Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03800 and MMJJ_RS03805 are separated by 11 nucleotides MMJJ_RS03805 and MMJJ_RS03810 overlap by 4 nucleotides MMJJ_RS03810 and MMJJ_RS03815 are separated by 72 nucleotides MMJJ_RS03815 and MMJJ_RS03820 are separated by 245 nucleotides
MMJJ_RS03800: MMJJ_RS03800 - aldolase, at 707,622 to 708,548
_RS03800
MMJJ_RS03805: MMJJ_RS03805 - hypothetical protein, at 708,560 to 708,745
_RS03805
MMJJ_RS03810: MMJJ_RS03810 - AIR synthase-related protein, at 708,742 to 710,085
_RS03810
MMJJ_RS03815: MMJJ_RS03815 - nascent polypeptide-associated complex protein, at 710,158 to 710,538
_RS03815
MMJJ_RS03820: MMJJ_RS03820 - hydrogenase formation protein HypD, at 710,784 to 711,866
_RS03820
Position (kb) 708
709
710
711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 707.770 kb on - strand, within MMJJ_RS03800 at 707.913 kb on + strand, within MMJJ_RS03800 at 707.914 kb on - strand, within MMJJ_RS03800 at 707.920 kb on + strand, within MMJJ_RS03800 at 708.000 kb on + strand, within MMJJ_RS03800 at 708.005 kb on - strand, within MMJJ_RS03800 at 708.006 kb on + strand, within MMJJ_RS03800 at 708.006 kb on + strand, within MMJJ_RS03800 at 708.007 kb on - strand, within MMJJ_RS03800 at 708.010 kb on - strand, within MMJJ_RS03800 at 708.056 kb on - strand, within MMJJ_RS03800 at 708.056 kb on - strand, within MMJJ_RS03800 at 708.057 kb on + strand, within MMJJ_RS03800 at 708.057 kb on + strand, within MMJJ_RS03800 at 708.061 kb on - strand, within MMJJ_RS03800 at 708.061 kb on - strand, within MMJJ_RS03800 at 708.061 kb on - strand, within MMJJ_RS03800 at 708.061 kb on - strand, within MMJJ_RS03800 at 708.062 kb on + strand, within MMJJ_RS03800 at 708.062 kb on + strand, within MMJJ_RS03800 at 708.062 kb on + strand, within MMJJ_RS03800 at 708.062 kb on + strand, within MMJJ_RS03800 at 708.063 kb on - strand, within MMJJ_RS03800 at 708.064 kb on + strand, within MMJJ_RS03800 at 708.078 kb on - strand, within MMJJ_RS03800 at 708.117 kb on - strand, within MMJJ_RS03800 at 708.146 kb on + strand, within MMJJ_RS03800 at 708.146 kb on + strand, within MMJJ_RS03800 at 708.146 kb on + strand, within MMJJ_RS03800 at 708.216 kb on + strand, within MMJJ_RS03800 at 708.257 kb on + strand, within MMJJ_RS03800 at 708.293 kb on - strand, within MMJJ_RS03800 at 708.294 kb on + strand, within MMJJ_RS03800 at 708.294 kb on + strand, within MMJJ_RS03800 at 708.323 kb on - strand, within MMJJ_RS03800 at 708.324 kb on + strand, within MMJJ_RS03800 at 708.332 kb on + strand, within MMJJ_RS03800 at 708.488 kb on + strand at 708.524 kb on - strand at 708.525 kb on + strand at 708.525 kb on + strand at 708.525 kb on + strand at 708.526 kb on - strand at 708.529 kb on + strand at 708.556 kb on - strand at 708.557 kb on + strand at 708.576 kb on - strand at 708.577 kb on + strand at 708.587 kb on + strand, within MMJJ_RS03805 at 708.675 kb on - strand, within MMJJ_RS03805 at 708.681 kb on - strand, within MMJJ_RS03805 at 708.682 kb on + strand, within MMJJ_RS03805 at 708.682 kb on + strand, within MMJJ_RS03805 at 708.718 kb on + strand, within MMJJ_RS03805 at 708.728 kb on + strand at 708.728 kb on + strand at 708.728 kb on + strand at 708.730 kb on - strand at 708.731 kb on + strand at 708.734 kb on + strand at 708.763 kb on - strand at 708.763 kb on - strand at 708.764 kb on + strand at 708.764 kb on + strand at 708.766 kb on - strand at 708.931 kb on - strand, within MMJJ_RS03810 at 709.268 kb on + strand, within MMJJ_RS03810 at 709.279 kb on - strand, within MMJJ_RS03810 at 709.473 kb on - strand, within MMJJ_RS03810 at 709.727 kb on + strand, within MMJJ_RS03810 at 709.885 kb on - strand, within MMJJ_RS03810 at 710.128 kb on + strand at 710.189 kb on + strand at 710.209 kb on - strand, within MMJJ_RS03815 at 710.210 kb on + strand, within MMJJ_RS03815 at 710.433 kb on - strand, within MMJJ_RS03815 at 710.434 kb on + strand, within MMJJ_RS03815 at 710.541 kb on - strand at 710.541 kb on - strand at 710.542 kb on + strand at 710.542 kb on + strand at 710.542 kb on + strand at 710.552 kb on - strand at 710.552 kb on - strand at 710.553 kb on + strand at 710.556 kb on - strand at 710.572 kb on + strand at 710.572 kb on + strand at 710.576 kb on - strand at 710.580 kb on - strand at 710.580 kb on - strand at 710.582 kb on - strand at 710.598 kb on - strand at 710.598 kb on - strand at 710.598 kb on - strand at 710.600 kb on - strand at 710.601 kb on + strand at 710.604 kb on - strand at 710.604 kb on - strand at 710.604 kb on - strand at 710.604 kb on - strand at 710.604 kb on - strand at 710.605 kb on + strand at 710.605 kb on + strand at 710.605 kb on + strand at 710.618 kb on + strand at 710.685 kb on - strand at 710.697 kb on + strand at 710.697 kb on + strand at 710.697 kb on + strand at 710.711 kb on + strand at 710.728 kb on - strand at 710.728 kb on - strand at 710.734 kb on - strand at 710.735 kb on + strand at 710.737 kb on + strand at 710.738 kb on - strand at 710.738 kb on - strand at 710.738 kb on - strand at 710.738 kb on - strand at 710.738 kb on - strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.739 kb on + strand at 710.741 kb on - strand at 710.741 kb on - strand at 710.741 kb on - strand at 710.742 kb on + strand at 710.742 kb on + strand at 710.742 kb on + strand at 710.751 kb on - strand at 710.761 kb on + strand at 710.765 kb on - strand at 710.765 kb on - strand at 710.766 kb on + strand at 710.783 kb on - strand at 710.784 kb on + strand at 710.784 kb on + strand at 710.991 kb on + strand, within MMJJ_RS03820 at 711.066 kb on - strand at 711.066 kb on - strand at 711.067 kb on + strand, within MMJJ_RS03820 at 711.067 kb on + strand, within MMJJ_RS03820
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 707,770 - MMJJ_RS03800 0.16 -2.3 707,913 + MMJJ_RS03800 0.31 +0.5 707,914 - MMJJ_RS03800 0.31 +0.1 707,920 + MMJJ_RS03800 0.32 -1.4 708,000 + MMJJ_RS03800 0.41 +0.2 708,005 - MMJJ_RS03800 0.41 -0.6 708,006 + MMJJ_RS03800 0.41 +1.8 708,006 + MMJJ_RS03800 0.41 -2.0 708,007 - MMJJ_RS03800 0.42 -1.0 708,010 - MMJJ_RS03800 0.42 -0.9 708,056 - MMJJ_RS03800 0.47 -3.0 708,056 - MMJJ_RS03800 0.47 -0.9 708,057 + MMJJ_RS03800 0.47 -1.6 708,057 + MMJJ_RS03800 0.47 -0.9 708,061 - MMJJ_RS03800 0.47 +0.4 708,061 - MMJJ_RS03800 0.47 -2.9 708,061 - MMJJ_RS03800 0.47 -1.1 708,061 - MMJJ_RS03800 0.47 +0.4 708,062 + MMJJ_RS03800 0.47 -2.0 708,062 + MMJJ_RS03800 0.47 -3.3 708,062 + MMJJ_RS03800 0.47 -1.4 708,062 + MMJJ_RS03800 0.47 +0.2 708,063 - MMJJ_RS03800 0.48 -1.0 708,064 + MMJJ_RS03800 0.48 -1.1 708,078 - MMJJ_RS03800 0.49 +2.1 708,117 - MMJJ_RS03800 0.53 -1.0 708,146 + MMJJ_RS03800 0.57 -1.4 708,146 + MMJJ_RS03800 0.57 -2.1 708,146 + MMJJ_RS03800 0.57 -3.3 708,216 + MMJJ_RS03800 0.64 -4.1 708,257 + MMJJ_RS03800 0.69 -1.5 708,293 - MMJJ_RS03800 0.72 -1.4 708,294 + MMJJ_RS03800 0.72 -2.0 708,294 + MMJJ_RS03800 0.72 -3.3 708,323 - MMJJ_RS03800 0.76 -1.4 708,324 + MMJJ_RS03800 0.76 -1.6 708,332 + MMJJ_RS03800 0.77 -3.3 708,488 + -3.0 708,524 - +0.4 708,525 + -1.3 708,525 + -1.6 708,525 + -2.0 708,526 - -1.2 708,529 + +0.4 708,556 - +3.5 708,557 + +2.4 708,576 - +1.1 708,577 + +0.5 708,587 + MMJJ_RS03805 0.15 -0.2 708,675 - MMJJ_RS03805 0.62 -2.2 708,681 - MMJJ_RS03805 0.65 -0.9 708,682 + MMJJ_RS03805 0.66 +0.8 708,682 + MMJJ_RS03805 0.66 -2.6 708,718 + MMJJ_RS03805 0.85 -2.4 708,728 + -2.5 708,728 + -1.2 708,728 + -2.5 708,730 - -0.1 708,731 + +0.4 708,734 + -0.7 708,763 - +3.9 708,763 - -0.0 708,764 + +1.4 708,764 + +2.5 708,766 - +0.9 708,931 - MMJJ_RS03810 0.14 +0.4 709,268 + MMJJ_RS03810 0.39 -0.9 709,279 - MMJJ_RS03810 0.40 -0.9 709,473 - MMJJ_RS03810 0.54 -1.6 709,727 + MMJJ_RS03810 0.73 -0.6 709,885 - MMJJ_RS03810 0.85 -0.6 710,128 + +2.4 710,189 + -0.6 710,209 - MMJJ_RS03815 0.13 -0.2 710,210 + MMJJ_RS03815 0.14 +0.4 710,433 - MMJJ_RS03815 0.72 -1.4 710,434 + MMJJ_RS03815 0.72 +0.4 710,541 - -0.9 710,541 - +1.1 710,542 + -1.6 710,542 + -2.3 710,542 + -1.4 710,552 - -3.4 710,552 - +0.1 710,553 + +0.4 710,556 - -1.2 710,572 + -2.0 710,572 + -0.2 710,576 - +0.6 710,580 - -2.3 710,580 - -1.3 710,582 - -3.2 710,598 - -3.0 710,598 - -2.0 710,598 - +1.1 710,600 - -1.9 710,601 + -1.8 710,604 - +0.8 710,604 - -1.2 710,604 - +0.6 710,604 - -2.2 710,604 - +2.5 710,605 + -1.8 710,605 + +0.4 710,605 + +1.1 710,618 + -2.8 710,685 - +2.7 710,697 + +3.5 710,697 + -0.4 710,697 + +1.7 710,711 + +1.5 710,728 - +0.1 710,728 - +0.5 710,734 - -3.2 710,735 + -0.4 710,737 + +0.9 710,738 - -0.2 710,738 - -0.8 710,738 - -0.6 710,738 - -1.6 710,738 - +1.4 710,739 + -1.2 710,739 + -2.9 710,739 + +1.7 710,739 + +2.4 710,739 + -0.3 710,739 + +0.8 710,739 + +2.2 710,741 - +0.0 710,741 - -2.9 710,741 - -0.7 710,742 + -1.3 710,742 + +1.2 710,742 + +2.4 710,751 - +0.5 710,761 + +0.2 710,765 - -1.9 710,765 - +1.3 710,766 + -2.7 710,783 - -1.2 710,784 + +0.4 710,784 + +0.4 710,991 + MMJJ_RS03820 0.19 +1.8 711,066 - +1.4 711,066 - +1.4 711,067 + MMJJ_RS03820 0.26 +1.4 711,067 + MMJJ_RS03820 0.26 +0.4
Or see this region's nucleotide sequence