Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03960 and MMJJ_RS03965 overlap by 4 nucleotides MMJJ_RS03965 and MMJJ_RS03970 are separated by 178 nucleotides MMJJ_RS03970 and MMJJ_RS03975 are separated by 13 nucleotides
MMJJ_RS03960: MMJJ_RS03960 - DUF2067 domain-containing protein, at 739,052 to 739,669
_RS03960
MMJJ_RS03965: MMJJ_RS03965 - DNA-directed RNA polymerase subunit L, at 739,666 to 739,956
_RS03965
MMJJ_RS03970: MMJJ_RS03970 - 50S ribosomal protein L1, at 740,135 to 740,776
_RS03970
MMJJ_RS03975: MMJJ_RS03975 - 50S ribosomal protein L10, at 740,790 to 741,797
_RS03975
Position (kb) 739
740 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 738.714 kb on - strand at 738.740 kb on + strand at 738.740 kb on + strand at 738.753 kb on - strand at 738.753 kb on - strand at 738.753 kb on - strand at 738.779 kb on - strand at 738.785 kb on - strand at 738.785 kb on - strand at 738.785 kb on - strand at 738.786 kb on + strand at 738.786 kb on + strand at 738.786 kb on + strand at 738.796 kb on - strand at 738.796 kb on - strand at 738.800 kb on - strand at 738.818 kb on - strand at 738.869 kb on - strand at 738.869 kb on - strand at 738.870 kb on + strand at 738.870 kb on + strand at 738.870 kb on + strand at 738.871 kb on - strand at 738.871 kb on - strand at 738.874 kb on + strand at 738.874 kb on + strand at 738.874 kb on + strand at 738.874 kb on + strand at 738.874 kb on + strand at 738.918 kb on - strand at 738.950 kb on - strand at 738.950 kb on - strand at 738.950 kb on - strand at 738.950 kb on - strand at 738.950 kb on - strand at 738.950 kb on - strand at 738.950 kb on - strand at 738.950 kb on - strand at 738.951 kb on + strand at 738.951 kb on + strand at 738.951 kb on + strand at 738.951 kb on + strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.955 kb on - strand at 738.956 kb on + strand at 738.956 kb on + strand at 738.956 kb on + strand at 738.956 kb on + strand at 738.956 kb on + strand at 738.956 kb on + strand at 738.956 kb on + strand at 738.956 kb on + strand at 738.956 kb on + strand at 738.956 kb on + strand at 738.957 kb on - strand at 738.958 kb on + strand at 738.958 kb on + strand at 738.961 kb on - strand at 738.961 kb on - strand at 738.961 kb on - strand at 738.961 kb on - strand at 738.961 kb on - strand at 738.961 kb on - strand at 738.961 kb on - strand at 738.961 kb on - strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.965 kb on - strand at 738.965 kb on - strand at 738.965 kb on - strand at 738.965 kb on - strand at 738.966 kb on + strand at 738.966 kb on + strand at 738.966 kb on + strand at 738.966 kb on + strand at 738.971 kb on - strand at 738.971 kb on - strand at 738.971 kb on - strand at 738.972 kb on + strand at 738.972 kb on + strand at 738.972 kb on + strand at 738.972 kb on + strand at 738.972 kb on + strand at 738.972 kb on + strand at 738.976 kb on + strand at 738.976 kb on + strand at 738.976 kb on + strand at 738.976 kb on + strand at 738.976 kb on + strand at 738.987 kb on - strand at 738.988 kb on + strand at 739.004 kb on - strand at 739.004 kb on - strand at 739.004 kb on - strand at 739.004 kb on - strand at 739.004 kb on - strand at 739.004 kb on - strand at 739.004 kb on - strand at 739.004 kb on - strand at 739.004 kb on - strand at 739.005 kb on + strand at 739.005 kb on + strand at 739.007 kb on + strand at 739.007 kb on + strand at 739.007 kb on + strand at 739.010 kb on - strand at 739.010 kb on - strand at 739.011 kb on + strand at 739.011 kb on + strand at 739.062 kb on - strand at 739.063 kb on + strand at 739.063 kb on + strand at 739.066 kb on + strand at 739.066 kb on + strand at 739.066 kb on + strand at 739.072 kb on + strand at 739.113 kb on - strand at 739.117 kb on - strand, within MMJJ_RS03960 at 739.117 kb on - strand, within MMJJ_RS03960 at 739.118 kb on + strand, within MMJJ_RS03960 at 739.118 kb on + strand, within MMJJ_RS03960 at 739.175 kb on - strand, within MMJJ_RS03960 at 739.176 kb on + strand, within MMJJ_RS03960 at 739.178 kb on + strand, within MMJJ_RS03960 at 739.178 kb on + strand, within MMJJ_RS03960 at 739.198 kb on + strand, within MMJJ_RS03960 at 739.224 kb on - strand, within MMJJ_RS03960 at 739.246 kb on - strand, within MMJJ_RS03960 at 739.246 kb on - strand, within MMJJ_RS03960 at 739.246 kb on - strand, within MMJJ_RS03960 at 739.247 kb on + strand, within MMJJ_RS03960 at 739.247 kb on + strand, within MMJJ_RS03960 at 739.250 kb on + strand, within MMJJ_RS03960 at 739.253 kb on + strand, within MMJJ_RS03960 at 739.254 kb on - strand, within MMJJ_RS03960 at 739.255 kb on + strand, within MMJJ_RS03960 at 739.255 kb on + strand, within MMJJ_RS03960 at 739.258 kb on - strand, within MMJJ_RS03960 at 739.258 kb on - strand, within MMJJ_RS03960 at 739.271 kb on + strand, within MMJJ_RS03960 at 739.271 kb on + strand, within MMJJ_RS03960 at 739.320 kb on - strand, within MMJJ_RS03960 at 739.326 kb on + strand, within MMJJ_RS03960 at 739.368 kb on - strand, within MMJJ_RS03960 at 739.382 kb on + strand, within MMJJ_RS03960 at 739.390 kb on + strand, within MMJJ_RS03960 at 739.436 kb on + strand, within MMJJ_RS03960 at 739.436 kb on + strand, within MMJJ_RS03960 at 739.466 kb on - strand, within MMJJ_RS03960 at 739.467 kb on + strand, within MMJJ_RS03960 at 739.467 kb on + strand, within MMJJ_RS03960 at 739.531 kb on + strand, within MMJJ_RS03960 at 739.531 kb on + strand, within MMJJ_RS03960 at 739.532 kb on - strand, within MMJJ_RS03960 at 739.532 kb on - strand, within MMJJ_RS03960 at 739.532 kb on - strand, within MMJJ_RS03960 at 739.532 kb on - strand, within MMJJ_RS03960 at 739.533 kb on + strand, within MMJJ_RS03960 at 739.533 kb on + strand, within MMJJ_RS03960 at 739.534 kb on - strand, within MMJJ_RS03960 at 739.536 kb on - strand, within MMJJ_RS03960 at 739.537 kb on + strand, within MMJJ_RS03960 at 739.537 kb on + strand, within MMJJ_RS03960 at 739.629 kb on - strand at 739.672 kb on - strand at 739.673 kb on + strand at 739.719 kb on + strand, within MMJJ_RS03965 at 739.719 kb on + strand, within MMJJ_RS03965 at 739.795 kb on - strand at 739.803 kb on + strand, within MMJJ_RS03965 at 739.952 kb on - strand at 739.954 kb on - strand at 739.967 kb on + strand at 739.969 kb on + strand at 739.976 kb on - strand at 739.977 kb on + strand at 740.053 kb on - strand at 740.054 kb on + strand at 740.057 kb on - strand at 740.057 kb on - strand at 740.058 kb on + strand at 740.075 kb on - strand at 740.120 kb on + strand at 740.515 kb on - strand, within MMJJ_RS03970 at 740.551 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 738,714 - +1.4 738,740 + +0.9 738,740 + -2.1 738,753 - -1.7 738,753 - -0.6 738,753 - -2.1 738,779 - -1.9 738,785 - +1.6 738,785 - -1.2 738,785 - +2.8 738,786 + -0.9 738,786 + +2.9 738,786 + +0.1 738,796 - -0.1 738,796 - -0.4 738,800 - +0.3 738,818 - -2.0 738,869 - +1.0 738,869 - -2.6 738,870 + +2.3 738,870 + -2.0 738,870 + +1.9 738,871 - +1.9 738,871 - +2.2 738,874 + +0.8 738,874 + -2.2 738,874 + +2.4 738,874 + -1.6 738,874 + +0.2 738,918 - -0.3 738,950 - -1.7 738,950 - +2.5 738,950 - +2.9 738,950 - +2.9 738,950 - -1.4 738,950 - -1.2 738,950 - -0.2 738,950 - -0.6 738,951 + -0.6 738,951 + -0.5 738,951 + +0.4 738,951 + +0.2 738,955 - +1.9 738,955 - +1.0 738,955 - -1.8 738,955 - +1.2 738,955 - +3.2 738,955 - +1.4 738,955 - -1.7 738,956 + +2.5 738,956 + -1.4 738,956 + +2.5 738,956 + -1.8 738,956 + +2.4 738,956 + -0.1 738,956 + -1.9 738,956 + +4.8 738,956 + -2.5 738,956 + +1.6 738,957 - -1.5 738,958 + -1.9 738,958 + +0.4 738,961 - +1.0 738,961 - -0.4 738,961 - +0.7 738,961 - +2.5 738,961 - +1.1 738,961 - -0.5 738,961 - +1.5 738,961 - +1.1 738,962 + -0.7 738,962 + -0.4 738,962 + -2.7 738,962 + -0.8 738,962 + -2.3 738,962 + -2.9 738,965 - +1.3 738,965 - -0.7 738,965 - -1.9 738,965 - -0.1 738,966 + -0.7 738,966 + -1.3 738,966 + -1.6 738,966 + +0.8 738,971 - +3.4 738,971 - -2.4 738,971 - -1.2 738,972 + -2.5 738,972 + -1.8 738,972 + -2.7 738,972 + +2.6 738,972 + -1.4 738,972 + -3.1 738,976 + +1.1 738,976 + +0.5 738,976 + +0.3 738,976 + -2.7 738,976 + -1.0 738,987 - +1.4 738,988 + -1.6 739,004 - +0.4 739,004 - -0.3 739,004 - -0.1 739,004 - -0.8 739,004 - +1.3 739,004 - -1.1 739,004 - -1.6 739,004 - -1.3 739,004 - +3.2 739,005 + -2.1 739,005 + +2.5 739,007 + +1.9 739,007 + -1.2 739,007 + +1.4 739,010 - -4.5 739,010 - +2.6 739,011 + +0.7 739,011 + +5.9 739,062 - +0.3 739,063 + +3.3 739,063 + -0.2 739,066 + -0.3 739,066 + -0.6 739,066 + -1.1 739,072 + +0.6 739,113 - +2.0 739,117 - MMJJ_RS03960 0.11 -2.6 739,117 - MMJJ_RS03960 0.11 +5.3 739,118 + MMJJ_RS03960 0.11 -1.2 739,118 + MMJJ_RS03960 0.11 +2.0 739,175 - MMJJ_RS03960 0.20 +1.5 739,176 + MMJJ_RS03960 0.20 -0.8 739,178 + MMJJ_RS03960 0.20 -1.4 739,178 + MMJJ_RS03960 0.20 -0.8 739,198 + MMJJ_RS03960 0.24 -1.9 739,224 - MMJJ_RS03960 0.28 -2.4 739,246 - MMJJ_RS03960 0.31 -0.2 739,246 - MMJJ_RS03960 0.31 -1.2 739,246 - MMJJ_RS03960 0.31 -1.1 739,247 + MMJJ_RS03960 0.32 +2.3 739,247 + MMJJ_RS03960 0.32 +0.9 739,250 + MMJJ_RS03960 0.32 -0.4 739,253 + MMJJ_RS03960 0.33 -0.2 739,254 - MMJJ_RS03960 0.33 -1.4 739,255 + MMJJ_RS03960 0.33 -1.6 739,255 + MMJJ_RS03960 0.33 +1.3 739,258 - MMJJ_RS03960 0.33 -0.4 739,258 - MMJJ_RS03960 0.33 -2.4 739,271 + MMJJ_RS03960 0.35 -1.5 739,271 + MMJJ_RS03960 0.35 -0.0 739,320 - MMJJ_RS03960 0.43 -2.5 739,326 + MMJJ_RS03960 0.44 -0.2 739,368 - MMJJ_RS03960 0.51 +1.0 739,382 + MMJJ_RS03960 0.53 -2.4 739,390 + MMJJ_RS03960 0.55 +1.0 739,436 + MMJJ_RS03960 0.62 +0.2 739,436 + MMJJ_RS03960 0.62 +0.6 739,466 - MMJJ_RS03960 0.67 +1.1 739,467 + MMJJ_RS03960 0.67 -1.9 739,467 + MMJJ_RS03960 0.67 -1.2 739,531 + MMJJ_RS03960 0.78 -1.1 739,531 + MMJJ_RS03960 0.78 -2.2 739,532 - MMJJ_RS03960 0.78 +1.4 739,532 - MMJJ_RS03960 0.78 -0.9 739,532 - MMJJ_RS03960 0.78 -3.9 739,532 - MMJJ_RS03960 0.78 -0.9 739,533 + MMJJ_RS03960 0.78 -2.1 739,533 + MMJJ_RS03960 0.78 +2.6 739,534 - MMJJ_RS03960 0.78 -1.4 739,536 - MMJJ_RS03960 0.78 -2.2 739,537 + MMJJ_RS03960 0.78 -2.5 739,537 + MMJJ_RS03960 0.78 +1.3 739,629 - -2.2 739,672 - -1.2 739,673 + +0.1 739,719 + MMJJ_RS03965 0.18 +1.4 739,719 + MMJJ_RS03965 0.18 -2.0 739,795 - +1.4 739,803 + MMJJ_RS03965 0.47 -0.6 739,952 - -1.2 739,954 - +0.8 739,967 + +1.4 739,969 + -1.9 739,976 - -1.3 739,977 + +3.1 740,053 - +2.4 740,054 + -1.3 740,057 - -0.2 740,057 - +0.4 740,058 + -0.2 740,075 - +0.4 740,120 + +0.4 740,515 - MMJJ_RS03970 0.59 +0.4 740,551 + -0.6
Or see this region's nucleotide sequence