Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03745 and MMJJ_RS03750 are separated by 65 nucleotides MMJJ_RS03750 and MMJJ_RS03755 are separated by 20 nucleotides MMJJ_RS03755 and MMJJ_RS03760 are separated by 198 nucleotides MMJJ_RS03760 and MMJJ_RS03765 overlap by 1 nucleotides MMJJ_RS03765 and MMJJ_RS03770 are separated by 259 nucleotides
MMJJ_RS03745: MMJJ_RS03745 - N-glycosylase/DNA lyase, at 699,202 to 699,960
_RS03745
MMJJ_RS03750: MMJJ_RS03750 - rubredoxin, at 700,026 to 700,163
_RS03750
MMJJ_RS03755: MMJJ_RS03755 - hypothetical protein, at 700,184 to 700,543
_RS03755
MMJJ_RS03760: MMJJ_RS03760 - hydrogenase maturation nickel metallochaperone HypA, at 700,742 to 701,122
_RS03760
MMJJ_RS03765: MMJJ_RS03765 - hypothetical protein, at 701,122 to 701,583
_RS03765
MMJJ_RS03770: MMJJ_RS03770 - hypothetical protein, at 701,843 to 702,091
_RS03770
Position (kb) 700
701
702 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 699.773 kb on + strand, within MMJJ_RS03745 at 699.773 kb on + strand, within MMJJ_RS03745 at 699.849 kb on + strand, within MMJJ_RS03745 at 699.854 kb on - strand, within MMJJ_RS03745 at 699.855 kb on + strand, within MMJJ_RS03745 at 699.866 kb on - strand, within MMJJ_RS03745 at 699.935 kb on + strand at 699.938 kb on - strand at 699.939 kb on + strand at 699.939 kb on + strand at 699.942 kb on - strand at 699.956 kb on - strand at 699.957 kb on + strand at 699.964 kb on + strand at 699.977 kb on - strand at 699.979 kb on - strand at 699.980 kb on + strand at 700.004 kb on - strand at 700.019 kb on + strand at 700.025 kb on - strand at 700.026 kb on + strand at 700.049 kb on + strand, within MMJJ_RS03750 at 700.057 kb on + strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.060 kb on - strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand, within MMJJ_RS03750 at 700.061 kb on + strand at 700.061 kb on + strand, within MMJJ_RS03750 at 700.062 kb on - strand, within MMJJ_RS03750 at 700.062 kb on - strand, within MMJJ_RS03750 at 700.062 kb on - strand, within MMJJ_RS03750 at 700.063 kb on + strand, within MMJJ_RS03750 at 700.162 kb on + strand at 700.192 kb on + strand at 700.192 kb on - strand at 700.209 kb on - strand at 700.209 kb on - strand at 700.210 kb on + strand at 700.210 kb on + strand at 700.210 kb on + strand at 700.210 kb on + strand at 700.210 kb on + strand at 700.214 kb on - strand at 700.215 kb on + strand at 700.218 kb on - strand at 700.219 kb on + strand at 700.219 kb on + strand at 700.256 kb on - strand, within MMJJ_RS03755 at 700.281 kb on - strand, within MMJJ_RS03755 at 700.281 kb on - strand, within MMJJ_RS03755 at 700.282 kb on + strand, within MMJJ_RS03755 at 700.282 kb on + strand, within MMJJ_RS03755 at 700.446 kb on + strand, within MMJJ_RS03755 at 700.446 kb on + strand, within MMJJ_RS03755 at 700.499 kb on - strand, within MMJJ_RS03755 at 700.523 kb on - strand at 700.589 kb on + strand at 700.596 kb on - strand at 700.598 kb on - strand at 700.598 kb on - strand at 700.598 kb on - strand at 700.599 kb on + strand at 700.600 kb on - strand at 700.601 kb on + strand at 700.601 kb on + strand at 700.601 kb on + strand at 700.604 kb on + strand at 700.635 kb on - strand at 700.636 kb on + strand at 700.681 kb on - strand at 700.685 kb on - strand at 700.685 kb on - strand at 700.685 kb on - strand at 700.695 kb on - strand at 700.695 kb on - strand at 700.695 kb on - strand at 700.695 kb on - strand at 700.696 kb on + strand at 700.696 kb on + strand at 700.696 kb on + strand at 700.696 kb on + strand at 700.696 kb on + strand at 700.697 kb on - strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.698 kb on + strand at 700.712 kb on + strand at 700.727 kb on + strand at 700.727 kb on + strand at 700.730 kb on - strand at 700.731 kb on + strand at 700.778 kb on - strand at 700.808 kb on + strand, within MMJJ_RS03760 at 700.835 kb on - strand at 700.835 kb on - strand, within MMJJ_RS03760 at 700.863 kb on + strand, within MMJJ_RS03760 at 700.942 kb on - strand, within MMJJ_RS03760 at 700.946 kb on + strand, within MMJJ_RS03760 at 700.991 kb on - strand, within MMJJ_RS03760 at 701.021 kb on - strand, within MMJJ_RS03760 at 701.022 kb on + strand, within MMJJ_RS03760 at 701.023 kb on - strand, within MMJJ_RS03760 at 701.031 kb on + strand at 701.261 kb on - strand, within MMJJ_RS03765 at 701.261 kb on - strand, within MMJJ_RS03765 at 701.261 kb on - strand, within MMJJ_RS03765 at 701.262 kb on + strand, within MMJJ_RS03765 at 701.262 kb on + strand, within MMJJ_RS03765 at 701.285 kb on + strand, within MMJJ_RS03765 at 701.285 kb on + strand, within MMJJ_RS03765 at 701.288 kb on - strand, within MMJJ_RS03765 at 701.288 kb on - strand, within MMJJ_RS03765 at 701.289 kb on + strand, within MMJJ_RS03765 at 701.339 kb on + strand, within MMJJ_RS03765 at 701.339 kb on + strand, within MMJJ_RS03765 at 701.370 kb on - strand, within MMJJ_RS03765 at 701.373 kb on - strand, within MMJJ_RS03765 at 701.374 kb on + strand, within MMJJ_RS03765 at 701.374 kb on + strand, within MMJJ_RS03765 at 701.375 kb on - strand, within MMJJ_RS03765 at 701.375 kb on - strand, within MMJJ_RS03765 at 701.376 kb on + strand, within MMJJ_RS03765 at 701.379 kb on - strand, within MMJJ_RS03765 at 701.574 kb on - strand at 701.600 kb on + strand at 701.602 kb on + strand at 701.602 kb on + strand at 701.602 kb on + strand at 701.602 kb on + strand at 701.602 kb on + strand at 701.606 kb on - strand at 701.637 kb on - strand at 701.637 kb on - strand at 701.637 kb on - strand at 701.638 kb on + strand at 701.638 kb on + strand at 701.638 kb on + strand at 701.639 kb on - strand at 701.640 kb on + strand at 701.640 kb on + strand at 701.641 kb on - strand at 701.650 kb on - strand at 701.651 kb on + strand at 701.652 kb on - strand at 701.655 kb on - strand at 701.664 kb on + strand at 701.711 kb on - strand at 701.711 kb on - strand at 701.712 kb on + strand at 701.715 kb on - strand at 701.715 kb on - strand at 701.716 kb on + strand at 701.775 kb on + strand at 701.784 kb on - strand at 701.814 kb on + strand at 701.839 kb on - strand at 701.844 kb on - strand at 701.866 kb on - strand at 701.867 kb on + strand at 701.874 kb on - strand, within MMJJ_RS03770 at 701.874 kb on - strand, within MMJJ_RS03770 at 701.874 kb on - strand, within MMJJ_RS03770 at 701.875 kb on + strand, within MMJJ_RS03770 at 701.878 kb on - strand, within MMJJ_RS03770 at 701.878 kb on - strand, within MMJJ_RS03770 at 701.878 kb on - strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.879 kb on + strand, within MMJJ_RS03770 at 701.906 kb on + strand, within MMJJ_RS03770 at 701.921 kb on + strand, within MMJJ_RS03770 at 701.921 kb on + strand, within MMJJ_RS03770 at 701.921 kb on + strand, within MMJJ_RS03770 at 701.924 kb on - strand, within MMJJ_RS03770 at 701.924 kb on - strand, within MMJJ_RS03770 at 701.925 kb on + strand, within MMJJ_RS03770 at 701.942 kb on - strand, within MMJJ_RS03770 at 702.025 kb on - strand, within MMJJ_RS03770 at 702.031 kb on - strand, within MMJJ_RS03770 at 702.032 kb on + strand, within MMJJ_RS03770 at 702.032 kb on + strand, within MMJJ_RS03770 at 702.053 kb on - strand, within MMJJ_RS03770 at 702.053 kb on - strand, within MMJJ_RS03770 at 702.054 kb on + strand, within MMJJ_RS03770 at 702.094 kb on - strand at 702.095 kb on + strand at 702.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 699,773 + MMJJ_RS03745 0.75 -1.9 699,773 + MMJJ_RS03745 0.75 +0.1 699,849 + MMJJ_RS03745 0.85 +0.8 699,854 - MMJJ_RS03745 0.86 -0.1 699,855 + MMJJ_RS03745 0.86 +2.7 699,866 - MMJJ_RS03745 0.87 -1.1 699,935 + -0.3 699,938 - +3.1 699,939 + -2.2 699,939 + +0.6 699,942 - -0.5 699,956 - -1.7 699,957 + -0.0 699,964 + +3.1 699,977 - +0.4 699,979 - +2.8 699,980 + +1.5 700,004 - -2.4 700,019 + +0.6 700,025 - +2.2 700,026 + +3.3 700,049 + MMJJ_RS03750 0.17 -2.2 700,057 + MMJJ_RS03750 0.22 -0.1 700,060 - MMJJ_RS03750 0.25 +0.8 700,060 - MMJJ_RS03750 0.25 +0.8 700,060 - +0.4 700,060 - MMJJ_RS03750 0.25 -1.7 700,060 - MMJJ_RS03750 0.25 +1.0 700,060 - MMJJ_RS03750 0.25 +2.0 700,060 - MMJJ_RS03750 0.25 +2.0 700,060 - MMJJ_RS03750 0.25 +1.3 700,060 - MMJJ_RS03750 0.25 +2.4 700,060 - MMJJ_RS03750 0.25 +1.1 700,060 - MMJJ_RS03750 0.25 +2.9 700,060 - MMJJ_RS03750 0.25 +1.2 700,060 - MMJJ_RS03750 0.25 +1.8 700,061 + MMJJ_RS03750 0.25 +1.3 700,061 + MMJJ_RS03750 0.25 +0.6 700,061 + MMJJ_RS03750 0.25 -0.2 700,061 + MMJJ_RS03750 0.25 +1.6 700,061 + MMJJ_RS03750 0.25 +0.8 700,061 + MMJJ_RS03750 0.25 -1.1 700,061 + MMJJ_RS03750 0.25 -3.1 700,061 + MMJJ_RS03750 0.25 +0.4 700,061 + MMJJ_RS03750 0.25 +2.5 700,061 + MMJJ_RS03750 0.25 -0.7 700,061 + MMJJ_RS03750 0.25 +4.3 700,061 + MMJJ_RS03750 0.25 -0.3 700,061 + MMJJ_RS03750 0.25 +5.2 700,061 + MMJJ_RS03750 0.25 -0.4 700,061 + -0.2 700,061 + MMJJ_RS03750 0.25 -0.4 700,062 - MMJJ_RS03750 0.26 -1.9 700,062 - MMJJ_RS03750 0.26 +1.4 700,062 - MMJJ_RS03750 0.26 +0.2 700,063 + MMJJ_RS03750 0.27 -2.8 700,162 + -0.9 700,192 + +2.9 700,192 - -1.2 700,209 - +2.6 700,209 - -1.2 700,210 + -1.4 700,210 + -1.4 700,210 + -1.3 700,210 + -0.6 700,210 + -0.9 700,214 - -1.4 700,215 + +1.3 700,218 - +1.4 700,219 + +2.2 700,219 + +2.4 700,256 - MMJJ_RS03755 0.20 -0.4 700,281 - MMJJ_RS03755 0.27 +0.3 700,281 - MMJJ_RS03755 0.27 +0.3 700,282 + MMJJ_RS03755 0.27 +2.9 700,282 + MMJJ_RS03755 0.27 +1.1 700,446 + MMJJ_RS03755 0.73 -0.8 700,446 + MMJJ_RS03755 0.73 +2.4 700,499 - MMJJ_RS03755 0.88 +1.0 700,523 - -1.9 700,589 + +2.1 700,596 - +2.9 700,598 - +1.6 700,598 - +1.8 700,598 - +1.0 700,599 + -0.2 700,600 - +0.5 700,601 + -0.4 700,601 + +1.4 700,601 + +1.2 700,604 + -0.1 700,635 - -2.3 700,636 + -2.1 700,681 - -1.2 700,685 - -2.9 700,685 - -4.1 700,685 - -0.6 700,695 - -1.3 700,695 - +2.1 700,695 - +2.0 700,695 - -1.9 700,696 + +3.2 700,696 + +3.7 700,696 + +0.3 700,696 + -0.9 700,696 + -3.1 700,697 - +1.1 700,698 + -1.0 700,698 + +2.9 700,698 + -0.8 700,698 + -1.0 700,698 + -0.9 700,712 + -0.3 700,727 + +2.1 700,727 + +1.1 700,730 - +1.9 700,731 + -1.7 700,778 - -1.4 700,808 + MMJJ_RS03760 0.17 +0.4 700,835 - -0.6 700,835 - MMJJ_RS03760 0.24 -1.2 700,863 + MMJJ_RS03760 0.32 +1.4 700,942 - MMJJ_RS03760 0.52 -1.2 700,946 + MMJJ_RS03760 0.54 -0.6 700,991 - MMJJ_RS03760 0.65 -0.6 701,021 - MMJJ_RS03760 0.73 -1.4 701,022 + MMJJ_RS03760 0.73 +1.4 701,023 - MMJJ_RS03760 0.74 -0.6 701,031 + +1.4 701,261 - MMJJ_RS03765 0.30 -0.6 701,261 - MMJJ_RS03765 0.30 -1.6 701,261 - MMJJ_RS03765 0.30 -0.2 701,262 + MMJJ_RS03765 0.30 -1.2 701,262 + MMJJ_RS03765 0.30 +0.2 701,285 + MMJJ_RS03765 0.35 -1.8 701,285 + MMJJ_RS03765 0.35 -1.9 701,288 - MMJJ_RS03765 0.36 -1.6 701,288 - MMJJ_RS03765 0.36 -0.9 701,289 + MMJJ_RS03765 0.36 -0.2 701,339 + MMJJ_RS03765 0.47 -0.6 701,339 + MMJJ_RS03765 0.47 +0.4 701,370 - MMJJ_RS03765 0.54 -2.4 701,373 - MMJJ_RS03765 0.54 +1.4 701,374 + MMJJ_RS03765 0.55 -0.9 701,374 + MMJJ_RS03765 0.55 -0.9 701,375 - MMJJ_RS03765 0.55 -1.8 701,375 - MMJJ_RS03765 0.55 -2.2 701,376 + MMJJ_RS03765 0.55 -1.2 701,379 - MMJJ_RS03765 0.56 -2.2 701,574 - +0.1 701,600 + -2.7 701,602 + -0.9 701,602 + -1.2 701,602 + +0.4 701,602 + +0.3 701,602 + -0.2 701,606 - -1.1 701,637 - -0.6 701,637 - +1.4 701,637 - +2.5 701,638 + -0.1 701,638 + +2.2 701,638 + -0.6 701,639 - -1.1 701,640 + +2.5 701,640 + +1.8 701,641 - +0.4 701,650 - +4.8 701,651 + -1.8 701,652 - +3.3 701,655 - +0.4 701,664 + -0.8 701,711 - -1.2 701,711 - -1.2 701,712 + +1.2 701,715 - -2.3 701,715 - +0.5 701,716 + +1.0 701,775 + -2.1 701,784 - -0.8 701,814 + -1.3 701,839 - +3.1 701,844 - +2.0 701,866 - -0.4 701,867 + +0.1 701,874 - MMJJ_RS03770 0.12 +1.4 701,874 - MMJJ_RS03770 0.12 -0.3 701,874 - MMJJ_RS03770 0.12 +0.5 701,875 + MMJJ_RS03770 0.13 -1.8 701,878 - MMJJ_RS03770 0.14 -0.1 701,878 - MMJJ_RS03770 0.14 +0.0 701,878 - MMJJ_RS03770 0.14 +0.3 701,879 + MMJJ_RS03770 0.14 +1.8 701,879 + MMJJ_RS03770 0.14 -1.2 701,879 + MMJJ_RS03770 0.14 -1.7 701,879 + MMJJ_RS03770 0.14 +1.8 701,879 + MMJJ_RS03770 0.14 +1.5 701,879 + MMJJ_RS03770 0.14 +1.2 701,879 + MMJJ_RS03770 0.14 -1.9 701,879 + MMJJ_RS03770 0.14 -1.3 701,879 + MMJJ_RS03770 0.14 +1.3 701,906 + MMJJ_RS03770 0.25 +0.4 701,921 + MMJJ_RS03770 0.31 -0.6 701,921 + MMJJ_RS03770 0.31 -2.8 701,921 + MMJJ_RS03770 0.31 -0.2 701,924 - MMJJ_RS03770 0.33 -1.4 701,924 - MMJJ_RS03770 0.33 -2.2 701,925 + MMJJ_RS03770 0.33 -2.1 701,942 - MMJJ_RS03770 0.40 -3.2 702,025 - MMJJ_RS03770 0.73 +0.7 702,031 - MMJJ_RS03770 0.76 +4.2 702,032 + MMJJ_RS03770 0.76 +1.6 702,032 + MMJJ_RS03770 0.76 -2.5 702,053 - MMJJ_RS03770 0.84 -1.0 702,053 - MMJJ_RS03770 0.84 -1.3 702,054 + MMJJ_RS03770 0.85 +2.8 702,094 - +1.4 702,095 + +2.3 702,107 + -0.9
Or see this region's nucleotide sequence