Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03825 and MMJJ_RS03830 are separated by 37 nucleotides MMJJ_RS03830 and MMJJ_RS03835 are separated by 5 nucleotides MMJJ_RS03835 and MMJJ_RS03840 are separated by 9 nucleotides
MMJJ_RS03825: MMJJ_RS03825 - DUF1624 domain-containing protein, at 711,892 to 712,632
_RS03825
MMJJ_RS03830: MMJJ_RS03830 - CBS domain-containing protein, at 712,670 to 713,464
_RS03830
MMJJ_RS03835: MMJJ_RS03835 - DUF504 domain-containing protein, at 713,470 to 713,700
_RS03835
MMJJ_RS03840: MMJJ_RS03840 - DHH family phosphoesterase, at 713,710 to 715,170
_RS03840
Position (kb) 713
714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 712.518 kb on + strand, within MMJJ_RS03825 at 712.518 kb on + strand, within MMJJ_RS03825 at 712.544 kb on + strand, within MMJJ_RS03825 at 712.553 kb on + strand, within MMJJ_RS03825 at 712.567 kb on + strand at 712.567 kb on + strand at 712.576 kb on - strand at 712.576 kb on - strand at 712.577 kb on + strand at 712.577 kb on + strand at 712.579 kb on - strand at 712.650 kb on + strand at 712.658 kb on + strand at 712.684 kb on - strand at 712.699 kb on - strand at 712.700 kb on + strand at 712.700 kb on + strand at 712.700 kb on + strand at 712.700 kb on + strand at 712.700 kb on + strand at 712.701 kb on - strand at 712.741 kb on - strand at 712.745 kb on + strand at 712.811 kb on - strand, within MMJJ_RS03830 at 712.893 kb on - strand, within MMJJ_RS03830 at 712.919 kb on + strand, within MMJJ_RS03830 at 712.949 kb on - strand, within MMJJ_RS03830 at 712.950 kb on + strand, within MMJJ_RS03830 at 712.957 kb on + strand, within MMJJ_RS03830 at 713.006 kb on - strand, within MMJJ_RS03830 at 713.006 kb on - strand, within MMJJ_RS03830 at 713.007 kb on + strand, within MMJJ_RS03830 at 713.024 kb on + strand, within MMJJ_RS03830 at 713.038 kb on - strand, within MMJJ_RS03830 at 713.039 kb on + strand, within MMJJ_RS03830 at 713.039 kb on + strand, within MMJJ_RS03830 at 713.039 kb on + strand, within MMJJ_RS03830 at 713.043 kb on + strand, within MMJJ_RS03830 at 713.065 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.124 kb on + strand, within MMJJ_RS03830 at 713.197 kb on - strand, within MMJJ_RS03830 at 713.198 kb on + strand, within MMJJ_RS03830 at 713.222 kb on - strand, within MMJJ_RS03830 at 713.242 kb on - strand, within MMJJ_RS03830 at 713.280 kb on + strand, within MMJJ_RS03830 at 713.299 kb on - strand, within MMJJ_RS03830 at 713.306 kb on + strand, within MMJJ_RS03830 at 713.391 kb on + strand at 713.446 kb on + strand at 713.459 kb on - strand at 713.460 kb on + strand at 713.506 kb on + strand, within MMJJ_RS03835 at 713.580 kb on - strand, within MMJJ_RS03835 at 713.630 kb on - strand, within MMJJ_RS03835 at 713.631 kb on + strand, within MMJJ_RS03835 at 713.640 kb on - strand, within MMJJ_RS03835 at 713.643 kb on + strand, within MMJJ_RS03835 at 713.643 kb on + strand, within MMJJ_RS03835 at 713.656 kb on + strand, within MMJJ_RS03835 at 713.686 kb on + strand at 713.686 kb on + strand at 713.701 kb on - strand at 713.701 kb on - strand at 713.701 kb on - strand at 713.702 kb on + strand at 713.711 kb on - strand at 713.966 kb on - strand, within MMJJ_RS03840 at 714.027 kb on - strand, within MMJJ_RS03840 at 714.248 kb on - strand, within MMJJ_RS03840 at 714.517 kb on - strand, within MMJJ_RS03840 at 714.517 kb on - strand, within MMJJ_RS03840 at 714.545 kb on - strand, within MMJJ_RS03840 at 714.546 kb on + strand, within MMJJ_RS03840 at 714.658 kb on - strand, within MMJJ_RS03840 at 714.662 kb on + strand, within MMJJ_RS03840
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 712,518 + MMJJ_RS03825 0.84 -2.3 712,518 + MMJJ_RS03825 0.84 -1.4 712,544 + MMJJ_RS03825 0.88 +2.1 712,553 + MMJJ_RS03825 0.89 +0.4 712,567 + -1.8 712,567 + +3.1 712,576 - +1.1 712,576 - -1.6 712,577 + +0.8 712,577 + +2.0 712,579 - +1.4 712,650 + +0.6 712,658 + +0.7 712,684 - -0.9 712,699 - -2.5 712,700 + +1.1 712,700 + +1.9 712,700 + +0.4 712,700 + -1.2 712,700 + -1.3 712,701 - +1.4 712,741 - -0.5 712,745 + +2.6 712,811 - MMJJ_RS03830 0.18 -0.4 712,893 - MMJJ_RS03830 0.28 +1.4 712,919 + MMJJ_RS03830 0.31 -0.8 712,949 - MMJJ_RS03830 0.35 -1.2 712,950 + MMJJ_RS03830 0.35 -2.4 712,957 + MMJJ_RS03830 0.36 +1.8 713,006 - MMJJ_RS03830 0.42 +3.1 713,006 - MMJJ_RS03830 0.42 -0.8 713,007 + MMJJ_RS03830 0.42 -0.6 713,024 + MMJJ_RS03830 0.45 -1.0 713,038 - MMJJ_RS03830 0.46 -2.4 713,039 + MMJJ_RS03830 0.46 -1.7 713,039 + MMJJ_RS03830 0.46 +0.8 713,039 + MMJJ_RS03830 0.46 -1.0 713,043 + MMJJ_RS03830 0.47 +0.6 713,065 + MMJJ_RS03830 0.50 +0.9 713,124 + MMJJ_RS03830 0.57 -1.0 713,124 + MMJJ_RS03830 0.57 -2.8 713,124 + MMJJ_RS03830 0.57 -3.3 713,124 + MMJJ_RS03830 0.57 -3.9 713,124 + MMJJ_RS03830 0.57 +0.4 713,197 - MMJJ_RS03830 0.66 +1.3 713,198 + MMJJ_RS03830 0.66 +2.9 713,222 - MMJJ_RS03830 0.69 +3.1 713,242 - MMJJ_RS03830 0.72 -0.7 713,280 + MMJJ_RS03830 0.77 +3.9 713,299 - MMJJ_RS03830 0.79 +2.0 713,306 + MMJJ_RS03830 0.80 -0.9 713,391 + +3.5 713,446 + +1.5 713,459 - +2.8 713,460 + +3.4 713,506 + MMJJ_RS03835 0.16 -2.4 713,580 - MMJJ_RS03835 0.48 -2.7 713,630 - MMJJ_RS03835 0.69 +2.3 713,631 + MMJJ_RS03835 0.70 +1.0 713,640 - MMJJ_RS03835 0.74 +4.0 713,643 + MMJJ_RS03835 0.75 -1.9 713,643 + MMJJ_RS03835 0.75 -1.2 713,656 + MMJJ_RS03835 0.81 +4.1 713,686 + -0.6 713,686 + -1.3 713,701 - -0.5 713,701 - +2.7 713,701 - +1.2 713,702 + -1.8 713,711 - +1.3 713,966 - MMJJ_RS03840 0.18 -0.6 714,027 - MMJJ_RS03840 0.22 -0.2 714,248 - MMJJ_RS03840 0.37 -0.6 714,517 - MMJJ_RS03840 0.55 +0.4 714,517 - MMJJ_RS03840 0.55 -1.2 714,545 - MMJJ_RS03840 0.57 -0.9 714,546 + MMJJ_RS03840 0.57 +1.4 714,658 - MMJJ_RS03840 0.65 +0.4 714,662 + MMJJ_RS03840 0.65 -0.6
Or see this region's nucleotide sequence