Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04325 and MMJJ_RS04330 overlap by 20 nucleotides MMJJ_RS04330 and MMJJ_RS04335 are separated by 1 nucleotides MMJJ_RS04335 and MMJJ_RS04340 are separated by 12 nucleotides MMJJ_RS04340 and MMJJ_RS04345 are separated by 1 nucleotides MMJJ_RS04345 and MMJJ_RS04350 overlap by 8 nucleotides MMJJ_RS04350 and MMJJ_RS09405 are separated by 18 nucleotides
MMJJ_RS04325: MMJJ_RS04325 - tyrosine-type recombinase/integrase, at 807,960 to 808,928
_RS04325
MMJJ_RS04330: MMJJ_RS04330 - DUF2540 domain-containing protein, at 808,909 to 809,186
_RS04330
MMJJ_RS04335: MMJJ_RS04335 - minichromosome maintenance protein MCM, at 809,188 to 811,212
_RS04335
MMJJ_RS04340: MMJJ_RS04340 - hypothetical protein, at 811,225 to 811,440
_RS04340
MMJJ_RS04345: MMJJ_RS04345 - DUF2080 family transposase-associated protein, at 811,442 to 811,666
_RS04345
MMJJ_RS04350: MMJJ_RS04350 - hypothetical protein, at 811,659 to 812,162
_RS04350
MMJJ_RS09405: MMJJ_RS09405 - hypothetical protein, at 812,181 to 812,360
_RS09405
Position (kb) 809
810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 808.200 kb on - strand, within MMJJ_RS04325 at 808.274 kb on + strand, within MMJJ_RS04325 at 808.281 kb on + strand, within MMJJ_RS04325 at 808.290 kb on - strand, within MMJJ_RS04325 at 808.347 kb on + strand, within MMJJ_RS04325 at 808.352 kb on - strand, within MMJJ_RS04325 at 808.374 kb on + strand, within MMJJ_RS04325 at 808.374 kb on + strand, within MMJJ_RS04325 at 808.450 kb on + strand, within MMJJ_RS04325 at 808.462 kb on + strand, within MMJJ_RS04325 at 808.462 kb on + strand, within MMJJ_RS04325 at 808.462 kb on + strand, within MMJJ_RS04325 at 808.490 kb on - strand, within MMJJ_RS04325 at 808.491 kb on + strand, within MMJJ_RS04325 at 808.500 kb on - strand, within MMJJ_RS04325 at 808.500 kb on - strand, within MMJJ_RS04325 at 808.500 kb on - strand, within MMJJ_RS04325 at 808.524 kb on - strand, within MMJJ_RS04325 at 808.525 kb on + strand, within MMJJ_RS04325 at 808.526 kb on - strand, within MMJJ_RS04325 at 808.527 kb on + strand, within MMJJ_RS04325 at 808.542 kb on - strand, within MMJJ_RS04325 at 808.620 kb on + strand, within MMJJ_RS04325 at 808.690 kb on - strand, within MMJJ_RS04325 at 808.704 kb on - strand, within MMJJ_RS04325 at 808.902 kb on - strand at 808.911 kb on + strand at 808.962 kb on - strand, within MMJJ_RS04330 at 808.962 kb on - strand, within MMJJ_RS04330 at 808.963 kb on + strand, within MMJJ_RS04330 at 808.966 kb on + strand, within MMJJ_RS04330 at 808.969 kb on - strand, within MMJJ_RS04330 at 808.969 kb on - strand at 808.970 kb on + strand, within MMJJ_RS04330 at 808.970 kb on + strand, within MMJJ_RS04330 at 808.970 kb on + strand, within MMJJ_RS04330 at 808.974 kb on - strand, within MMJJ_RS04330 at 809.094 kb on - strand, within MMJJ_RS04330 at 809.094 kb on - strand, within MMJJ_RS04330 at 809.094 kb on - strand, within MMJJ_RS04330 at 809.094 kb on - strand, within MMJJ_RS04330 at 809.094 kb on - strand, within MMJJ_RS04330 at 809.094 kb on - strand, within MMJJ_RS04330 at 809.094 kb on - strand, within MMJJ_RS04330 at 809.095 kb on + strand, within MMJJ_RS04330 at 809.095 kb on + strand, within MMJJ_RS04330 at 809.095 kb on + strand, within MMJJ_RS04330 at 809.095 kb on + strand, within MMJJ_RS04330 at 809.095 kb on + strand, within MMJJ_RS04330 at 809.095 kb on + strand, within MMJJ_RS04330 at 809.095 kb on + strand, within MMJJ_RS04330 at 809.095 kb on - strand, within MMJJ_RS04330 at 809.098 kb on - strand, within MMJJ_RS04330 at 809.098 kb on - strand, within MMJJ_RS04330 at 809.098 kb on - strand, within MMJJ_RS04330 at 809.098 kb on - strand, within MMJJ_RS04330 at 809.099 kb on + strand, within MMJJ_RS04330 at 809.099 kb on + strand, within MMJJ_RS04330 at 809.125 kb on - strand, within MMJJ_RS04330 at 809.126 kb on + strand, within MMJJ_RS04330 at 809.126 kb on + strand, within MMJJ_RS04330 at 809.126 kb on + strand, within MMJJ_RS04330 at 809.126 kb on + strand, within MMJJ_RS04330 at 809.126 kb on + strand, within MMJJ_RS04330 at 809.129 kb on + strand, within MMJJ_RS04330 at 809.159 kb on - strand at 809.160 kb on + strand at 809.167 kb on + strand at 809.167 kb on + strand at 809.261 kb on + strand at 809.267 kb on + strand at 809.287 kb on + strand at 809.330 kb on + strand at 809.362 kb on - strand at 809.362 kb on - strand at 809.364 kb on - strand at 809.367 kb on - strand at 809.373 kb on + strand at 809.384 kb on + strand at 809.468 kb on + strand, within MMJJ_RS04335 at 809.486 kb on - strand, within MMJJ_RS04335 at 809.486 kb on - strand, within MMJJ_RS04335 at 809.487 kb on + strand, within MMJJ_RS04335 at 809.487 kb on + strand, within MMJJ_RS04335 at 809.518 kb on - strand, within MMJJ_RS04335 at 809.608 kb on - strand, within MMJJ_RS04335 at 809.619 kb on + strand, within MMJJ_RS04335 at 809.632 kb on - strand, within MMJJ_RS04335 at 809.640 kb on - strand, within MMJJ_RS04335 at 809.679 kb on + strand, within MMJJ_RS04335 at 809.679 kb on + strand, within MMJJ_RS04335 at 809.688 kb on + strand, within MMJJ_RS04335 at 809.717 kb on + strand, within MMJJ_RS04335 at 809.774 kb on - strand, within MMJJ_RS04335 at 809.797 kb on + strand, within MMJJ_RS04335 at 809.873 kb on + strand, within MMJJ_RS04335 at 809.940 kb on - strand, within MMJJ_RS04335 at 810.004 kb on - strand, within MMJJ_RS04335 at 810.005 kb on + strand, within MMJJ_RS04335 at 810.005 kb on + strand, within MMJJ_RS04335 at 810.005 kb on + strand, within MMJJ_RS04335 at 810.033 kb on - strand, within MMJJ_RS04335 at 810.035 kb on - strand, within MMJJ_RS04335 at 810.035 kb on - strand, within MMJJ_RS04335 at 810.035 kb on - strand, within MMJJ_RS04335 at 810.036 kb on + strand, within MMJJ_RS04335 at 810.097 kb on - strand, within MMJJ_RS04335 at 810.098 kb on + strand, within MMJJ_RS04335 at 810.103 kb on - strand, within MMJJ_RS04335 at 810.104 kb on + strand, within MMJJ_RS04335 at 810.115 kb on - strand, within MMJJ_RS04335 at 810.115 kb on - strand, within MMJJ_RS04335 at 810.115 kb on - strand, within MMJJ_RS04335 at 810.116 kb on + strand, within MMJJ_RS04335 at 810.126 kb on - strand, within MMJJ_RS04335 at 810.203 kb on - strand, within MMJJ_RS04335 at 810.457 kb on - strand, within MMJJ_RS04335 at 810.457 kb on - strand, within MMJJ_RS04335 at 810.457 kb on - strand, within MMJJ_RS04335 at 810.458 kb on + strand, within MMJJ_RS04335 at 810.604 kb on - strand, within MMJJ_RS04335 at 810.604 kb on - strand, within MMJJ_RS04335 at 810.682 kb on - strand, within MMJJ_RS04335 at 810.682 kb on - strand, within MMJJ_RS04335 at 810.682 kb on - strand, within MMJJ_RS04335 at 810.682 kb on - strand, within MMJJ_RS04335 at 810.683 kb on + strand, within MMJJ_RS04335 at 810.683 kb on + strand, within MMJJ_RS04335 at 810.683 kb on + strand, within MMJJ_RS04335 at 810.683 kb on + strand, within MMJJ_RS04335 at 810.686 kb on - strand, within MMJJ_RS04335 at 810.686 kb on - strand, within MMJJ_RS04335 at 810.687 kb on + strand, within MMJJ_RS04335 at 810.714 kb on - strand, within MMJJ_RS04335 at 810.715 kb on + strand, within MMJJ_RS04335 at 810.810 kb on + strand, within MMJJ_RS04335 at 810.810 kb on + strand, within MMJJ_RS04335 at 810.856 kb on - strand, within MMJJ_RS04335 at 810.856 kb on - strand, within MMJJ_RS04335 at 810.857 kb on + strand, within MMJJ_RS04335 at 811.016 kb on - strand at 811.065 kb on + strand at 811.136 kb on + strand at 811.186 kb on - strand at 811.276 kb on + strand, within MMJJ_RS04340 at 811.300 kb on - strand, within MMJJ_RS04340 at 811.300 kb on - strand, within MMJJ_RS04340 at 811.301 kb on + strand, within MMJJ_RS04340 at 811.321 kb on + strand, within MMJJ_RS04340 at 811.333 kb on + strand, within MMJJ_RS04340 at 811.407 kb on - strand, within MMJJ_RS04340 at 811.571 kb on - strand, within MMJJ_RS04345 at 811.582 kb on - strand, within MMJJ_RS04345 at 811.582 kb on - strand, within MMJJ_RS04345 at 811.583 kb on + strand, within MMJJ_RS04345 at 811.583 kb on + strand, within MMJJ_RS04345 at 811.635 kb on + strand, within MMJJ_RS04345 at 811.655 kb on - strand at 811.656 kb on + strand at 811.788 kb on - strand, within MMJJ_RS04350 at 811.789 kb on + strand, within MMJJ_RS04350 at 811.789 kb on + strand, within MMJJ_RS04350 at 811.932 kb on + strand, within MMJJ_RS04350 at 811.932 kb on + strand, within MMJJ_RS04350 at 811.965 kb on - strand, within MMJJ_RS04350 at 811.966 kb on + strand, within MMJJ_RS04350 at 811.966 kb on + strand, within MMJJ_RS04350 at 812.059 kb on - strand, within MMJJ_RS04350 at 812.076 kb on - strand, within MMJJ_RS04350 at 812.076 kb on - strand, within MMJJ_RS04350 at 812.089 kb on + strand, within MMJJ_RS04350 at 812.124 kb on + strand at 812.127 kb on - strand at 812.127 kb on - strand at 812.128 kb on + strand at 812.163 kb on + strand at 812.180 kb on + strand at 812.183 kb on + strand at 812.203 kb on + strand, within MMJJ_RS09405
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 808,200 - MMJJ_RS04325 0.25 +2.7 808,274 + MMJJ_RS04325 0.32 -1.2 808,281 + MMJJ_RS04325 0.33 +1.6 808,290 - MMJJ_RS04325 0.34 +0.8 808,347 + MMJJ_RS04325 0.40 -0.3 808,352 - MMJJ_RS04325 0.40 +0.2 808,374 + MMJJ_RS04325 0.43 +0.6 808,374 + MMJJ_RS04325 0.43 -1.4 808,450 + MMJJ_RS04325 0.51 +0.8 808,462 + MMJJ_RS04325 0.52 -1.1 808,462 + MMJJ_RS04325 0.52 -0.7 808,462 + MMJJ_RS04325 0.52 +2.5 808,490 - MMJJ_RS04325 0.55 +3.1 808,491 + MMJJ_RS04325 0.55 +2.6 808,500 - MMJJ_RS04325 0.56 +0.2 808,500 - MMJJ_RS04325 0.56 +1.1 808,500 - MMJJ_RS04325 0.56 +0.0 808,524 - MMJJ_RS04325 0.58 +2.7 808,525 + MMJJ_RS04325 0.58 +2.9 808,526 - MMJJ_RS04325 0.58 -1.8 808,527 + MMJJ_RS04325 0.59 -0.2 808,542 - MMJJ_RS04325 0.60 -3.2 808,620 + MMJJ_RS04325 0.68 -3.5 808,690 - MMJJ_RS04325 0.75 +0.4 808,704 - MMJJ_RS04325 0.77 +1.0 808,902 - -0.1 808,911 + -3.6 808,962 - MMJJ_RS04330 0.19 -1.7 808,962 - MMJJ_RS04330 0.19 -0.9 808,963 + MMJJ_RS04330 0.19 -1.2 808,966 + MMJJ_RS04330 0.21 -1.0 808,969 - MMJJ_RS04330 0.22 -1.2 808,969 - +0.4 808,970 + MMJJ_RS04330 0.22 +1.3 808,970 + MMJJ_RS04330 0.22 -0.2 808,970 + MMJJ_RS04330 0.22 -1.7 808,974 - MMJJ_RS04330 0.23 +2.3 809,094 - MMJJ_RS04330 0.67 -2.1 809,094 - MMJJ_RS04330 0.67 -3.4 809,094 - MMJJ_RS04330 0.67 +0.5 809,094 - MMJJ_RS04330 0.67 -2.1 809,094 - MMJJ_RS04330 0.67 +0.9 809,094 - MMJJ_RS04330 0.67 -1.2 809,094 - MMJJ_RS04330 0.67 +2.1 809,095 + MMJJ_RS04330 0.67 +0.9 809,095 + MMJJ_RS04330 0.67 -0.9 809,095 + MMJJ_RS04330 0.67 +1.2 809,095 + MMJJ_RS04330 0.67 +2.3 809,095 + MMJJ_RS04330 0.67 +1.9 809,095 + MMJJ_RS04330 0.67 -2.4 809,095 + MMJJ_RS04330 0.67 +0.5 809,095 - MMJJ_RS04330 0.67 +1.0 809,098 - MMJJ_RS04330 0.68 +4.6 809,098 - MMJJ_RS04330 0.68 -0.9 809,098 - MMJJ_RS04330 0.68 -1.3 809,098 - MMJJ_RS04330 0.68 -0.6 809,099 + MMJJ_RS04330 0.68 +3.5 809,099 + MMJJ_RS04330 0.68 +1.8 809,125 - MMJJ_RS04330 0.78 -0.0 809,126 + MMJJ_RS04330 0.78 +1.1 809,126 + MMJJ_RS04330 0.78 -2.3 809,126 + MMJJ_RS04330 0.78 -2.2 809,126 + MMJJ_RS04330 0.78 -1.2 809,126 + MMJJ_RS04330 0.78 -0.6 809,129 + MMJJ_RS04330 0.79 -0.6 809,159 - +0.6 809,160 + -0.5 809,167 + -1.6 809,167 + -0.9 809,261 + +0.0 809,267 + -0.9 809,287 + +0.3 809,330 + +0.5 809,362 - +0.3 809,362 - +3.9 809,364 - -0.6 809,367 - -1.5 809,373 + +0.4 809,384 + +1.6 809,468 + MMJJ_RS04335 0.14 +0.1 809,486 - MMJJ_RS04335 0.15 -0.5 809,486 - MMJJ_RS04335 0.15 +1.6 809,487 + MMJJ_RS04335 0.15 +0.1 809,487 + MMJJ_RS04335 0.15 +2.0 809,518 - MMJJ_RS04335 0.16 +0.5 809,608 - MMJJ_RS04335 0.21 +0.2 809,619 + MMJJ_RS04335 0.21 +0.2 809,632 - MMJJ_RS04335 0.22 -0.2 809,640 - MMJJ_RS04335 0.22 +0.7 809,679 + MMJJ_RS04335 0.24 -1.7 809,679 + MMJJ_RS04335 0.24 -1.2 809,688 + MMJJ_RS04335 0.25 +1.2 809,717 + MMJJ_RS04335 0.26 -2.1 809,774 - MMJJ_RS04335 0.29 +1.1 809,797 + MMJJ_RS04335 0.30 +0.5 809,873 + MMJJ_RS04335 0.34 +1.4 809,940 - MMJJ_RS04335 0.37 -1.9 810,004 - MMJJ_RS04335 0.40 -2.0 810,005 + MMJJ_RS04335 0.40 +0.8 810,005 + MMJJ_RS04335 0.40 +2.3 810,005 + MMJJ_RS04335 0.40 +0.5 810,033 - MMJJ_RS04335 0.42 +0.8 810,035 - MMJJ_RS04335 0.42 -2.2 810,035 - MMJJ_RS04335 0.42 +4.2 810,035 - MMJJ_RS04335 0.42 +0.4 810,036 + MMJJ_RS04335 0.42 -0.7 810,097 - MMJJ_RS04335 0.45 +0.0 810,098 + MMJJ_RS04335 0.45 -1.2 810,103 - MMJJ_RS04335 0.45 -1.7 810,104 + MMJJ_RS04335 0.45 +2.1 810,115 - MMJJ_RS04335 0.46 -0.2 810,115 - MMJJ_RS04335 0.46 +1.4 810,115 - MMJJ_RS04335 0.46 -1.3 810,116 + MMJJ_RS04335 0.46 +1.8 810,126 - MMJJ_RS04335 0.46 -0.3 810,203 - MMJJ_RS04335 0.50 -2.9 810,457 - MMJJ_RS04335 0.63 -1.7 810,457 - MMJJ_RS04335 0.63 +0.4 810,457 - MMJJ_RS04335 0.63 -0.7 810,458 + MMJJ_RS04335 0.63 +2.0 810,604 - MMJJ_RS04335 0.70 -1.9 810,604 - MMJJ_RS04335 0.70 -1.6 810,682 - MMJJ_RS04335 0.74 +0.2 810,682 - MMJJ_RS04335 0.74 +4.5 810,682 - MMJJ_RS04335 0.74 +1.2 810,682 - MMJJ_RS04335 0.74 -1.1 810,683 + MMJJ_RS04335 0.74 +0.4 810,683 + MMJJ_RS04335 0.74 +0.6 810,683 + MMJJ_RS04335 0.74 -2.1 810,683 + MMJJ_RS04335 0.74 -0.6 810,686 - MMJJ_RS04335 0.74 -2.9 810,686 - MMJJ_RS04335 0.74 +0.7 810,687 + MMJJ_RS04335 0.74 -0.0 810,714 - MMJJ_RS04335 0.75 -0.7 810,715 + MMJJ_RS04335 0.75 -1.4 810,810 + MMJJ_RS04335 0.80 +0.8 810,810 + MMJJ_RS04335 0.80 -2.9 810,856 - MMJJ_RS04335 0.82 +0.6 810,856 - MMJJ_RS04335 0.82 -1.8 810,857 + MMJJ_RS04335 0.82 +0.2 811,016 - +0.9 811,065 + +1.8 811,136 + -0.8 811,186 - -0.6 811,276 + MMJJ_RS04340 0.24 +3.3 811,300 - MMJJ_RS04340 0.35 -1.3 811,300 - MMJJ_RS04340 0.35 -0.0 811,301 + MMJJ_RS04340 0.35 -2.8 811,321 + MMJJ_RS04340 0.44 -0.6 811,333 + MMJJ_RS04340 0.50 -0.7 811,407 - MMJJ_RS04340 0.84 -3.1 811,571 - MMJJ_RS04345 0.57 +0.5 811,582 - MMJJ_RS04345 0.62 +1.4 811,582 - MMJJ_RS04345 0.62 +3.8 811,583 + MMJJ_RS04345 0.63 +0.7 811,583 + MMJJ_RS04345 0.63 -0.6 811,635 + MMJJ_RS04345 0.86 +1.1 811,655 - -2.0 811,656 + +0.8 811,788 - MMJJ_RS04350 0.26 +2.8 811,789 + MMJJ_RS04350 0.26 +1.6 811,789 + MMJJ_RS04350 0.26 +0.1 811,932 + MMJJ_RS04350 0.54 +5.3 811,932 + MMJJ_RS04350 0.54 +2.3 811,965 - MMJJ_RS04350 0.61 -2.1 811,966 + MMJJ_RS04350 0.61 -0.3 811,966 + MMJJ_RS04350 0.61 +0.9 812,059 - MMJJ_RS04350 0.79 -0.9 812,076 - MMJJ_RS04350 0.83 -1.2 812,076 - MMJJ_RS04350 0.83 +3.4 812,089 + MMJJ_RS04350 0.85 -1.0 812,124 + +0.7 812,127 - +2.0 812,127 - +1.4 812,128 + +2.6 812,163 + -1.3 812,180 + -0.2 812,183 + -0.2 812,203 + MMJJ_RS09405 0.12 -1.1
Or see this region's nucleotide sequence