Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04145 and MMJJ_RS04150 are separated by 9 nucleotides MMJJ_RS04150 and MMJJ_RS04155 are separated by 9 nucleotides MMJJ_RS04155 and MMJJ_RS04160 are separated by 78 nucleotides
MMJJ_RS04145: MMJJ_RS04145 - glutamate-1-semialdehyde 2,1-aminomutase, at 770,396 to 771,679
_RS04145
MMJJ_RS04150: MMJJ_RS04150 - DUF5379 domain-containing protein, at 771,689 to 771,967
_RS04150
MMJJ_RS04155: MMJJ_RS04155 - hypothetical protein, at 771,977 to 772,216
_RS04155
MMJJ_RS04160: MMJJ_RS04160 - sodium/proline symporter PutP, at 772,295 to 773,773
_RS04160
Position (kb) 771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 770.698 kb on - strand, within MMJJ_RS04145 at 770.794 kb on + strand, within MMJJ_RS04145 at 770.843 kb on - strand, within MMJJ_RS04145 at 770.913 kb on - strand, within MMJJ_RS04145 at 771.071 kb on + strand, within MMJJ_RS04145 at 771.154 kb on - strand, within MMJJ_RS04145 at 771.224 kb on - strand, within MMJJ_RS04145 at 771.225 kb on + strand, within MMJJ_RS04145 at 771.225 kb on + strand, within MMJJ_RS04145 at 771.271 kb on - strand, within MMJJ_RS04145 at 771.272 kb on + strand, within MMJJ_RS04145 at 771.283 kb on - strand, within MMJJ_RS04145 at 771.303 kb on + strand, within MMJJ_RS04145 at 771.367 kb on - strand, within MMJJ_RS04145 at 771.367 kb on - strand, within MMJJ_RS04145 at 771.456 kb on + strand, within MMJJ_RS04145 at 771.458 kb on - strand, within MMJJ_RS04145 at 771.460 kb on - strand, within MMJJ_RS04145 at 771.500 kb on - strand, within MMJJ_RS04145 at 771.642 kb on + strand at 771.709 kb on + strand at 771.709 kb on + strand at 771.726 kb on + strand, within MMJJ_RS04150 at 771.752 kb on - strand, within MMJJ_RS04150 at 771.801 kb on + strand, within MMJJ_RS04150 at 771.827 kb on + strand, within MMJJ_RS04150 at 771.878 kb on - strand, within MMJJ_RS04150 at 771.897 kb on - strand at 771.973 kb on + strand at 771.973 kb on + strand at 771.979 kb on + strand at 772.043 kb on + strand, within MMJJ_RS04155 at 772.044 kb on - strand, within MMJJ_RS04155 at 772.044 kb on - strand, within MMJJ_RS04155 at 772.048 kb on - strand at 772.048 kb on - strand, within MMJJ_RS04155 at 772.048 kb on - strand, within MMJJ_RS04155 at 772.049 kb on + strand, within MMJJ_RS04155 at 772.049 kb on + strand, within MMJJ_RS04155 at 772.049 kb on + strand, within MMJJ_RS04155 at 772.049 kb on + strand, within MMJJ_RS04155 at 772.049 kb on + strand, within MMJJ_RS04155 at 772.049 kb on + strand, within MMJJ_RS04155 at 772.055 kb on - strand, within MMJJ_RS04155 at 772.061 kb on - strand at 772.067 kb on - strand, within MMJJ_RS04155 at 772.068 kb on + strand, within MMJJ_RS04155 at 772.068 kb on + strand at 772.068 kb on + strand, within MMJJ_RS04155 at 772.068 kb on + strand, within MMJJ_RS04155 at 772.079 kb on - strand, within MMJJ_RS04155 at 772.084 kb on + strand, within MMJJ_RS04155 at 772.099 kb on - strand, within MMJJ_RS04155 at 772.104 kb on + strand at 772.117 kb on - strand, within MMJJ_RS04155 at 772.117 kb on - strand, within MMJJ_RS04155 at 772.121 kb on - strand, within MMJJ_RS04155 at 772.173 kb on + strand, within MMJJ_RS04155 at 772.216 kb on - strand at 772.230 kb on + strand at 772.247 kb on - strand at 772.247 kb on - strand at 772.256 kb on - strand at 772.257 kb on + strand at 772.260 kb on - strand at 772.260 kb on - strand at 772.260 kb on - strand at 772.261 kb on + strand at 772.269 kb on - strand at 772.269 kb on - strand at 772.270 kb on + strand at 772.276 kb on - strand at 772.287 kb on - strand at 772.340 kb on - strand at 772.367 kb on - strand at 772.457 kb on - strand, within MMJJ_RS04160 at 772.617 kb on - strand, within MMJJ_RS04160 at 772.620 kb on - strand, within MMJJ_RS04160 at 772.621 kb on + strand, within MMJJ_RS04160 at 772.625 kb on - strand, within MMJJ_RS04160 at 772.736 kb on - strand, within MMJJ_RS04160 at 772.736 kb on - strand, within MMJJ_RS04160 at 772.838 kb on - strand, within MMJJ_RS04160 at 772.839 kb on + strand, within MMJJ_RS04160 at 772.839 kb on + strand, within MMJJ_RS04160 at 772.839 kb on + strand, within MMJJ_RS04160 at 772.906 kb on - strand, within MMJJ_RS04160
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 770,698 - MMJJ_RS04145 0.24 -1.9 770,794 + MMJJ_RS04145 0.31 -0.9 770,843 - MMJJ_RS04145 0.35 +1.5 770,913 - MMJJ_RS04145 0.40 +1.5 771,071 + MMJJ_RS04145 0.53 +1.7 771,154 - MMJJ_RS04145 0.59 +1.8 771,224 - MMJJ_RS04145 0.64 -1.2 771,225 + MMJJ_RS04145 0.65 -2.1 771,225 + MMJJ_RS04145 0.65 -0.6 771,271 - MMJJ_RS04145 0.68 -1.4 771,272 + MMJJ_RS04145 0.68 +1.5 771,283 - MMJJ_RS04145 0.69 +2.9 771,303 + MMJJ_RS04145 0.71 +4.5 771,367 - MMJJ_RS04145 0.76 -2.4 771,367 - MMJJ_RS04145 0.76 +2.7 771,456 + MMJJ_RS04145 0.83 +1.0 771,458 - MMJJ_RS04145 0.83 -0.6 771,460 - MMJJ_RS04145 0.83 +1.1 771,500 - MMJJ_RS04145 0.86 +3.3 771,642 + +0.6 771,709 + +1.4 771,709 + -0.6 771,726 + MMJJ_RS04150 0.13 +0.4 771,752 - MMJJ_RS04150 0.23 -0.2 771,801 + MMJJ_RS04150 0.40 -1.2 771,827 + MMJJ_RS04150 0.49 -2.2 771,878 - MMJJ_RS04150 0.68 -2.1 771,897 - -0.6 771,973 + -0.9 771,973 + +0.5 771,979 + +0.7 772,043 + MMJJ_RS04155 0.28 +0.4 772,044 - MMJJ_RS04155 0.28 -0.2 772,044 - MMJJ_RS04155 0.28 -1.2 772,048 - +1.4 772,048 - MMJJ_RS04155 0.30 +0.4 772,048 - MMJJ_RS04155 0.30 +1.4 772,049 + MMJJ_RS04155 0.30 +1.4 772,049 + MMJJ_RS04155 0.30 -0.2 772,049 + MMJJ_RS04155 0.30 -0.8 772,049 + MMJJ_RS04155 0.30 -0.2 772,049 + MMJJ_RS04155 0.30 -1.9 772,049 + MMJJ_RS04155 0.30 +0.4 772,055 - MMJJ_RS04155 0.33 +0.4 772,061 - -0.2 772,067 - MMJJ_RS04155 0.38 +1.0 772,068 + MMJJ_RS04155 0.38 +0.4 772,068 + +1.4 772,068 + MMJJ_RS04155 0.38 -1.9 772,068 + MMJJ_RS04155 0.38 -0.2 772,079 - MMJJ_RS04155 0.42 -1.2 772,084 + MMJJ_RS04155 0.45 +3.2 772,099 - MMJJ_RS04155 0.51 -1.6 772,104 + +2.4 772,117 - MMJJ_RS04155 0.58 +4.0 772,117 - MMJJ_RS04155 0.58 +2.0 772,121 - MMJJ_RS04155 0.60 -0.6 772,173 + MMJJ_RS04155 0.82 -0.9 772,216 - -0.4 772,230 + +3.4 772,247 - -1.8 772,247 - +0.1 772,256 - -0.9 772,257 + -1.7 772,260 - +0.5 772,260 - +1.4 772,260 - +0.4 772,261 + -0.4 772,269 - +1.8 772,269 - -1.9 772,270 + +1.8 772,276 - +3.6 772,287 - -0.5 772,340 - +1.2 772,367 - +3.6 772,457 - MMJJ_RS04160 0.11 -1.4 772,617 - MMJJ_RS04160 0.22 +1.4 772,620 - MMJJ_RS04160 0.22 +0.9 772,621 + MMJJ_RS04160 0.22 -3.0 772,625 - MMJJ_RS04160 0.22 -1.9 772,736 - MMJJ_RS04160 0.30 +0.3 772,736 - MMJJ_RS04160 0.30 -0.6 772,838 - MMJJ_RS04160 0.37 -1.9 772,839 + MMJJ_RS04160 0.37 +1.1 772,839 + MMJJ_RS04160 0.37 +0.8 772,839 + MMJJ_RS04160 0.37 +2.6 772,906 - MMJJ_RS04160 0.41 -1.8
Or see this region's nucleotide sequence