Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03775 and MMJJ_RS03780 are separated by 226 nucleotides MMJJ_RS03780 and MMJJ_RS03785 are separated by 57 nucleotides MMJJ_RS03785 and MMJJ_RS03790 are separated by 37 nucleotides
MMJJ_RS03775: MMJJ_RS03775 - 50S ribosomal protein L15e, at 703,055 to 703,639
_RS03775
MMJJ_RS03780: MMJJ_RS03780 - translation initiation factor IF-2 subunit beta, at 703,866 to 704,282
_RS03780
MMJJ_RS03785: MMJJ_RS03785 - hypothetical protein, at 704,340 to 705,428
_RS03785
MMJJ_RS03790: MMJJ_RS03790 - homoserine kinase, at 705,466 to 706,371
_RS03790
Position (kb) 704
705
706 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 703.624 kb on + strand at 703.781 kb on - strand at 703.782 kb on + strand at 703.782 kb on + strand at 703.783 kb on - strand at 703.783 kb on - strand at 704.279 kb on + strand at 704.280 kb on - strand at 704.281 kb on + strand at 704.281 kb on + strand at 704.281 kb on + strand at 704.281 kb on + strand at 704.284 kb on - strand at 704.309 kb on + strand at 704.309 kb on + strand at 704.313 kb on + strand at 704.724 kb on + strand, within MMJJ_RS03785 at 704.779 kb on + strand, within MMJJ_RS03785 at 704.782 kb on + strand, within MMJJ_RS03785 at 704.965 kb on - strand, within MMJJ_RS03785 at 704.973 kb on + strand, within MMJJ_RS03785 at 705.169 kb on + strand, within MMJJ_RS03785 at 705.275 kb on - strand, within MMJJ_RS03785 at 705.339 kb on + strand at 705.339 kb on + strand at 705.413 kb on + strand at 705.421 kb on - strand at 705.422 kb on + strand at 705.426 kb on - strand at 705.431 kb on + strand at 705.467 kb on - strand at 705.728 kb on + strand, within MMJJ_RS03790 at 706.242 kb on - strand at 706.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 703,624 + +0.4 703,781 - -0.6 703,782 + -1.9 703,782 + -0.2 703,783 - -1.2 703,783 - +1.4 704,279 + -2.2 704,280 - -0.6 704,281 + -0.9 704,281 + -3.9 704,281 + -2.1 704,281 + +1.3 704,284 - -1.2 704,309 + -0.4 704,309 + +0.4 704,313 + -2.9 704,724 + MMJJ_RS03785 0.35 +0.4 704,779 + MMJJ_RS03785 0.40 -2.1 704,782 + MMJJ_RS03785 0.41 -0.9 704,965 - MMJJ_RS03785 0.57 -1.2 704,973 + MMJJ_RS03785 0.58 -0.2 705,169 + MMJJ_RS03785 0.76 -0.2 705,275 - MMJJ_RS03785 0.86 -0.6 705,339 + -0.9 705,339 + -0.9 705,413 + -0.2 705,421 - -2.2 705,422 + +1.5 705,426 - +0.9 705,431 + +0.1 705,467 - -1.2 705,728 + MMJJ_RS03790 0.29 +1.4 706,242 - +0.4 706,355 + -0.2
Or see this region's nucleotide sequence