Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03895 and MMJJ_RS03900 are separated by 211 nucleotides MMJJ_RS03900 and MMJJ_RS03905 are separated by 18 nucleotides MMJJ_RS03905 and MMJJ_RS03910 are separated by 25 nucleotides
MMJJ_RS03895: MMJJ_RS03895 - hydrogenase expression/formation protein HypE, at 727,607 to 728,611
_RS03895
MMJJ_RS03900: MMJJ_RS03900 - phosphosulfolactate synthase, at 728,823 to 729,578
_RS03900
MMJJ_RS03905: MMJJ_RS03905 - ATP-binding cassette domain-containing protein, at 729,597 to 730,388
_RS03905
MMJJ_RS03910: MMJJ_RS03910 - hypothetical protein, at 730,414 to 731,112
_RS03910
Position (kb) 728
729
730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 727.899 kb on + strand, within MMJJ_RS03895 at 727.925 kb on - strand, within MMJJ_RS03895 at 728.077 kb on - strand, within MMJJ_RS03895 at 728.231 kb on - strand, within MMJJ_RS03895 at 728.231 kb on - strand, within MMJJ_RS03895 at 728.427 kb on + strand, within MMJJ_RS03895 at 728.471 kb on + strand, within MMJJ_RS03895 at 728.535 kb on + strand at 728.629 kb on - strand at 728.640 kb on - strand at 728.640 kb on - strand at 728.640 kb on - strand at 728.644 kb on - strand at 728.644 kb on - strand at 728.661 kb on + strand at 728.681 kb on + strand at 728.691 kb on + strand at 728.691 kb on + strand at 728.703 kb on + strand at 728.732 kb on - strand at 728.732 kb on - strand at 728.732 kb on - strand at 728.735 kb on + strand at 728.736 kb on - strand at 728.743 kb on - strand at 728.750 kb on - strand at 728.750 kb on - strand at 728.750 kb on - strand at 728.750 kb on - strand at 728.750 kb on - strand at 728.751 kb on + strand at 728.751 kb on + strand at 728.752 kb on - strand at 728.753 kb on + strand at 728.755 kb on - strand at 728.756 kb on + strand at 728.756 kb on + strand at 728.760 kb on - strand at 728.795 kb on + strand at 728.868 kb on + strand at 728.875 kb on - strand at 728.876 kb on + strand at 728.918 kb on + strand, within MMJJ_RS03900 at 728.923 kb on - strand, within MMJJ_RS03900 at 728.935 kb on + strand, within MMJJ_RS03900 at 729.061 kb on - strand, within MMJJ_RS03900 at 729.061 kb on - strand, within MMJJ_RS03900 at 729.061 kb on - strand, within MMJJ_RS03900 at 729.061 kb on - strand, within MMJJ_RS03900 at 729.062 kb on + strand, within MMJJ_RS03900 at 729.062 kb on + strand, within MMJJ_RS03900 at 729.090 kb on - strand, within MMJJ_RS03900 at 729.091 kb on + strand, within MMJJ_RS03900 at 729.095 kb on + strand, within MMJJ_RS03900 at 729.095 kb on + strand, within MMJJ_RS03900 at 729.095 kb on + strand, within MMJJ_RS03900 at 729.104 kb on - strand, within MMJJ_RS03900 at 729.104 kb on - strand, within MMJJ_RS03900 at 729.104 kb on - strand, within MMJJ_RS03900 at 729.105 kb on + strand, within MMJJ_RS03900 at 729.113 kb on + strand, within MMJJ_RS03900 at 729.275 kb on + strand, within MMJJ_RS03900 at 729.397 kb on - strand, within MMJJ_RS03900 at 729.412 kb on - strand, within MMJJ_RS03900 at 729.427 kb on - strand, within MMJJ_RS03900 at 729.468 kb on + strand, within MMJJ_RS03900 at 729.468 kb on + strand, within MMJJ_RS03900 at 729.469 kb on - strand, within MMJJ_RS03900 at 729.472 kb on - strand, within MMJJ_RS03900 at 729.473 kb on + strand, within MMJJ_RS03900 at 729.503 kb on - strand at 729.504 kb on + strand at 729.504 kb on + strand at 729.580 kb on - strand at 729.620 kb on - strand at 729.667 kb on - strand at 729.667 kb on - strand at 729.667 kb on - strand at 729.668 kb on + strand at 729.668 kb on + strand at 729.668 kb on + strand at 729.668 kb on + strand at 729.673 kb on - strand at 729.864 kb on + strand, within MMJJ_RS03905 at 729.882 kb on + strand, within MMJJ_RS03905 at 729.965 kb on + strand, within MMJJ_RS03905 at 730.009 kb on - strand, within MMJJ_RS03905 at 730.016 kb on + strand, within MMJJ_RS03905 at 730.016 kb on + strand, within MMJJ_RS03905 at 730.087 kb on - strand, within MMJJ_RS03905 at 730.169 kb on + strand, within MMJJ_RS03905 at 730.172 kb on - strand, within MMJJ_RS03905 at 730.173 kb on + strand, within MMJJ_RS03905 at 730.173 kb on + strand, within MMJJ_RS03905 at 730.360 kb on - strand at 730.360 kb on - strand at 730.386 kb on - strand at 730.387 kb on + strand at 730.472 kb on - strand at 730.484 kb on - strand, within MMJJ_RS03910 at 730.484 kb on - strand, within MMJJ_RS03910 at 730.512 kb on - strand, within MMJJ_RS03910 at 730.527 kb on + strand, within MMJJ_RS03910 at 730.528 kb on - strand at 730.529 kb on + strand, within MMJJ_RS03910 at 730.529 kb on + strand, within MMJJ_RS03910 at 730.529 kb on + strand, within MMJJ_RS03910 at 730.530 kb on - strand, within MMJJ_RS03910 at 730.530 kb on - strand, within MMJJ_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 727,899 + MMJJ_RS03895 0.29 -0.4 727,925 - MMJJ_RS03895 0.32 -0.9 728,077 - MMJJ_RS03895 0.47 -1.2 728,231 - MMJJ_RS03895 0.62 +1.4 728,231 - MMJJ_RS03895 0.62 +1.4 728,427 + MMJJ_RS03895 0.82 +0.4 728,471 + MMJJ_RS03895 0.86 -0.9 728,535 + -0.9 728,629 - -1.4 728,640 - +1.4 728,640 - +1.3 728,640 - +5.1 728,644 - -1.2 728,644 - -0.5 728,661 + -2.3 728,681 + -1.4 728,691 + -2.7 728,691 + -2.6 728,703 + +0.8 728,732 - +0.9 728,732 - -2.2 728,732 - -1.8 728,735 + -1.9 728,736 - -3.4 728,743 - -1.2 728,750 - +0.7 728,750 - -0.9 728,750 - -3.0 728,750 - +0.8 728,750 - +1.5 728,751 + +4.3 728,751 + +1.4 728,752 - -2.5 728,753 + -1.0 728,755 - +5.8 728,756 + +0.4 728,756 + -1.9 728,760 - -1.2 728,795 + -1.4 728,868 + +3.3 728,875 - -3.1 728,876 + +2.9 728,918 + MMJJ_RS03900 0.13 +2.6 728,923 - MMJJ_RS03900 0.13 -3.4 728,935 + MMJJ_RS03900 0.15 -0.8 729,061 - MMJJ_RS03900 0.31 +0.6 729,061 - MMJJ_RS03900 0.31 -1.2 729,061 - MMJJ_RS03900 0.31 -3.5 729,061 - MMJJ_RS03900 0.31 +2.1 729,062 + MMJJ_RS03900 0.32 +0.8 729,062 + MMJJ_RS03900 0.32 -1.5 729,090 - MMJJ_RS03900 0.35 +3.0 729,091 + MMJJ_RS03900 0.35 +2.5 729,095 + MMJJ_RS03900 0.36 +0.3 729,095 + MMJJ_RS03900 0.36 +0.7 729,095 + MMJJ_RS03900 0.36 +0.9 729,104 - MMJJ_RS03900 0.37 +1.4 729,104 - MMJJ_RS03900 0.37 -1.4 729,104 - MMJJ_RS03900 0.37 +3.4 729,105 + MMJJ_RS03900 0.37 -1.6 729,113 + MMJJ_RS03900 0.38 -1.3 729,275 + MMJJ_RS03900 0.60 -1.2 729,397 - MMJJ_RS03900 0.76 -0.3 729,412 - MMJJ_RS03900 0.78 +0.9 729,427 - MMJJ_RS03900 0.80 -3.5 729,468 + MMJJ_RS03900 0.85 +4.8 729,468 + MMJJ_RS03900 0.85 +0.1 729,469 - MMJJ_RS03900 0.85 -0.3 729,472 - MMJJ_RS03900 0.86 +2.1 729,473 + MMJJ_RS03900 0.86 +0.3 729,503 - +2.8 729,504 + +1.9 729,504 + +0.2 729,580 - -2.4 729,620 - -1.0 729,667 - +3.2 729,667 - -3.2 729,667 - +2.7 729,668 + +1.7 729,668 + +2.8 729,668 + +1.4 729,668 + -2.2 729,673 - +3.3 729,864 + MMJJ_RS03905 0.34 -0.4 729,882 + MMJJ_RS03905 0.36 -0.6 729,965 + MMJJ_RS03905 0.46 +1.7 730,009 - MMJJ_RS03905 0.52 -0.8 730,016 + MMJJ_RS03905 0.53 +0.4 730,016 + MMJJ_RS03905 0.53 +0.7 730,087 - MMJJ_RS03905 0.62 +1.1 730,169 + MMJJ_RS03905 0.72 -1.9 730,172 - MMJJ_RS03905 0.73 -0.2 730,173 + MMJJ_RS03905 0.73 +0.1 730,173 + MMJJ_RS03905 0.73 -2.2 730,360 - -1.0 730,360 - +0.5 730,386 - +1.4 730,387 + -3.4 730,472 - +0.1 730,484 - MMJJ_RS03910 0.10 +1.4 730,484 - MMJJ_RS03910 0.10 +2.4 730,512 - MMJJ_RS03910 0.14 -0.4 730,527 + MMJJ_RS03910 0.16 -1.1 730,528 - -0.2 730,529 + MMJJ_RS03910 0.16 -0.2 730,529 + MMJJ_RS03910 0.16 -1.3 730,529 + MMJJ_RS03910 0.16 +4.6 730,530 - MMJJ_RS03910 0.17 +1.5 730,530 - MMJJ_RS03910 0.17 -1.7
Or see this region's nucleotide sequence