Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04190 and MMJJ_RS04195 are separated by 113 nucleotides MMJJ_RS04195 and MMJJ_RS04200 are separated by 11 nucleotides MMJJ_RS04200 and MMJJ_RS04205 are separated by 11 nucleotides
MMJJ_RS04190: MMJJ_RS04190 - hypothetical protein, at 780,183 to 780,593
_RS04190
MMJJ_RS04195: MMJJ_RS04195 - XTP/dITP diphosphatase, at 780,707 to 781,261
_RS04195
MMJJ_RS04200: MMJJ_RS04200 - triphosphoribosyl-dephospho-CoA synthase, at 781,273 to 782,154
_RS04200
MMJJ_RS04205: MMJJ_RS04205 - glycine--tRNA ligase, at 782,166 to 783,890
_RS04205
Position (kb) 781
782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 780.312 kb on - strand, within MMJJ_RS04190 at 780.325 kb on - strand, within MMJJ_RS04190 at 780.329 kb on - strand, within MMJJ_RS04190 at 780.330 kb on + strand, within MMJJ_RS04190 at 780.336 kb on + strand, within MMJJ_RS04190 at 780.344 kb on - strand, within MMJJ_RS04190 at 780.356 kb on - strand, within MMJJ_RS04190 at 780.356 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.360 kb on - strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.361 kb on + strand, within MMJJ_RS04190 at 780.383 kb on + strand, within MMJJ_RS04190 at 780.391 kb on + strand, within MMJJ_RS04190 at 780.391 kb on + strand, within MMJJ_RS04190 at 780.553 kb on + strand at 780.567 kb on - strand at 780.594 kb on - strand at 780.595 kb on + strand at 780.613 kb on - strand at 780.614 kb on + strand at 780.614 kb on + strand at 780.614 kb on + strand at 780.639 kb on - strand at 780.641 kb on - strand at 780.642 kb on + strand at 780.642 kb on + strand at 780.645 kb on - strand at 780.645 kb on - strand at 780.645 kb on - strand at 780.645 kb on - strand at 780.646 kb on + strand at 780.669 kb on - strand at 780.673 kb on + strand at 780.746 kb on + strand at 780.760 kb on - strand at 780.763 kb on + strand, within MMJJ_RS04195 at 780.856 kb on + strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.888 kb on - strand, within MMJJ_RS04195 at 780.889 kb on + strand, within MMJJ_RS04195 at 780.889 kb on + strand, within MMJJ_RS04195 at 780.941 kb on - strand, within MMJJ_RS04195 at 780.941 kb on - strand, within MMJJ_RS04195 at 780.941 kb on - strand, within MMJJ_RS04195 at 780.942 kb on + strand, within MMJJ_RS04195 at 780.965 kb on + strand, within MMJJ_RS04195 at 781.043 kb on - strand, within MMJJ_RS04195 at 781.043 kb on - strand, within MMJJ_RS04195 at 781.044 kb on + strand, within MMJJ_RS04195 at 781.044 kb on + strand, within MMJJ_RS04195 at 781.066 kb on + strand, within MMJJ_RS04195 at 781.090 kb on - strand, within MMJJ_RS04195 at 781.162 kb on - strand, within MMJJ_RS04195 at 781.246 kb on + strand at 781.377 kb on + strand, within MMJJ_RS04200 at 781.382 kb on + strand, within MMJJ_RS04200 at 781.422 kb on + strand, within MMJJ_RS04200 at 781.449 kb on - strand, within MMJJ_RS04200 at 781.478 kb on - strand, within MMJJ_RS04200 at 781.479 kb on + strand, within MMJJ_RS04200 at 781.523 kb on - strand, within MMJJ_RS04200 at 781.528 kb on + strand, within MMJJ_RS04200 at 781.649 kb on + strand, within MMJJ_RS04200 at 781.713 kb on - strand, within MMJJ_RS04200 at 781.714 kb on + strand, within MMJJ_RS04200 at 781.891 kb on + strand, within MMJJ_RS04200 at 781.910 kb on - strand, within MMJJ_RS04200 at 781.910 kb on - strand, within MMJJ_RS04200 at 781.934 kb on - strand, within MMJJ_RS04200 at 781.953 kb on - strand, within MMJJ_RS04200 at 781.986 kb on - strand, within MMJJ_RS04200 at 782.319 kb on - strand at 782.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 780,312 - MMJJ_RS04190 0.31 -1.0 780,325 - MMJJ_RS04190 0.35 +2.9 780,329 - MMJJ_RS04190 0.36 +0.1 780,330 + MMJJ_RS04190 0.36 -1.5 780,336 + MMJJ_RS04190 0.37 -0.2 780,344 - MMJJ_RS04190 0.39 -0.8 780,356 - MMJJ_RS04190 0.42 +0.7 780,356 - MMJJ_RS04190 0.42 -2.3 780,360 - MMJJ_RS04190 0.43 -0.2 780,360 - MMJJ_RS04190 0.43 +1.5 780,360 - MMJJ_RS04190 0.43 +0.4 780,360 - MMJJ_RS04190 0.43 -1.3 780,360 - MMJJ_RS04190 0.43 -1.6 780,360 - MMJJ_RS04190 0.43 -0.4 780,360 - MMJJ_RS04190 0.43 -3.1 780,360 - MMJJ_RS04190 0.43 +1.0 780,361 + MMJJ_RS04190 0.43 -0.4 780,361 + MMJJ_RS04190 0.43 +2.6 780,361 + MMJJ_RS04190 0.43 +1.0 780,361 + MMJJ_RS04190 0.43 -1.3 780,361 + MMJJ_RS04190 0.43 +1.5 780,361 + MMJJ_RS04190 0.43 +3.1 780,383 + MMJJ_RS04190 0.49 +0.4 780,391 + MMJJ_RS04190 0.51 -0.8 780,391 + MMJJ_RS04190 0.51 -0.3 780,553 + -1.2 780,567 - -1.0 780,594 - +2.1 780,595 + -3.0 780,613 - -0.2 780,614 + -0.1 780,614 + -0.9 780,614 + -0.3 780,639 - -0.6 780,641 - +2.4 780,642 + -2.5 780,642 + -1.4 780,645 - +0.1 780,645 - -0.9 780,645 - +0.6 780,645 - +1.4 780,646 + +3.0 780,669 - -0.6 780,673 + +1.3 780,746 + +2.1 780,760 - -1.9 780,763 + MMJJ_RS04195 0.10 -0.6 780,856 + MMJJ_RS04195 0.27 -1.0 780,888 - MMJJ_RS04195 0.33 +0.8 780,888 - MMJJ_RS04195 0.33 -1.6 780,888 - MMJJ_RS04195 0.33 -0.0 780,888 - MMJJ_RS04195 0.33 +1.4 780,888 - MMJJ_RS04195 0.33 -1.7 780,889 + MMJJ_RS04195 0.33 +1.6 780,889 + MMJJ_RS04195 0.33 +1.1 780,941 - MMJJ_RS04195 0.42 +1.4 780,941 - MMJJ_RS04195 0.42 -1.4 780,941 - MMJJ_RS04195 0.42 -1.5 780,942 + MMJJ_RS04195 0.42 +0.4 780,965 + MMJJ_RS04195 0.46 +2.4 781,043 - MMJJ_RS04195 0.61 +1.5 781,043 - MMJJ_RS04195 0.61 +2.0 781,044 + MMJJ_RS04195 0.61 +1.5 781,044 + MMJJ_RS04195 0.61 +2.9 781,066 + MMJJ_RS04195 0.65 -1.2 781,090 - MMJJ_RS04195 0.69 +0.4 781,162 - MMJJ_RS04195 0.82 -1.3 781,246 + -1.4 781,377 + MMJJ_RS04200 0.12 +1.4 781,382 + MMJJ_RS04200 0.12 -0.9 781,422 + MMJJ_RS04200 0.17 -1.2 781,449 - MMJJ_RS04200 0.20 -1.2 781,478 - MMJJ_RS04200 0.23 +0.4 781,479 + MMJJ_RS04200 0.23 -1.0 781,523 - MMJJ_RS04200 0.28 -1.9 781,528 + MMJJ_RS04200 0.29 -0.2 781,649 + MMJJ_RS04200 0.43 -0.6 781,713 - MMJJ_RS04200 0.50 -0.6 781,714 + MMJJ_RS04200 0.50 -0.9 781,891 + MMJJ_RS04200 0.70 -1.4 781,910 - MMJJ_RS04200 0.72 +2.4 781,910 - MMJJ_RS04200 0.72 +0.4 781,934 - MMJJ_RS04200 0.75 -0.9 781,953 - MMJJ_RS04200 0.77 -0.6 781,986 - MMJJ_RS04200 0.81 +1.4 782,319 - +0.4 782,998 + -0.6
Or see this region's nucleotide sequence