Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03750 and MMJJ_RS03755 are separated by 20 nucleotides MMJJ_RS03755 and MMJJ_RS03760 are separated by 198 nucleotides MMJJ_RS03760 and MMJJ_RS03765 overlap by 1 nucleotides MMJJ_RS03765 and MMJJ_RS03770 are separated by 259 nucleotides
MMJJ_RS03750: MMJJ_RS03750 - rubredoxin, at 700,026 to 700,163
_RS03750
MMJJ_RS03755: MMJJ_RS03755 - hypothetical protein, at 700,184 to 700,543
_RS03755
MMJJ_RS03760: MMJJ_RS03760 - hydrogenase maturation nickel metallochaperone HypA, at 700,742 to 701,122
_RS03760
MMJJ_RS03765: MMJJ_RS03765 - hypothetical protein, at 701,122 to 701,583
_RS03765
MMJJ_RS03770: MMJJ_RS03770 - hypothetical protein, at 701,843 to 702,091
_RS03770
Position (kb) 701
702 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 700.162 kb on + strand at 700.192 kb on + strand at 700.192 kb on - strand at 700.209 kb on - strand at 700.209 kb on - strand at 700.210 kb on + strand at 700.210 kb on + strand at 700.210 kb on + strand at 700.210 kb on + strand at 700.210 kb on + strand at 700.214 kb on - strand at 700.215 kb on + strand at 700.218 kb on - strand at 700.219 kb on + strand at 700.219 kb on + strand at 700.256 kb on - strand, within MMJJ_RS03755 at 700.281 kb on - strand, within MMJJ_RS03755 at 700.281 kb on - strand, within MMJJ_RS03755 at 700.282 kb on + strand, within MMJJ_RS03755 at 700.282 kb on + strand, within MMJJ_RS03755 at 700.446 kb on + strand, within MMJJ_RS03755 at 700.446 kb on + strand, within MMJJ_RS03755 at 700.499 kb on - strand, within MMJJ_RS03755 at 700.523 kb on - strand at 700.589 kb on + strand at 700.596 kb on - strand at 700.598 kb on - strand at 700.598 kb on - strand at 700.598 kb on - strand at 700.599 kb on + strand at 700.600 kb on - strand at 700.601 kb on + strand at 700.601 kb on + strand at 700.601 kb on + strand at 700.604 kb on + strand at 700.635 kb on - strand at 700.636 kb on + strand at 700.681 kb on - strand at 700.685 kb on - strand at 700.685 kb on - strand at 700.685 kb on - strand at 700.695 kb on - strand at 700.695 kb on - strand at 700.695 kb on - strand at 700.695 kb on - strand at 700.696 kb on + strand at 700.696 kb on + strand at 700.696 kb on + strand at 700.696 kb on + strand at 700.696 kb on + strand at 700.697 kb on - strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.712 kb on + strand at 700.727 kb on + strand at 700.727 kb on + strand at 700.730 kb on - strand at 700.731 kb on + strand at 700.778 kb on - strand at 700.808 kb on + strand, within MMJJ_RS03760 at 700.835 kb on - strand at 700.835 kb on - strand, within MMJJ_RS03760 at 700.863 kb on + strand, within MMJJ_RS03760 at 700.942 kb on - strand, within MMJJ_RS03760 at 700.946 kb on + strand, within MMJJ_RS03760 at 700.991 kb on - strand, within MMJJ_RS03760 at 701.021 kb on - strand, within MMJJ_RS03760 at 701.022 kb on + strand, within MMJJ_RS03760 at 701.023 kb on - strand, within MMJJ_RS03760 at 701.031 kb on + strand at 701.261 kb on - strand, within MMJJ_RS03765 at 701.261 kb on - strand, within MMJJ_RS03765 at 701.261 kb on - strand, within MMJJ_RS03765 at 701.262 kb on + strand, within MMJJ_RS03765 at 701.262 kb on + strand, within MMJJ_RS03765 at 701.285 kb on + strand, within MMJJ_RS03765 at 701.285 kb on + strand, within MMJJ_RS03765 at 701.288 kb on - strand, within MMJJ_RS03765 at 701.288 kb on - strand, within MMJJ_RS03765 at 701.289 kb on + strand, within MMJJ_RS03765 at 701.339 kb on + strand, within MMJJ_RS03765 at 701.339 kb on + strand, within MMJJ_RS03765 at 701.370 kb on - strand, within MMJJ_RS03765 at 701.373 kb on - strand, within MMJJ_RS03765 at 701.374 kb on + strand, within MMJJ_RS03765 at 701.374 kb on + strand, within MMJJ_RS03765 at 701.375 kb on - strand, within MMJJ_RS03765 at 701.375 kb on - strand, within MMJJ_RS03765 at 701.376 kb on + strand, within MMJJ_RS03765 at 701.379 kb on - strand, within MMJJ_RS03765 at 701.574 kb on - strand at 701.600 kb on + strand at 701.602 kb on + strand at 701.602 kb on + strand at 701.602 kb on + strand at 701.602 kb on + strand at 701.602 kb on + strand at 701.606 kb on - strand at 701.637 kb on - strand at 701.637 kb on - strand at 701.637 kb on - strand at 701.638 kb on + strand at 701.638 kb on + strand at 701.638 kb on + strand at 701.639 kb on - strand at 701.640 kb on + strand at 701.640 kb on + strand at 701.641 kb on - strand at 701.650 kb on - strand at 701.651 kb on + strand at 701.652 kb on - strand at 701.655 kb on - strand at 701.664 kb on + strand at 701.711 kb on - strand at 701.711 kb on - strand at 701.712 kb on + strand at 701.715 kb on - strand at 701.715 kb on - strand at 701.716 kb on + strand at 701.775 kb on + strand at 701.784 kb on - strand at 701.814 kb on + strand at 701.839 kb on - strand at 701.844 kb on - strand at 701.866 kb on - strand at 701.867 kb on + strand at 701.874 kb on - strand, within MMJJ_RS03770 at 701.874 kb on - strand, within MMJJ_RS03770 at 701.874 kb on - strand, within MMJJ_RS03770 at 701.875 kb on + strand, within MMJJ_RS03770 at 701.878 kb on - strand, within MMJJ_RS03770 at 701.878 kb on - strand, within MMJJ_RS03770 at 701.878 kb on - strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.906 kb on + strand, within MMJJ_RS03770 at 701.921 kb on + strand, within MMJJ_RS03770 at 701.921 kb on + strand, within MMJJ_RS03770 at 701.921 kb on + strand, within MMJJ_RS03770 at 701.924 kb on - strand, within MMJJ_RS03770 at 701.924 kb on - strand, within MMJJ_RS03770 at 701.925 kb on + strand, within MMJJ_RS03770 at 701.942 kb on - strand, within MMJJ_RS03770 at 702.025 kb on - strand, within MMJJ_RS03770 at 702.031 kb on - strand, within MMJJ_RS03770 at 702.032 kb on + strand, within MMJJ_RS03770 at 702.032 kb on + strand, within MMJJ_RS03770 at 702.053 kb on - strand, within MMJJ_RS03770 at 702.053 kb on - strand, within MMJJ_RS03770 at 702.054 kb on + strand, within MMJJ_RS03770 at 702.094 kb on - strand at 702.095 kb on + strand at 702.107 kb on + strand at 702.125 kb on - strand at 702.126 kb on + strand at 702.136 kb on - strand at 702.136 kb on - strand at 702.149 kb on - strand at 702.149 kb on - strand at 702.150 kb on + strand at 702.150 kb on + strand at 702.152 kb on - strand at 702.153 kb on + strand at 702.153 kb on + strand at 702.157 kb on - strand at 702.158 kb on + strand at 702.176 kb on - strand at 702.177 kb on + strand at 702.180 kb on - strand at 702.184 kb on + strand at 702.184 kb on + strand at 702.196 kb on - strand at 702.209 kb on - strand at 702.209 kb on - strand at 702.209 kb on - strand at 702.209 kb on - strand at 702.210 kb on + strand at 702.210 kb on + strand at 702.210 kb on + strand at 702.210 kb on + strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.216 kb on - strand at 702.216 kb on - strand at 702.217 kb on + strand at 702.236 kb on - strand at 702.236 kb on - strand at 702.266 kb on - strand at 702.266 kb on - strand at 702.295 kb on - strand at 702.298 kb on + strand at 702.321 kb on - strand at 702.330 kb on + strand at 702.333 kb on + strand at 702.333 kb on + strand at 702.344 kb on - strand at 702.348 kb on + strand at 702.372 kb on - strand at 702.382 kb on - strand at 702.401 kb on + strand at 702.417 kb on - strand at 702.429 kb on - strand at 702.429 kb on - strand at 702.430 kb on + strand at 702.430 kb on + strand at 702.430 kb on + strand at 702.430 kb on + strand at 702.433 kb on - strand at 702.433 kb on - strand at 702.434 kb on + strand at 702.434 kb on + strand at 702.435 kb on - strand at 702.435 kb on - strand at 702.436 kb on + strand at 702.436 kb on + strand at 702.436 kb on + strand at 702.436 kb on + strand at 702.436 kb on + strand at 702.440 kb on - strand at 702.440 kb on - strand at 702.441 kb on + strand at 702.441 kb on + strand at 702.441 kb on + strand at 702.441 kb on + strand at 702.441 kb on + strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.445 kb on + strand at 702.445 kb on + strand at 702.445 kb on + strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.447 kb on + strand at 702.447 kb on + strand at 702.447 kb on + strand at 702.449 kb on - strand at 702.450 kb on + strand at 702.450 kb on + strand at 702.458 kb on - strand at 702.478 kb on - strand at 702.501 kb on + strand at 702.549 kb on - strand at 702.549 kb on - strand at 702.574 kb on - strand at 702.574 kb on - strand at 702.581 kb on - strand at 702.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 700,162 + -0.9 700,192 + +2.9 700,192 - -1.2 700,209 - +2.6 700,209 - -1.2 700,210 + -1.4 700,210 + -1.4 700,210 + -1.3 700,210 + -0.6 700,210 + -0.9 700,214 - -1.4 700,215 + +1.3 700,218 - +1.4 700,219 + +2.2 700,219 + +2.4 700,256 - MMJJ_RS03755 0.20 -0.4 700,281 - MMJJ_RS03755 0.27 +0.3 700,281 - MMJJ_RS03755 0.27 +0.3 700,282 + MMJJ_RS03755 0.27 +2.9 700,282 + MMJJ_RS03755 0.27 +1.1 700,446 + MMJJ_RS03755 0.73 -0.8 700,446 + MMJJ_RS03755 0.73 +2.4 700,499 - MMJJ_RS03755 0.88 +1.0 700,523 - -1.9 700,589 + +2.1 700,596 - +2.9 700,598 - +1.6 700,598 - +1.8 700,598 - +1.0 700,599 + -0.2 700,600 - +0.5 700,601 + -0.4 700,601 + +1.4 700,601 + +1.2 700,604 + -0.1 700,635 - -2.3 700,636 + -2.1 700,681 - -1.2 700,685 - -2.9 700,685 - -4.1 700,685 - -0.6 700,695 - -1.3 700,695 - +2.1 700,695 - +2.0 700,695 - -1.9 700,696 + +3.2 700,696 + +3.7 700,696 + +0.3 700,696 + -0.9 700,696 + -3.1 700,697 - +1.1 700,698 + -1.0 700,698 + +2.9 700,698 + -0.8 700,698 + -1.0 700,698 + -0.9 700,712 + -0.3 700,727 + +2.1 700,727 + +1.1 700,730 - +1.9 700,731 + -1.7 700,778 - -1.4 700,808 + MMJJ_RS03760 0.17 +0.4 700,835 - -0.6 700,835 - MMJJ_RS03760 0.24 -1.2 700,863 + MMJJ_RS03760 0.32 +1.4 700,942 - MMJJ_RS03760 0.52 -1.2 700,946 + MMJJ_RS03760 0.54 -0.6 700,991 - MMJJ_RS03760 0.65 -0.6 701,021 - MMJJ_RS03760 0.73 -1.4 701,022 + MMJJ_RS03760 0.73 +1.4 701,023 - MMJJ_RS03760 0.74 -0.6 701,031 + +1.4 701,261 - MMJJ_RS03765 0.30 -0.6 701,261 - MMJJ_RS03765 0.30 -1.6 701,261 - MMJJ_RS03765 0.30 -0.2 701,262 + MMJJ_RS03765 0.30 -1.2 701,262 + MMJJ_RS03765 0.30 +0.2 701,285 + MMJJ_RS03765 0.35 -1.8 701,285 + MMJJ_RS03765 0.35 -1.9 701,288 - MMJJ_RS03765 0.36 -1.6 701,288 - MMJJ_RS03765 0.36 -0.9 701,289 + MMJJ_RS03765 0.36 -0.2 701,339 + MMJJ_RS03765 0.47 -0.6 701,339 + MMJJ_RS03765 0.47 +0.4 701,370 - MMJJ_RS03765 0.54 -2.4 701,373 - MMJJ_RS03765 0.54 +1.4 701,374 + MMJJ_RS03765 0.55 -0.9 701,374 + MMJJ_RS03765 0.55 -0.9 701,375 - MMJJ_RS03765 0.55 -1.8 701,375 - MMJJ_RS03765 0.55 -2.2 701,376 + MMJJ_RS03765 0.55 -1.2 701,379 - MMJJ_RS03765 0.56 -2.2 701,574 - +0.1 701,600 + -2.7 701,602 + -0.9 701,602 + -1.2 701,602 + +0.4 701,602 + +0.3 701,602 + -0.2 701,606 - -1.1 701,637 - -0.6 701,637 - +1.4 701,637 - +2.5 701,638 + -0.1 701,638 + +2.2 701,638 + -0.6 701,639 - -1.1 701,640 + +2.5 701,640 + +1.8 701,641 - +0.4 701,650 - +4.8 701,651 + -1.8 701,652 - +3.3 701,655 - +0.4 701,664 + -0.8 701,711 - -1.2 701,711 - -1.2 701,712 + +1.2 701,715 - -2.3 701,715 - +0.5 701,716 + +1.0 701,775 + -2.1 701,784 - -0.8 701,814 + -1.3 701,839 - +3.1 701,844 - +2.0 701,866 - -0.4 701,867 + +0.1 701,874 - MMJJ_RS03770 0.12 +1.4 701,874 - MMJJ_RS03770 0.12 -0.3 701,874 - MMJJ_RS03770 0.12 +0.5 701,875 + MMJJ_RS03770 0.13 -1.8 701,878 - MMJJ_RS03770 0.14 -0.1 701,878 - MMJJ_RS03770 0.14 +0.0 701,878 - MMJJ_RS03770 0.14 +0.3 701,879 + MMJJ_RS03770 0.14 +1.8 701,879 + MMJJ_RS03770 0.14 -1.2 701,879 + MMJJ_RS03770 0.14 -1.7 701,879 + MMJJ_RS03770 0.14 +1.8 701,879 + MMJJ_RS03770 0.14 +1.5 701,879 + MMJJ_RS03770 0.14 +1.2 701,879 + MMJJ_RS03770 0.14 -1.9 701,879 + MMJJ_RS03770 0.14 -1.3 701,879 + MMJJ_RS03770 0.14 +1.3 701,906 + MMJJ_RS03770 0.25 +0.4 701,921 + MMJJ_RS03770 0.31 -0.6 701,921 + MMJJ_RS03770 0.31 -2.8 701,921 + MMJJ_RS03770 0.31 -0.2 701,924 - MMJJ_RS03770 0.33 -1.4 701,924 - MMJJ_RS03770 0.33 -2.2 701,925 + MMJJ_RS03770 0.33 -2.1 701,942 - MMJJ_RS03770 0.40 -3.2 702,025 - MMJJ_RS03770 0.73 +0.7 702,031 - MMJJ_RS03770 0.76 +4.2 702,032 + MMJJ_RS03770 0.76 +1.6 702,032 + MMJJ_RS03770 0.76 -2.5 702,053 - MMJJ_RS03770 0.84 -1.0 702,053 - MMJJ_RS03770 0.84 -1.3 702,054 + MMJJ_RS03770 0.85 +2.8 702,094 - +1.4 702,095 + +2.3 702,107 + -0.9 702,125 - +1.4 702,126 + +3.0 702,136 - +1.7 702,136 - +1.8 702,149 - -1.2 702,149 - +2.1 702,150 + -1.4 702,150 + -1.4 702,152 - -0.2 702,153 + +2.0 702,153 + -0.6 702,157 - +0.0 702,158 + +1.3 702,176 - +0.6 702,177 + +1.8 702,180 - -3.9 702,184 + +0.3 702,184 + -0.2 702,196 - -0.5 702,209 - -0.3 702,209 - -2.8 702,209 - -0.5 702,209 - +1.3 702,210 + -2.3 702,210 + -1.2 702,210 + -4.3 702,210 + +0.4 702,211 - -1.1 702,211 - -1.9 702,211 - -1.3 702,211 - +0.3 702,211 - +3.3 702,211 - +0.5 702,211 - -0.2 702,212 + +2.5 702,212 + -0.3 702,212 + +2.2 702,212 + +0.8 702,212 + +1.3 702,212 + +0.5 702,212 + +2.5 702,212 + -0.5 702,213 - +1.8 702,213 - +0.8 702,213 - -1.2 702,213 - -1.5 702,213 - +1.7 702,213 - +1.1 702,214 + +0.1 702,214 + -0.7 702,214 + +0.9 702,214 + +3.2 702,214 + +1.7 702,214 + -2.4 702,216 - -1.2 702,216 - -1.6 702,217 + +2.6 702,236 - +0.1 702,236 - -1.1 702,266 - -2.0 702,266 - +2.5 702,295 - -2.8 702,298 + -1.3 702,321 - +0.0 702,330 + +1.4 702,333 + +2.0 702,333 + -2.8 702,344 - -1.2 702,348 + +1.1 702,372 - -1.2 702,382 - +3.7 702,401 + +0.5 702,417 - -0.9 702,429 - +4.9 702,429 - +3.4 702,430 + +0.4 702,430 + -0.2 702,430 + -0.9 702,430 + +2.6 702,433 - -1.6 702,433 - +3.1 702,434 + +0.6 702,434 + +3.6 702,435 - +1.1 702,435 - -0.5 702,436 + -1.9 702,436 + -2.4 702,436 + -0.6 702,436 + +1.8 702,436 + +2.8 702,440 - +3.2 702,440 - -2.3 702,441 + -2.9 702,441 + +0.6 702,441 + +2.0 702,441 + -1.6 702,441 + -0.0 702,444 - -0.2 702,444 - +3.2 702,444 - -1.1 702,444 - -1.6 702,444 - +1.4 702,444 - -1.8 702,445 + -0.8 702,445 + -1.1 702,445 + -0.9 702,446 - +3.7 702,446 - -2.5 702,446 - +0.2 702,446 - -0.9 702,446 - -0.8 702,446 - +0.9 702,446 - +1.9 702,447 + -2.8 702,447 + -0.9 702,447 + +1.4 702,449 - -0.7 702,450 + +2.7 702,450 + -0.0 702,458 - -3.1 702,478 - -1.9 702,501 + -0.2 702,549 - +0.7 702,549 - +2.4 702,574 - -0.4 702,574 - -1.5 702,581 - -1.9 702,582 + +3.9
Or see this region's nucleotide sequence