Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03900 and MMJJ_RS03905 are separated by 18 nucleotides MMJJ_RS03905 and MMJJ_RS03910 are separated by 25 nucleotides MMJJ_RS03910 and MMJJ_RS03915 are separated by 1 nucleotides MMJJ_RS03915 and MMJJ_RS03920 are separated by 9 nucleotides
MMJJ_RS03900: MMJJ_RS03900 - phosphosulfolactate synthase, at 728,823 to 729,578
_RS03900
MMJJ_RS03905: MMJJ_RS03905 - ATP-binding cassette domain-containing protein, at 729,597 to 730,388
_RS03905
MMJJ_RS03910: MMJJ_RS03910 - hypothetical protein, at 730,414 to 731,112
_RS03910
MMJJ_RS03915: MMJJ_RS03915 - hypothetical protein, at 731,114 to 731,773
_RS03915
MMJJ_RS03920: MMJJ_RS03920 - nickel pincer cofactor biosynthesis protein LarC, at 731,783 to 732,997
_RS03920
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 729.427 kb on - strand, within MMJJ_RS03900 at 729.468 kb on + strand, within MMJJ_RS03900 at 729.468 kb on + strand, within MMJJ_RS03900 at 729.469 kb on - strand, within MMJJ_RS03900 at 729.472 kb on - strand, within MMJJ_RS03900 at 729.473 kb on + strand, within MMJJ_RS03900 at 729.503 kb on - strand at 729.504 kb on + strand at 729.504 kb on + strand at 729.580 kb on - strand at 729.620 kb on - strand at 729.667 kb on - strand at 729.667 kb on - strand at 729.667 kb on - strand at 729.668 kb on + strand at 729.668 kb on + strand at 729.668 kb on + strand at 729.668 kb on + strand at 729.673 kb on - strand at 729.864 kb on + strand, within MMJJ_RS03905 at 729.882 kb on + strand, within MMJJ_RS03905 at 729.965 kb on + strand, within MMJJ_RS03905 at 730.009 kb on - strand, within MMJJ_RS03905 at 730.016 kb on + strand, within MMJJ_RS03905 at 730.016 kb on + strand, within MMJJ_RS03905 at 730.087 kb on - strand, within MMJJ_RS03905 at 730.169 kb on + strand, within MMJJ_RS03905 at 730.172 kb on - strand, within MMJJ_RS03905 at 730.173 kb on + strand, within MMJJ_RS03905 at 730.173 kb on + strand, within MMJJ_RS03905 at 730.360 kb on - strand at 730.360 kb on - strand at 730.386 kb on - strand at 730.387 kb on + strand at 730.472 kb on - strand at 730.484 kb on - strand, within MMJJ_RS03910 at 730.484 kb on - strand, within MMJJ_RS03910 at 730.512 kb on - strand, within MMJJ_RS03910 at 730.527 kb on + strand, within MMJJ_RS03910 at 730.528 kb on - strand at 730.529 kb on + strand, within MMJJ_RS03910 at 730.529 kb on + strand, within MMJJ_RS03910 at 730.529 kb on + strand, within MMJJ_RS03910 at 730.530 kb on - strand, within MMJJ_RS03910 at 730.530 kb on - strand, within MMJJ_RS03910 at 730.583 kb on - strand, within MMJJ_RS03910 at 730.588 kb on + strand, within MMJJ_RS03910 at 730.588 kb on + strand, within MMJJ_RS03910 at 730.588 kb on + strand, within MMJJ_RS03910 at 730.588 kb on + strand, within MMJJ_RS03910 at 730.593 kb on - strand, within MMJJ_RS03910 at 730.594 kb on + strand, within MMJJ_RS03910 at 730.594 kb on + strand, within MMJJ_RS03910 at 730.594 kb on + strand, within MMJJ_RS03910 at 730.618 kb on - strand, within MMJJ_RS03910 at 730.621 kb on + strand, within MMJJ_RS03910 at 730.670 kb on - strand, within MMJJ_RS03910 at 730.671 kb on + strand, within MMJJ_RS03910 at 730.671 kb on + strand, within MMJJ_RS03910 at 730.671 kb on + strand, within MMJJ_RS03910 at 730.764 kb on - strand, within MMJJ_RS03910 at 730.815 kb on + strand, within MMJJ_RS03910 at 730.818 kb on - strand, within MMJJ_RS03910 at 730.818 kb on - strand, within MMJJ_RS03910 at 730.818 kb on - strand, within MMJJ_RS03910 at 730.819 kb on + strand, within MMJJ_RS03910 at 730.827 kb on - strand, within MMJJ_RS03910 at 730.827 kb on - strand, within MMJJ_RS03910 at 730.827 kb on - strand, within MMJJ_RS03910 at 730.830 kb on - strand, within MMJJ_RS03910 at 730.830 kb on - strand, within MMJJ_RS03910 at 730.830 kb on - strand, within MMJJ_RS03910 at 730.830 kb on - strand, within MMJJ_RS03910 at 730.831 kb on + strand, within MMJJ_RS03910 at 730.831 kb on + strand, within MMJJ_RS03910 at 730.831 kb on + strand, within MMJJ_RS03910 at 730.833 kb on + strand, within MMJJ_RS03910 at 730.833 kb on + strand, within MMJJ_RS03910 at 730.833 kb on + strand, within MMJJ_RS03910 at 730.833 kb on + strand, within MMJJ_RS03910 at 730.853 kb on - strand, within MMJJ_RS03910 at 730.890 kb on - strand, within MMJJ_RS03910 at 730.891 kb on + strand, within MMJJ_RS03910 at 730.893 kb on - strand, within MMJJ_RS03910 at 730.893 kb on - strand, within MMJJ_RS03910 at 730.894 kb on + strand, within MMJJ_RS03910 at 730.894 kb on + strand, within MMJJ_RS03910 at 730.895 kb on - strand, within MMJJ_RS03910 at 730.895 kb on - strand, within MMJJ_RS03910 at 730.895 kb on - strand, within MMJJ_RS03910 at 730.897 kb on - strand, within MMJJ_RS03910 at 730.897 kb on - strand, within MMJJ_RS03910 at 730.897 kb on - strand, within MMJJ_RS03910 at 730.897 kb on - strand, within MMJJ_RS03910 at 730.897 kb on - strand, within MMJJ_RS03910 at 730.898 kb on + strand, within MMJJ_RS03910 at 730.898 kb on + strand, within MMJJ_RS03910 at 730.905 kb on + strand, within MMJJ_RS03910 at 730.949 kb on - strand, within MMJJ_RS03910 at 731.099 kb on + strand at 731.135 kb on + strand at 731.153 kb on - strand at 731.242 kb on + strand, within MMJJ_RS03915 at 731.267 kb on + strand, within MMJJ_RS03915 at 731.355 kb on - strand, within MMJJ_RS03915 at 731.531 kb on - strand, within MMJJ_RS03915 at 731.539 kb on + strand, within MMJJ_RS03915 at 731.586 kb on + strand, within MMJJ_RS03915 at 731.586 kb on + strand, within MMJJ_RS03915 at 731.632 kb on - strand, within MMJJ_RS03915 at 731.638 kb on - strand, within MMJJ_RS03915 at 731.686 kb on - strand, within MMJJ_RS03915 at 731.686 kb on - strand, within MMJJ_RS03915 at 731.687 kb on + strand, within MMJJ_RS03915 at 731.687 kb on + strand, within MMJJ_RS03915 at 731.766 kb on - strand at 731.767 kb on + strand at 731.767 kb on + strand at 731.767 kb on + strand at 731.771 kb on - strand at 731.774 kb on - strand at 731.774 kb on - strand at 731.774 kb on - strand at 731.775 kb on + strand at 731.775 kb on + strand at 731.775 kb on + strand at 731.775 kb on + strand at 731.775 kb on + strand at 731.775 kb on + strand at 731.777 kb on - strand at 731.778 kb on + strand at 731.778 kb on + strand at 731.779 kb on - strand at 731.780 kb on + strand at 731.780 kb on + strand at 731.780 kb on + strand at 731.784 kb on - strand at 731.785 kb on + strand at 731.785 kb on + strand at 731.794 kb on + strand at 731.804 kb on - strand at 731.810 kb on + strand at 731.810 kb on + strand at 731.812 kb on - strand at 731.893 kb on - strand at 731.893 kb on - strand at 731.894 kb on + strand at 731.954 kb on - strand, within MMJJ_RS03920 at 731.955 kb on + strand, within MMJJ_RS03920 at 731.955 kb on + strand, within MMJJ_RS03920 at 731.994 kb on + strand, within MMJJ_RS03920 at 732.044 kb on - strand, within MMJJ_RS03920 at 732.084 kb on + strand, within MMJJ_RS03920 at 732.084 kb on + strand, within MMJJ_RS03920 at 732.084 kb on + strand, within MMJJ_RS03920
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 729,427 - MMJJ_RS03900 0.80 -3.5 729,468 + MMJJ_RS03900 0.85 +4.8 729,468 + MMJJ_RS03900 0.85 +0.1 729,469 - MMJJ_RS03900 0.85 -0.3 729,472 - MMJJ_RS03900 0.86 +2.1 729,473 + MMJJ_RS03900 0.86 +0.3 729,503 - +2.8 729,504 + +1.9 729,504 + +0.2 729,580 - -2.4 729,620 - -1.0 729,667 - +3.2 729,667 - -3.2 729,667 - +2.7 729,668 + +1.7 729,668 + +2.8 729,668 + +1.4 729,668 + -2.2 729,673 - +3.3 729,864 + MMJJ_RS03905 0.34 -0.4 729,882 + MMJJ_RS03905 0.36 -0.6 729,965 + MMJJ_RS03905 0.46 +1.7 730,009 - MMJJ_RS03905 0.52 -0.8 730,016 + MMJJ_RS03905 0.53 +0.4 730,016 + MMJJ_RS03905 0.53 +0.7 730,087 - MMJJ_RS03905 0.62 +1.1 730,169 + MMJJ_RS03905 0.72 -1.9 730,172 - MMJJ_RS03905 0.73 -0.2 730,173 + MMJJ_RS03905 0.73 +0.1 730,173 + MMJJ_RS03905 0.73 -2.2 730,360 - -1.0 730,360 - +0.5 730,386 - +1.4 730,387 + -3.4 730,472 - +0.1 730,484 - MMJJ_RS03910 0.10 +1.4 730,484 - MMJJ_RS03910 0.10 +2.4 730,512 - MMJJ_RS03910 0.14 -0.4 730,527 + MMJJ_RS03910 0.16 -1.1 730,528 - -0.2 730,529 + MMJJ_RS03910 0.16 -0.2 730,529 + MMJJ_RS03910 0.16 -1.3 730,529 + MMJJ_RS03910 0.16 +4.6 730,530 - MMJJ_RS03910 0.17 +1.5 730,530 - MMJJ_RS03910 0.17 -1.7 730,583 - MMJJ_RS03910 0.24 +1.0 730,588 + MMJJ_RS03910 0.25 -1.5 730,588 + MMJJ_RS03910 0.25 +0.9 730,588 + MMJJ_RS03910 0.25 +0.5 730,588 + MMJJ_RS03910 0.25 -1.6 730,593 - MMJJ_RS03910 0.26 +3.8 730,594 + MMJJ_RS03910 0.26 +2.1 730,594 + MMJJ_RS03910 0.26 -1.2 730,594 + MMJJ_RS03910 0.26 +2.0 730,618 - MMJJ_RS03910 0.29 -3.1 730,621 + MMJJ_RS03910 0.30 +0.9 730,670 - MMJJ_RS03910 0.37 +4.6 730,671 + MMJJ_RS03910 0.37 -0.6 730,671 + MMJJ_RS03910 0.37 +2.2 730,671 + MMJJ_RS03910 0.37 -1.8 730,764 - MMJJ_RS03910 0.50 +0.8 730,815 + MMJJ_RS03910 0.57 -2.1 730,818 - MMJJ_RS03910 0.58 +2.6 730,818 - MMJJ_RS03910 0.58 +2.2 730,818 - MMJJ_RS03910 0.58 -0.5 730,819 + MMJJ_RS03910 0.58 +1.6 730,827 - MMJJ_RS03910 0.59 +1.1 730,827 - MMJJ_RS03910 0.59 +1.3 730,827 - MMJJ_RS03910 0.59 -2.0 730,830 - MMJJ_RS03910 0.60 -3.2 730,830 - MMJJ_RS03910 0.60 +1.0 730,830 - MMJJ_RS03910 0.60 +2.0 730,830 - MMJJ_RS03910 0.60 +1.5 730,831 + MMJJ_RS03910 0.60 -0.6 730,831 + MMJJ_RS03910 0.60 -1.4 730,831 + MMJJ_RS03910 0.60 +0.4 730,833 + MMJJ_RS03910 0.60 +1.4 730,833 + MMJJ_RS03910 0.60 +0.3 730,833 + MMJJ_RS03910 0.60 +1.3 730,833 + MMJJ_RS03910 0.60 +0.8 730,853 - MMJJ_RS03910 0.63 +0.4 730,890 - MMJJ_RS03910 0.68 -0.6 730,891 + MMJJ_RS03910 0.68 +2.2 730,893 - MMJJ_RS03910 0.69 +1.3 730,893 - MMJJ_RS03910 0.69 -0.0 730,894 + MMJJ_RS03910 0.69 +1.6 730,894 + MMJJ_RS03910 0.69 +0.4 730,895 - MMJJ_RS03910 0.69 -0.2 730,895 - MMJJ_RS03910 0.69 -1.0 730,895 - MMJJ_RS03910 0.69 +1.1 730,897 - MMJJ_RS03910 0.69 -0.9 730,897 - MMJJ_RS03910 0.69 -2.7 730,897 - MMJJ_RS03910 0.69 +1.7 730,897 - MMJJ_RS03910 0.69 -3.4 730,897 - MMJJ_RS03910 0.69 -0.6 730,898 + MMJJ_RS03910 0.69 +0.9 730,898 + MMJJ_RS03910 0.69 +0.6 730,905 + MMJJ_RS03910 0.70 -3.4 730,949 - MMJJ_RS03910 0.77 -2.5 731,099 + -0.2 731,135 + -1.6 731,153 - -0.4 731,242 + MMJJ_RS03915 0.19 -1.7 731,267 + MMJJ_RS03915 0.23 +1.0 731,355 - MMJJ_RS03915 0.37 -0.5 731,531 - MMJJ_RS03915 0.63 +0.5 731,539 + MMJJ_RS03915 0.64 -1.7 731,586 + MMJJ_RS03915 0.72 -2.2 731,586 + MMJJ_RS03915 0.72 -0.2 731,632 - MMJJ_RS03915 0.78 -2.1 731,638 - MMJJ_RS03915 0.79 -0.3 731,686 - MMJJ_RS03915 0.87 -0.2 731,686 - MMJJ_RS03915 0.87 +0.0 731,687 + MMJJ_RS03915 0.87 +1.0 731,687 + MMJJ_RS03915 0.87 +1.5 731,766 - -0.3 731,767 + +0.1 731,767 + +1.1 731,767 + -1.1 731,771 - +3.4 731,774 - +1.7 731,774 - +1.4 731,774 - -1.3 731,775 + -1.6 731,775 + +1.6 731,775 + +1.5 731,775 + +1.0 731,775 + -1.5 731,775 + -0.7 731,777 - -0.2 731,778 + -1.6 731,778 + +0.3 731,779 - +2.5 731,780 + -2.2 731,780 + -1.1 731,780 + +1.4 731,784 - -2.6 731,785 + -1.2 731,785 + -0.3 731,794 + +1.4 731,804 - -2.5 731,810 + -2.6 731,810 + -2.7 731,812 - +0.4 731,893 - +0.0 731,893 - -1.5 731,894 + -1.4 731,954 - MMJJ_RS03920 0.14 -2.6 731,955 + MMJJ_RS03920 0.14 -1.5 731,955 + MMJJ_RS03920 0.14 -1.6 731,994 + MMJJ_RS03920 0.17 -2.9 732,044 - MMJJ_RS03920 0.21 -2.9 732,084 + MMJJ_RS03920 0.25 -0.9 732,084 + MMJJ_RS03920 0.25 -1.9 732,084 + MMJJ_RS03920 0.25 -3.1
Or see this region's nucleotide sequence