Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04265

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04260 and MMJJ_RS04265 are separated by 26 nucleotidesMMJJ_RS04265 and MMJJ_RS04270 are separated by 17 nucleotidesMMJJ_RS04270 and MMJJ_RS04275 are separated by 29 nucleotides MMJJ_RS04260: MMJJ_RS04260 - molybdopterin molybdotransferase MoeA, at 793,458 to 794,585 _RS04260 MMJJ_RS04265: MMJJ_RS04265 - FmdE family protein, at 794,612 to 795,196 _RS04265 MMJJ_RS04270: MMJJ_RS04270 - DUF364 domain-containing protein, at 795,214 to 795,990 _RS04270 MMJJ_RS04275: MMJJ_RS04275 - ABC transporter ATP-binding protein, at 796,020 to 796,802 _RS04275 Position (kb) 794 795 796Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 793.725 kb on - strand, within MMJJ_RS04260at 793.725 kb on - strand, within MMJJ_RS04260at 793.758 kb on - strand, within MMJJ_RS04260at 793.758 kb on - strand, within MMJJ_RS04260at 793.758 kb on - strand, within MMJJ_RS04260at 793.759 kb on + strandat 793.759 kb on + strand, within MMJJ_RS04260at 793.759 kb on + strand, within MMJJ_RS04260at 793.759 kb on + strand, within MMJJ_RS04260at 793.759 kb on + strand, within MMJJ_RS04260at 793.761 kb on - strand, within MMJJ_RS04260at 793.762 kb on + strand, within MMJJ_RS04260at 793.762 kb on + strand, within MMJJ_RS04260at 793.791 kb on - strand, within MMJJ_RS04260at 793.815 kb on - strand, within MMJJ_RS04260at 793.815 kb on - strand, within MMJJ_RS04260at 793.849 kb on + strand, within MMJJ_RS04260at 793.850 kb on - strand, within MMJJ_RS04260at 793.851 kb on + strand, within MMJJ_RS04260at 793.865 kb on + strand, within MMJJ_RS04260at 793.875 kb on + strand, within MMJJ_RS04260at 793.900 kb on + strand, within MMJJ_RS04260at 793.900 kb on + strand, within MMJJ_RS04260at 793.907 kb on - strand, within MMJJ_RS04260at 793.907 kb on - strand, within MMJJ_RS04260at 793.908 kb on + strand, within MMJJ_RS04260at 793.912 kb on - strand, within MMJJ_RS04260at 793.912 kb on - strand, within MMJJ_RS04260at 793.913 kb on + strand, within MMJJ_RS04260at 793.917 kb on - strand, within MMJJ_RS04260at 793.917 kb on - strand, within MMJJ_RS04260at 793.918 kb on + strand, within MMJJ_RS04260at 793.939 kb on - strand, within MMJJ_RS04260at 793.939 kb on - strand, within MMJJ_RS04260at 793.939 kb on - strand, within MMJJ_RS04260at 793.939 kb on - strand, within MMJJ_RS04260at 793.940 kb on + strand, within MMJJ_RS04260at 793.940 kb on + strand, within MMJJ_RS04260at 793.940 kb on + strand, within MMJJ_RS04260at 794.032 kb on + strand, within MMJJ_RS04260at 794.101 kb on + strand, within MMJJ_RS04260at 794.190 kb on + strand, within MMJJ_RS04260at 794.259 kb on - strand, within MMJJ_RS04260at 794.417 kb on - strand, within MMJJ_RS04260at 794.418 kb on + strand, within MMJJ_RS04260at 794.429 kb on + strand, within MMJJ_RS04260at 794.476 kb on - strandat 794.537 kb on - strandat 794.538 kb on + strandat 794.553 kb on - strandat 794.591 kb on - strandat 794.591 kb on - strandat 794.591 kb on - strandat 794.591 kb on - strandat 794.592 kb on + strandat 794.592 kb on + strandat 794.647 kb on - strandat 794.648 kb on + strandat 794.700 kb on + strand, within MMJJ_RS04265at 794.757 kb on - strand, within MMJJ_RS04265at 794.761 kb on - strand, within MMJJ_RS04265at 794.762 kb on + strand, within MMJJ_RS04265at 794.762 kb on + strand, within MMJJ_RS04265at 794.819 kb on + strand, within MMJJ_RS04265at 794.835 kb on - strand, within MMJJ_RS04265at 794.863 kb on - strand, within MMJJ_RS04265at 794.890 kb on - strand, within MMJJ_RS04265at 794.978 kb on + strand, within MMJJ_RS04265at 795.019 kb on - strand, within MMJJ_RS04265at 795.020 kb on + strand, within MMJJ_RS04265at 795.056 kb on - strand, within MMJJ_RS04265at 795.056 kb on - strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.058 kb on - strand, within MMJJ_RS04265at 795.058 kb on - strand, within MMJJ_RS04265at 795.085 kb on + strand, within MMJJ_RS04265at 795.085 kb on + strand, within MMJJ_RS04265at 795.147 kb on + strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.186 kb on + strandat 795.186 kb on + strandat 795.186 kb on + strandat 795.211 kb on + strandat 795.216 kb on + strandat 795.225 kb on - strandat 795.225 kb on - strandat 795.226 kb on + strandat 795.226 kb on + strandat 795.231 kb on - strandat 795.232 kb on + strandat 795.316 kb on + strand, within MMJJ_RS04270at 795.316 kb on + strand, within MMJJ_RS04270at 795.320 kb on + strand, within MMJJ_RS04270at 795.323 kb on + strand, within MMJJ_RS04270at 795.706 kb on - strand, within MMJJ_RS04270at 795.711 kb on + strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.785 kb on + strand, within MMJJ_RS04270at 795.900 kb on + strand, within MMJJ_RS04270at 795.936 kb on - strandat 795.993 kb on - strandat 796.005 kb on + strandat 796.015 kb on + strandat 796.036 kb on + strandat 796.074 kb on - strandat 796.074 kb on - strandat 796.075 kb on + strandat 796.075 kb on + strandat 796.091 kb on - strandat 796.096 kb on + strandat 796.183 kb on + strand, within MMJJ_RS04275

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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793,725 - MMJJ_RS04260 0.24 +1.3
793,725 - MMJJ_RS04260 0.24 -2.3
793,758 - MMJJ_RS04260 0.27 +2.3
793,758 - MMJJ_RS04260 0.27 +2.0
793,758 - MMJJ_RS04260 0.27 +0.3
793,759 + +1.4
793,759 + MMJJ_RS04260 0.27 +1.7
793,759 + MMJJ_RS04260 0.27 +1.3
793,759 + MMJJ_RS04260 0.27 -2.1
793,759 + MMJJ_RS04260 0.27 -1.3
793,761 - MMJJ_RS04260 0.27 -0.9
793,762 + MMJJ_RS04260 0.27 +0.8
793,762 + MMJJ_RS04260 0.27 +1.2
793,791 - MMJJ_RS04260 0.30 +3.0
793,815 - MMJJ_RS04260 0.32 -1.7
793,815 - MMJJ_RS04260 0.32 -1.6
793,849 + MMJJ_RS04260 0.35 +0.9
793,850 - MMJJ_RS04260 0.35 -0.2
793,851 + MMJJ_RS04260 0.35 +0.4
793,865 + MMJJ_RS04260 0.36 -0.2
793,875 + MMJJ_RS04260 0.37 -2.6
793,900 + MMJJ_RS04260 0.39 -0.0
793,900 + MMJJ_RS04260 0.39 -1.3
793,907 - MMJJ_RS04260 0.40 +2.2
793,907 - MMJJ_RS04260 0.40 -0.7
793,908 + MMJJ_RS04260 0.40 +2.4
793,912 - MMJJ_RS04260 0.40 +3.6
793,912 - MMJJ_RS04260 0.40 +1.8
793,913 + MMJJ_RS04260 0.40 +0.8
793,917 - MMJJ_RS04260 0.41 -3.3
793,917 - MMJJ_RS04260 0.41 -0.0
793,918 + MMJJ_RS04260 0.41 -2.1
793,939 - MMJJ_RS04260 0.43 -1.1
793,939 - MMJJ_RS04260 0.43 +0.8
793,939 - MMJJ_RS04260 0.43 +1.5
793,939 - MMJJ_RS04260 0.43 -1.1
793,940 + MMJJ_RS04260 0.43 +3.0
793,940 + MMJJ_RS04260 0.43 +0.3
793,940 + MMJJ_RS04260 0.43 +3.0
794,032 + MMJJ_RS04260 0.51 +0.2
794,101 + MMJJ_RS04260 0.57 +1.2
794,190 + MMJJ_RS04260 0.65 -1.1
794,259 - MMJJ_RS04260 0.71 -0.9
794,417 - MMJJ_RS04260 0.85 +0.1
794,418 + MMJJ_RS04260 0.85 +1.0
794,429 + MMJJ_RS04260 0.86 -0.7
794,476 - +0.8
794,537 - -2.5
794,538 + -2.9
794,553 - -0.6
794,591 - -2.1
794,591 - -0.2
794,591 - +2.0
794,591 - +0.0
794,592 + -0.6
794,592 + -0.3
794,647 - -0.2
794,648 + +2.4
794,700 + MMJJ_RS04265 0.15 -0.9
794,757 - MMJJ_RS04265 0.25 +3.7
794,761 - MMJJ_RS04265 0.25 -1.5
794,762 + MMJJ_RS04265 0.26 -1.9
794,762 + MMJJ_RS04265 0.26 +1.2
794,819 + MMJJ_RS04265 0.35 -1.2
794,835 - MMJJ_RS04265 0.38 +0.4
794,863 - MMJJ_RS04265 0.43 +0.7
794,890 - MMJJ_RS04265 0.48 -0.3
794,978 + MMJJ_RS04265 0.63 +0.2
795,019 - MMJJ_RS04265 0.70 -2.1
795,020 + MMJJ_RS04265 0.70 -2.7
795,056 - MMJJ_RS04265 0.76 -1.8
795,056 - MMJJ_RS04265 0.76 +4.0
795,057 + MMJJ_RS04265 0.76 +0.7
795,057 + MMJJ_RS04265 0.76 +0.2
795,057 + MMJJ_RS04265 0.76 -0.3
795,057 + MMJJ_RS04265 0.76 -2.0
795,057 + MMJJ_RS04265 0.76 -1.4
795,057 + MMJJ_RS04265 0.76 +0.6
795,057 + MMJJ_RS04265 0.76 -1.2
795,058 - MMJJ_RS04265 0.76 -1.7
795,058 - MMJJ_RS04265 0.76 +0.5
795,085 + MMJJ_RS04265 0.81 -3.6
795,085 + MMJJ_RS04265 0.81 -2.5
795,147 + -0.6
795,185 - +3.9
795,185 - -3.1
795,185 - -0.7
795,185 - +1.1
795,185 - +1.9
795,185 - -1.7
795,186 + +2.1
795,186 + -1.0
795,186 + +2.3
795,211 + +2.2
795,216 + -1.1
795,225 - -1.2
795,225 - -1.2
795,226 + +0.4
795,226 + +1.6
795,231 - +4.7
795,232 + +1.4
795,316 + MMJJ_RS04270 0.13 +0.7
795,316 + MMJJ_RS04270 0.13 +1.9
795,320 + MMJJ_RS04270 0.14 +1.4
795,323 + MMJJ_RS04270 0.14 -0.5
795,706 - MMJJ_RS04270 0.63 +0.6
795,711 + MMJJ_RS04270 0.64 -1.3
795,784 - MMJJ_RS04270 0.73 +0.5
795,784 - MMJJ_RS04270 0.73 -2.6
795,784 - MMJJ_RS04270 0.73 +0.2
795,784 - MMJJ_RS04270 0.73 +0.2
795,785 + MMJJ_RS04270 0.73 -1.4
795,900 + MMJJ_RS04270 0.88 +2.2
795,936 - +2.1
795,993 - -0.1
796,005 + -2.9
796,015 + -1.1
796,036 + +1.7
796,074 - +0.1
796,074 - +2.8
796,075 + +2.9
796,075 + +2.5
796,091 - +2.6
796,096 + -0.7
796,183 + MMJJ_RS04275 0.21 +1.3

Or see this region's nucleotide sequence