Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03805

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03800 and MMJJ_RS03805 are separated by 11 nucleotidesMMJJ_RS03805 and MMJJ_RS03810 overlap by 4 nucleotides MMJJ_RS03800: MMJJ_RS03800 - aldolase, at 707,622 to 708,548 _RS03800 MMJJ_RS03805: MMJJ_RS03805 - hypothetical protein, at 708,560 to 708,745 _RS03805 MMJJ_RS03810: MMJJ_RS03810 - AIR synthase-related protein, at 708,742 to 710,085 _RS03810 Position (kb) 708 709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 707.571 kb on - strandat 707.572 kb on + strandat 707.579 kb on - strandat 707.579 kb on - strandat 707.579 kb on - strandat 707.580 kb on + strandat 707.592 kb on + strandat 707.595 kb on - strandat 707.600 kb on + strandat 707.606 kb on - strandat 707.635 kb on - strandat 707.651 kb on + strandat 707.653 kb on - strandat 707.692 kb on + strandat 707.724 kb on + strand, within MMJJ_RS03800at 707.770 kb on - strand, within MMJJ_RS03800at 707.913 kb on + strand, within MMJJ_RS03800at 707.914 kb on - strand, within MMJJ_RS03800at 707.920 kb on + strand, within MMJJ_RS03800at 708.000 kb on + strand, within MMJJ_RS03800at 708.005 kb on - strand, within MMJJ_RS03800at 708.006 kb on + strand, within MMJJ_RS03800at 708.006 kb on + strand, within MMJJ_RS03800at 708.007 kb on - strand, within MMJJ_RS03800at 708.010 kb on - strand, within MMJJ_RS03800at 708.056 kb on - strand, within MMJJ_RS03800at 708.056 kb on - strand, within MMJJ_RS03800at 708.057 kb on + strand, within MMJJ_RS03800at 708.057 kb on + strand, within MMJJ_RS03800at 708.061 kb on - strand, within MMJJ_RS03800at 708.061 kb on - strand, within MMJJ_RS03800at 708.061 kb on - strand, within MMJJ_RS03800at 708.061 kb on - strand, within MMJJ_RS03800at 708.062 kb on + strand, within MMJJ_RS03800at 708.062 kb on + strand, within MMJJ_RS03800at 708.062 kb on + strand, within MMJJ_RS03800at 708.062 kb on + strand, within MMJJ_RS03800at 708.063 kb on - strand, within MMJJ_RS03800at 708.064 kb on + strand, within MMJJ_RS03800at 708.078 kb on - strand, within MMJJ_RS03800at 708.117 kb on - strand, within MMJJ_RS03800at 708.146 kb on + strand, within MMJJ_RS03800at 708.146 kb on + strand, within MMJJ_RS03800at 708.146 kb on + strand, within MMJJ_RS03800at 708.216 kb on + strand, within MMJJ_RS03800at 708.257 kb on + strand, within MMJJ_RS03800at 708.293 kb on - strand, within MMJJ_RS03800at 708.294 kb on + strand, within MMJJ_RS03800at 708.294 kb on + strand, within MMJJ_RS03800at 708.323 kb on - strand, within MMJJ_RS03800at 708.324 kb on + strand, within MMJJ_RS03800at 708.332 kb on + strand, within MMJJ_RS03800at 708.488 kb on + strandat 708.524 kb on - strandat 708.525 kb on + strandat 708.525 kb on + strandat 708.525 kb on + strandat 708.526 kb on - strandat 708.529 kb on + strandat 708.556 kb on - strandat 708.557 kb on + strandat 708.576 kb on - strandat 708.577 kb on + strandat 708.587 kb on + strand, within MMJJ_RS03805at 708.675 kb on - strand, within MMJJ_RS03805at 708.681 kb on - strand, within MMJJ_RS03805at 708.682 kb on + strand, within MMJJ_RS03805at 708.682 kb on + strand, within MMJJ_RS03805at 708.718 kb on + strand, within MMJJ_RS03805at 708.728 kb on + strandat 708.728 kb on + strandat 708.728 kb on + strandat 708.730 kb on - strandat 708.731 kb on + strandat 708.734 kb on + strandat 708.763 kb on - strandat 708.763 kb on - strandat 708.764 kb on + strandat 708.764 kb on + strandat 708.766 kb on - strandat 708.931 kb on - strand, within MMJJ_RS03810at 709.268 kb on + strand, within MMJJ_RS03810at 709.279 kb on - strand, within MMJJ_RS03810at 709.473 kb on - strand, within MMJJ_RS03810at 709.727 kb on + strand, within MMJJ_RS03810

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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707,571 - +2.1
707,572 + -2.4
707,579 - -2.4
707,579 - -1.3
707,579 - +0.2
707,580 + -2.2
707,592 + -1.0
707,595 - +5.1
707,600 + +2.3
707,606 - -0.6
707,635 - -2.6
707,651 + -1.5
707,653 - -2.6
707,692 + -2.8
707,724 + MMJJ_RS03800 0.11 +4.8
707,770 - MMJJ_RS03800 0.16 -2.3
707,913 + MMJJ_RS03800 0.31 +0.5
707,914 - MMJJ_RS03800 0.31 +0.1
707,920 + MMJJ_RS03800 0.32 -1.4
708,000 + MMJJ_RS03800 0.41 +0.2
708,005 - MMJJ_RS03800 0.41 -0.6
708,006 + MMJJ_RS03800 0.41 +1.8
708,006 + MMJJ_RS03800 0.41 -2.0
708,007 - MMJJ_RS03800 0.42 -1.0
708,010 - MMJJ_RS03800 0.42 -0.9
708,056 - MMJJ_RS03800 0.47 -3.0
708,056 - MMJJ_RS03800 0.47 -0.9
708,057 + MMJJ_RS03800 0.47 -1.6
708,057 + MMJJ_RS03800 0.47 -0.9
708,061 - MMJJ_RS03800 0.47 +0.4
708,061 - MMJJ_RS03800 0.47 -2.9
708,061 - MMJJ_RS03800 0.47 -1.1
708,061 - MMJJ_RS03800 0.47 +0.4
708,062 + MMJJ_RS03800 0.47 -2.0
708,062 + MMJJ_RS03800 0.47 -3.3
708,062 + MMJJ_RS03800 0.47 -1.4
708,062 + MMJJ_RS03800 0.47 +0.2
708,063 - MMJJ_RS03800 0.48 -1.0
708,064 + MMJJ_RS03800 0.48 -1.1
708,078 - MMJJ_RS03800 0.49 +2.1
708,117 - MMJJ_RS03800 0.53 -1.0
708,146 + MMJJ_RS03800 0.57 -1.4
708,146 + MMJJ_RS03800 0.57 -2.1
708,146 + MMJJ_RS03800 0.57 -3.3
708,216 + MMJJ_RS03800 0.64 -4.1
708,257 + MMJJ_RS03800 0.69 -1.5
708,293 - MMJJ_RS03800 0.72 -1.4
708,294 + MMJJ_RS03800 0.72 -2.0
708,294 + MMJJ_RS03800 0.72 -3.3
708,323 - MMJJ_RS03800 0.76 -1.4
708,324 + MMJJ_RS03800 0.76 -1.6
708,332 + MMJJ_RS03800 0.77 -3.3
708,488 + -3.0
708,524 - +0.4
708,525 + -1.3
708,525 + -1.6
708,525 + -2.0
708,526 - -1.2
708,529 + +0.4
708,556 - +3.5
708,557 + +2.4
708,576 - +1.1
708,577 + +0.5
708,587 + MMJJ_RS03805 0.15 -0.2
708,675 - MMJJ_RS03805 0.62 -2.2
708,681 - MMJJ_RS03805 0.65 -0.9
708,682 + MMJJ_RS03805 0.66 +0.8
708,682 + MMJJ_RS03805 0.66 -2.6
708,718 + MMJJ_RS03805 0.85 -2.4
708,728 + -2.5
708,728 + -1.2
708,728 + -2.5
708,730 - -0.1
708,731 + +0.4
708,734 + -0.7
708,763 - +3.9
708,763 - -0.0
708,764 + +1.4
708,764 + +2.5
708,766 - +0.9
708,931 - MMJJ_RS03810 0.14 +0.4
709,268 + MMJJ_RS03810 0.39 -0.9
709,279 - MMJJ_RS03810 0.40 -0.9
709,473 - MMJJ_RS03810 0.54 -1.6
709,727 + MMJJ_RS03810 0.73 -0.6

Or see this region's nucleotide sequence