,966 + MMJJ_RS04350 0.61 +0.9 812,059 - MMJJ_RS04350 0.79 -0.9 812,076 - MMJJ_RS04350 0.83 -1.2 812,076 - MMJJ_RS04350 0.83 +3.4 812,089 + MMJJ_RS04350 0.85 -1.0 812,124 + +0.7 812,127 - +2.0 812,127 - +1.4 812,128 + +2.6 812,163 + -1.3 812,180 + -0.2 812,183 + -0.2 812,203 + MMJJ_RS09405 0.12 -1.1 812,221 + MMJJ_RS09405 0.22 -0.8 812,279 - MMJJ_RS09405 0.54 +0.0 812,280 + MMJJ_RS09405 0.55 -0.4 812,313 - MMJJ_RS09405 0.73 +5.1 812,314 + MMJJ_RS09405 0.74 -1.8 812,314 + MMJJ_RS09405 0.74 -0.2 812,354 + -1.0
Or see this region's nucleotide sequence