Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03925 and MMJJ_RS03930 are separated by 13 nucleotides MMJJ_RS03930 and MMJJ_RS03935 are separated by 19 nucleotides MMJJ_RS03935 and MMJJ_RS03940 are separated by 39 nucleotides
MMJJ_RS03925: MMJJ_RS03925 - tRNA pseudouridine(38-40) synthase TruA, at 733,254 to 734,042
_RS03925
MMJJ_RS03930: MMJJ_RS03930 - hypothetical protein, at 734,056 to 734,772
_RS03930
MMJJ_RS03935: MMJJ_RS03935 - NAAT family transporter, at 734,792 to 735,433
_RS03935
MMJJ_RS03940: MMJJ_RS03940 - DMT family transporter, at 735,473 to 735,916
_RS03940
Position (kb) 734
735 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 733.096 kb on + strand at 733.104 kb on - strand at 733.104 kb on - strand at 733.105 kb on + strand at 733.105 kb on + strand at 733.130 kb on - strand at 733.143 kb on + strand at 733.149 kb on + strand at 733.176 kb on + strand at 733.183 kb on - strand at 733.184 kb on + strand at 733.184 kb on + strand at 733.188 kb on - strand at 733.188 kb on - strand at 733.188 kb on - strand at 733.189 kb on + strand at 733.189 kb on + strand at 733.190 kb on - strand at 733.190 kb on - strand at 733.191 kb on + strand at 733.191 kb on + strand at 733.192 kb on - strand at 733.193 kb on + strand at 733.193 kb on + strand at 733.193 kb on + strand at 733.193 kb on + strand at 733.193 kb on + strand at 733.193 kb on + strand at 733.193 kb on + strand at 733.193 kb on + strand at 733.193 kb on + strand at 733.193 kb on + strand at 733.194 kb on - strand at 733.194 kb on - strand at 733.194 kb on - strand at 733.194 kb on - strand at 733.194 kb on - strand at 733.194 kb on - strand at 733.194 kb on - strand at 733.194 kb on - strand at 733.195 kb on + strand at 733.195 kb on + strand at 733.195 kb on + strand at 733.195 kb on + strand at 733.195 kb on + strand at 733.195 kb on + strand at 733.200 kb on - strand at 733.206 kb on + strand at 733.239 kb on - strand at 733.242 kb on + strand at 733.251 kb on + strand at 733.251 kb on + strand at 733.253 kb on - strand at 733.253 kb on - strand at 733.253 kb on - strand at 733.253 kb on - strand at 733.253 kb on - strand at 733.254 kb on + strand at 733.254 kb on + strand at 733.254 kb on + strand at 733.254 kb on + strand at 733.254 kb on + strand at 733.254 kb on + strand at 733.254 kb on + strand at 733.254 kb on + strand at 733.254 kb on + strand at 733.257 kb on - strand at 733.257 kb on - strand at 733.257 kb on - strand at 733.257 kb on - strand at 733.257 kb on - strand at 733.257 kb on - strand at 733.257 kb on - strand at 733.258 kb on + strand at 733.261 kb on - strand at 733.261 kb on - strand at 733.261 kb on - strand at 733.262 kb on + strand at 733.262 kb on + strand at 733.262 kb on + strand at 733.276 kb on + strand at 733.276 kb on + strand at 733.364 kb on + strand, within MMJJ_RS03925 at 733.364 kb on + strand, within MMJJ_RS03925 at 733.364 kb on + strand, within MMJJ_RS03925 at 733.377 kb on + strand, within MMJJ_RS03925 at 733.389 kb on - strand, within MMJJ_RS03925 at 733.389 kb on - strand, within MMJJ_RS03925 at 733.390 kb on + strand, within MMJJ_RS03925 at 733.390 kb on + strand, within MMJJ_RS03925 at 733.418 kb on + strand, within MMJJ_RS03925 at 733.438 kb on - strand, within MMJJ_RS03925 at 733.438 kb on - strand, within MMJJ_RS03925 at 733.438 kb on - strand, within MMJJ_RS03925 at 733.439 kb on + strand, within MMJJ_RS03925 at 733.439 kb on + strand, within MMJJ_RS03925 at 733.439 kb on + strand, within MMJJ_RS03925 at 733.443 kb on - strand, within MMJJ_RS03925 at 733.444 kb on + strand, within MMJJ_RS03925 at 733.444 kb on + strand, within MMJJ_RS03925 at 733.490 kb on - strand, within MMJJ_RS03925 at 733.490 kb on - strand, within MMJJ_RS03925 at 733.551 kb on - strand, within MMJJ_RS03925 at 733.566 kb on - strand, within MMJJ_RS03925 at 733.568 kb on - strand, within MMJJ_RS03925 at 733.568 kb on - strand, within MMJJ_RS03925 at 733.569 kb on + strand, within MMJJ_RS03925 at 733.601 kb on + strand, within MMJJ_RS03925 at 733.601 kb on + strand, within MMJJ_RS03925 at 733.638 kb on - strand, within MMJJ_RS03925 at 733.639 kb on + strand, within MMJJ_RS03925 at 733.675 kb on - strand at 733.744 kb on - strand, within MMJJ_RS03925 at 733.744 kb on - strand, within MMJJ_RS03925 at 733.745 kb on + strand, within MMJJ_RS03925 at 733.745 kb on + strand, within MMJJ_RS03925 at 733.775 kb on - strand, within MMJJ_RS03925 at 733.776 kb on + strand, within MMJJ_RS03925 at 733.784 kb on - strand, within MMJJ_RS03925 at 733.786 kb on - strand, within MMJJ_RS03925 at 733.786 kb on - strand, within MMJJ_RS03925 at 733.847 kb on + strand, within MMJJ_RS03925 at 733.847 kb on + strand, within MMJJ_RS03925 at 733.847 kb on + strand, within MMJJ_RS03925 at 733.903 kb on - strand, within MMJJ_RS03925 at 733.903 kb on - strand, within MMJJ_RS03925 at 733.903 kb on - strand, within MMJJ_RS03925 at 733.944 kb on + strand, within MMJJ_RS03925 at 733.947 kb on - strand, within MMJJ_RS03925 at 733.947 kb on - strand, within MMJJ_RS03925 at 733.948 kb on + strand, within MMJJ_RS03925 at 733.948 kb on + strand, within MMJJ_RS03925 at 733.948 kb on + strand, within MMJJ_RS03925 at 734.052 kb on - strand at 734.062 kb on - strand at 734.062 kb on - strand at 734.062 kb on - strand at 734.062 kb on - strand at 734.062 kb on - strand at 734.062 kb on - strand at 734.062 kb on - strand at 734.063 kb on + strand at 734.063 kb on + strand at 734.063 kb on + strand at 734.063 kb on + strand at 734.063 kb on + strand at 734.076 kb on + strand at 734.076 kb on + strand at 734.087 kb on - strand at 734.088 kb on + strand at 734.088 kb on + strand at 734.109 kb on - strand at 734.150 kb on - strand, within MMJJ_RS03930 at 734.171 kb on - strand, within MMJJ_RS03930 at 734.185 kb on + strand, within MMJJ_RS03930 at 734.185 kb on + strand, within MMJJ_RS03930 at 734.185 kb on + strand, within MMJJ_RS03930 at 734.211 kb on + strand, within MMJJ_RS03930 at 734.270 kb on - strand, within MMJJ_RS03930 at 734.275 kb on - strand, within MMJJ_RS03930 at 734.316 kb on - strand, within MMJJ_RS03930 at 734.317 kb on + strand, within MMJJ_RS03930 at 734.350 kb on - strand, within MMJJ_RS03930 at 734.351 kb on + strand, within MMJJ_RS03930 at 734.406 kb on - strand, within MMJJ_RS03930 at 734.410 kb on - strand, within MMJJ_RS03930 at 734.410 kb on - strand, within MMJJ_RS03930 at 734.411 kb on + strand, within MMJJ_RS03930 at 734.411 kb on + strand, within MMJJ_RS03930 at 734.411 kb on + strand, within MMJJ_RS03930 at 734.444 kb on - strand, within MMJJ_RS03930 at 734.444 kb on - strand, within MMJJ_RS03930 at 734.444 kb on - strand, within MMJJ_RS03930 at 734.444 kb on - strand, within MMJJ_RS03930 at 734.476 kb on - strand, within MMJJ_RS03930 at 734.544 kb on - strand, within MMJJ_RS03930 at 734.545 kb on + strand, within MMJJ_RS03930 at 734.644 kb on - strand, within MMJJ_RS03930 at 734.645 kb on + strand, within MMJJ_RS03930 at 734.673 kb on - strand, within MMJJ_RS03930 at 734.673 kb on - strand, within MMJJ_RS03930 at 734.673 kb on - strand, within MMJJ_RS03930 at 734.674 kb on + strand, within MMJJ_RS03930 at 734.675 kb on - strand, within MMJJ_RS03930 at 734.675 kb on - strand, within MMJJ_RS03930 at 734.676 kb on + strand, within MMJJ_RS03930 at 734.696 kb on + strand, within MMJJ_RS03930 at 734.697 kb on - strand, within MMJJ_RS03930 at 734.770 kb on - strand at 734.770 kb on - strand at 734.771 kb on + strand at 734.771 kb on + strand at 734.791 kb on - strand at 734.800 kb on + strand at 734.807 kb on + strand at 734.868 kb on + strand, within MMJJ_RS03935 at 734.871 kb on - strand, within MMJJ_RS03935 at 734.871 kb on - strand, within MMJJ_RS03935 at 734.872 kb on + strand, within MMJJ_RS03935 at 734.881 kb on - strand, within MMJJ_RS03935 at 734.888 kb on - strand, within MMJJ_RS03935 at 734.920 kb on - strand, within MMJJ_RS03935 at 734.920 kb on - strand, within MMJJ_RS03935 at 734.921 kb on + strand, within MMJJ_RS03935 at 734.926 kb on - strand, within MMJJ_RS03935 at 734.927 kb on + strand, within MMJJ_RS03935 at 734.949 kb on - strand, within MMJJ_RS03935 at 734.949 kb on - strand, within MMJJ_RS03935 at 734.950 kb on + strand, within MMJJ_RS03935 at 734.950 kb on + strand, within MMJJ_RS03935 at 734.950 kb on + strand, within MMJJ_RS03935 at 735.037 kb on + strand, within MMJJ_RS03935 at 735.037 kb on + strand, within MMJJ_RS03935 at 735.043 kb on + strand, within MMJJ_RS03935 at 735.043 kb on + strand, within MMJJ_RS03935 at 735.055 kb on - strand, within MMJJ_RS03935 at 735.055 kb on - strand, within MMJJ_RS03935 at 735.056 kb on + strand, within MMJJ_RS03935 at 735.157 kb on + strand, within MMJJ_RS03935 at 735.157 kb on + strand, within MMJJ_RS03935 at 735.157 kb on + strand, within MMJJ_RS03935 at 735.159 kb on - strand, within MMJJ_RS03935 at 735.177 kb on - strand, within MMJJ_RS03935 at 735.181 kb on + strand, within MMJJ_RS03935 at 735.229 kb on - strand, within MMJJ_RS03935 at 735.259 kb on + strand, within MMJJ_RS03935 at 735.279 kb on - strand, within MMJJ_RS03935 at 735.280 kb on + strand, within MMJJ_RS03935 at 735.280 kb on + strand, within MMJJ_RS03935 at 735.283 kb on - strand, within MMJJ_RS03935 at 735.283 kb on - strand, within MMJJ_RS03935 at 735.285 kb on - strand, within MMJJ_RS03935 at 735.290 kb on - strand, within MMJJ_RS03935 at 735.291 kb on + strand, within MMJJ_RS03935 at 735.375 kb on - strand at 735.388 kb on + strand at 735.522 kb on + strand, within MMJJ_RS03940 at 735.644 kb on - strand, within MMJJ_RS03940 at 735.647 kb on - strand, within MMJJ_RS03940 at 735.648 kb on + strand, within MMJJ_RS03940 at 735.654 kb on + strand, within MMJJ_RS03940 at 735.671 kb on + strand, within MMJJ_RS03940 at 735.671 kb on + strand, within MMJJ_RS03940 at 735.675 kb on + strand, within MMJJ_RS03940 at 735.675 kb on + strand, within MMJJ_RS03940 at 735.692 kb on - strand, within MMJJ_RS03940 at 735.699 kb on - strand, within MMJJ_RS03940 at 735.700 kb on + strand, within MMJJ_RS03940 at 735.711 kb on + strand, within MMJJ_RS03940 at 735.720 kb on + strand, within MMJJ_RS03940 at 735.736 kb on - strand, within MMJJ_RS03940 at 735.759 kb on + strand, within MMJJ_RS03940 at 735.764 kb on - strand, within MMJJ_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 733,096 + +0.2 733,104 - +1.3 733,104 - +1.6 733,105 + +1.6 733,105 + +2.4 733,130 - -1.4 733,143 + +0.4 733,149 + -1.3 733,176 + +3.3 733,183 - -0.8 733,184 + -0.4 733,184 + +3.0 733,188 - +0.8 733,188 - +1.3 733,188 - -0.5 733,189 + +0.4 733,189 + +3.0 733,190 - -0.8 733,190 - -1.5 733,191 + +2.1 733,191 + -2.0 733,192 - -2.0 733,193 + +3.0 733,193 + +2.4 733,193 + +0.9 733,193 + +1.4 733,193 + -0.2 733,193 + -0.3 733,193 + +0.7 733,193 + -0.9 733,193 + -0.7 733,193 + +2.9 733,194 - -2.1 733,194 - -2.1 733,194 - -0.5 733,194 - +0.7 733,194 - +0.9 733,194 - -0.2 733,194 - -3.2 733,194 - -1.5 733,195 + +1.9 733,195 + +1.7 733,195 + -0.2 733,195 + -0.6 733,195 + +0.1 733,195 + +2.6 733,200 - +1.1 733,206 + -0.3 733,239 - +1.8 733,242 + -3.6 733,251 + -0.3 733,251 + -0.0 733,253 - -1.3 733,253 - -0.9 733,253 - +0.6 733,253 - -2.2 733,253 - +0.4 733,254 + +0.5 733,254 + +0.3 733,254 + -2.6 733,254 + -2.6 733,254 + -1.9 733,254 + +2.1 733,254 + -1.4 733,254 + -2.1 733,254 + -3.1 733,257 - +6.3 733,257 - +1.7 733,257 - -2.4 733,257 - -1.8 733,257 - -2.0 733,257 - -2.1 733,257 - +3.4 733,258 + +1.0 733,261 - +1.2 733,261 - +3.1 733,261 - +0.4 733,262 + +0.6 733,262 + +4.5 733,262 + -1.2 733,276 + +1.1 733,276 + +0.4 733,364 + MMJJ_RS03925 0.14 -0.9 733,364 + MMJJ_RS03925 0.14 -3.4 733,364 + MMJJ_RS03925 0.14 +0.3 733,377 + MMJJ_RS03925 0.16 +1.2 733,389 - MMJJ_RS03925 0.17 +3.0 733,389 - MMJJ_RS03925 0.17 +0.4 733,390 + MMJJ_RS03925 0.17 -1.5 733,390 + MMJJ_RS03925 0.17 +1.1 733,418 + MMJJ_RS03925 0.21 +0.4 733,438 - MMJJ_RS03925 0.23 +0.6 733,438 - MMJJ_RS03925 0.23 -1.9 733,438 - MMJJ_RS03925 0.23 -1.8 733,439 + MMJJ_RS03925 0.23 +1.2 733,439 + MMJJ_RS03925 0.23 -2.3 733,439 + MMJJ_RS03925 0.23 -1.6 733,443 - MMJJ_RS03925 0.24 -0.5 733,444 + MMJJ_RS03925 0.24 -1.2 733,444 + MMJJ_RS03925 0.24 -1.7 733,490 - MMJJ_RS03925 0.30 -2.3 733,490 - MMJJ_RS03925 0.30 -2.4 733,551 - MMJJ_RS03925 0.38 -0.9 733,566 - MMJJ_RS03925 0.40 +0.3 733,568 - MMJJ_RS03925 0.40 -2.7 733,568 - MMJJ_RS03925 0.40 -1.1 733,569 + MMJJ_RS03925 0.40 +2.2 733,601 + MMJJ_RS03925 0.44 +0.6 733,601 + MMJJ_RS03925 0.44 +0.6 733,638 - MMJJ_RS03925 0.49 +2.9 733,639 + MMJJ_RS03925 0.49 -2.8 733,675 - -0.9 733,744 - MMJJ_RS03925 0.62 -0.5 733,744 - MMJJ_RS03925 0.62 -1.9 733,745 + MMJJ_RS03925 0.62 +2.1 733,745 + MMJJ_RS03925 0.62 -3.0 733,775 - MMJJ_RS03925 0.66 -1.9 733,776 + MMJJ_RS03925 0.66 -2.9 733,784 - MMJJ_RS03925 0.67 -0.4 733,786 - MMJJ_RS03925 0.67 +0.1 733,786 - MMJJ_RS03925 0.67 -1.1 733,847 + MMJJ_RS03925 0.75 -2.8 733,847 + MMJJ_RS03925 0.75 -0.2 733,847 + MMJJ_RS03925 0.75 -3.5 733,903 - MMJJ_RS03925 0.82 +1.8 733,903 - MMJJ_RS03925 0.82 -0.7 733,903 - MMJJ_RS03925 0.82 -2.6 733,944 + MMJJ_RS03925 0.87 +0.6 733,947 - MMJJ_RS03925 0.88 -2.9 733,947 - MMJJ_RS03925 0.88 +0.3 733,948 + MMJJ_RS03925 0.88 -0.4 733,948 + MMJJ_RS03925 0.88 -1.4 733,948 + MMJJ_RS03925 0.88 +2.4 734,052 - -3.1 734,062 - -2.8 734,062 - -2.3 734,062 - +3.7 734,062 - +0.4 734,062 - -2.0 734,062 - +1.4 734,062 - -0.1 734,063 + -3.1 734,063 + -2.3 734,063 + -0.8 734,063 + -3.3 734,063 + -1.3 734,076 + +0.8 734,076 + -2.3 734,087 - -2.1 734,088 + -3.0 734,088 + -0.0 734,109 - +0.0 734,150 - MMJJ_RS03930 0.13 -0.2 734,171 - MMJJ_RS03930 0.16 -1.0 734,185 + MMJJ_RS03930 0.18 -0.8 734,185 + MMJJ_RS03930 0.18 -1.4 734,185 + MMJJ_RS03930 0.18 -2.0 734,211 + MMJJ_RS03930 0.22 -3.1 734,270 - MMJJ_RS03930 0.30 -0.1 734,275 - MMJJ_RS03930 0.31 -1.7 734,316 - MMJJ_RS03930 0.36 -1.5 734,317 + MMJJ_RS03930 0.36 +0.1 734,350 - MMJJ_RS03930 0.41 -2.2 734,351 + MMJJ_RS03930 0.41 +0.7 734,406 - MMJJ_RS03930 0.49 +0.4 734,410 - MMJJ_RS03930 0.49 -1.3 734,410 - MMJJ_RS03930 0.49 -0.6 734,411 + MMJJ_RS03930 0.50 +0.4 734,411 + MMJJ_RS03930 0.50 -0.4 734,411 + MMJJ_RS03930 0.50 -1.8 734,444 - MMJJ_RS03930 0.54 -1.4 734,444 - MMJJ_RS03930 0.54 -1.5 734,444 - MMJJ_RS03930 0.54 -0.3 734,444 - MMJJ_RS03930 0.54 -0.4 734,476 - MMJJ_RS03930 0.59 -1.4 734,544 - MMJJ_RS03930 0.68 -2.1 734,545 + MMJJ_RS03930 0.68 -3.5 734,644 - MMJJ_RS03930 0.82 -1.2 734,645 + MMJJ_RS03930 0.82 -2.6 734,673 - MMJJ_RS03930 0.86 -0.5 734,673 - MMJJ_RS03930 0.86 -0.0 734,673 - MMJJ_RS03930 0.86 -2.3 734,674 + MMJJ_RS03930 0.86 -0.2 734,675 - MMJJ_RS03930 0.86 -0.4 734,675 - MMJJ_RS03930 0.86 -2.1 734,676 + MMJJ_RS03930 0.86 -3.0 734,696 + MMJJ_RS03930 0.89 -0.3 734,697 - MMJJ_RS03930 0.89 -3.9 734,770 - -0.2 734,770 - +1.4 734,771 + -2.1 734,771 + -2.5 734,791 - +1.4 734,800 + -1.6 734,807 + +2.3 734,868 + MMJJ_RS03935 0.12 -0.5 734,871 - MMJJ_RS03935 0.12 +2.5 734,871 - MMJJ_RS03935 0.12 -0.3 734,872 + MMJJ_RS03935 0.12 +2.0 734,881 - MMJJ_RS03935 0.14 -0.9 734,888 - MMJJ_RS03935 0.15 -3.7 734,920 - MMJJ_RS03935 0.20 -0.6 734,920 - MMJJ_RS03935 0.20 +0.2 734,921 + MMJJ_RS03935 0.20 +1.9 734,926 - MMJJ_RS03935 0.21 -0.9 734,927 + MMJJ_RS03935 0.21 -2.9 734,949 - MMJJ_RS03935 0.24 -1.6 734,949 - MMJJ_RS03935 0.24 +2.4 734,950 + MMJJ_RS03935 0.25 -2.6 734,950 + MMJJ_RS03935 0.25 -2.2 734,950 + MMJJ_RS03935 0.25 -2.0 735,037 + MMJJ_RS03935 0.38 -0.7 735,037 + MMJJ_RS03935 0.38 -2.2 735,043 + MMJJ_RS03935 0.39 +0.1 735,043 + MMJJ_RS03935 0.39 -1.2 735,055 - MMJJ_RS03935 0.41 -0.6 735,055 - MMJJ_RS03935 0.41 +1.8 735,056 + MMJJ_RS03935 0.41 +0.9 735,157 + MMJJ_RS03935 0.57 -1.0 735,157 + MMJJ_RS03935 0.57 +2.8 735,157 + MMJJ_RS03935 0.57 -1.9 735,159 - MMJJ_RS03935 0.57 +0.8 735,177 - MMJJ_RS03935 0.60 +1.5 735,181 + MMJJ_RS03935 0.61 -3.2 735,229 - MMJJ_RS03935 0.68 -0.2 735,259 + MMJJ_RS03935 0.73 -2.7 735,279 - MMJJ_RS03935 0.76 +0.0 735,280 + MMJJ_RS03935 0.76 +1.9 735,280 + MMJJ_RS03935 0.76 +2.5 735,283 - MMJJ_RS03935 0.76 -0.6 735,283 - MMJJ_RS03935 0.76 -0.4 735,285 - MMJJ_RS03935 0.77 +0.4 735,290 - MMJJ_RS03935 0.78 +1.4 735,291 + MMJJ_RS03935 0.78 +1.1 735,375 - +0.8 735,388 + -1.1 735,522 + MMJJ_RS03940 0.11 +0.7 735,644 - MMJJ_RS03940 0.39 +1.7 735,647 - MMJJ_RS03940 0.39 -1.4 735,648 + MMJJ_RS03940 0.39 -0.7 735,654 + MMJJ_RS03940 0.41 -0.7 735,671 + MMJJ_RS03940 0.45 -1.6 735,671 + MMJJ_RS03940 0.45 +0.2 735,675 + MMJJ_RS03940 0.45 +3.6 735,675 + MMJJ_RS03940 0.45 +2.6 735,692 - MMJJ_RS03940 0.49 -2.2 735,699 - MMJJ_RS03940 0.51 +1.1 735,700 + MMJJ_RS03940 0.51 -2.3 735,711 + MMJJ_RS03940 0.54 +5.2 735,720 + MMJJ_RS03940 0.56 +1.2 735,736 - MMJJ_RS03940 0.59 +0.6 735,759 + MMJJ_RS03940 0.64 -0.3 735,764 - MMJJ_RS03940 0.66 -2.5
Or see this region's nucleotide sequence