Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03725 and MMJJ_RS03730 are separated by 156 nucleotides MMJJ_RS03730 and MMJJ_RS03735 are separated by 72 nucleotides MMJJ_RS03735 and MMJJ_RS03740 are separated by 5 nucleotides MMJJ_RS03740 and MMJJ_RS03745 are separated by 46 nucleotides
MMJJ_RS03725: MMJJ_RS03725 - sulfurtransferase TusA family protein, at 695,446 to 695,658
_RS03725
MMJJ_RS03730: MMJJ_RS03730 - SWIM zinc finger family protein, at 695,815 to 696,504
_RS03730
MMJJ_RS03735: MMJJ_RS03735 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 696,577 to 698,289
_RS03735
MMJJ_RS03740: MMJJ_RS03740 - thiamine pyrophosphate-dependent enzyme, at 698,295 to 699,155
_RS03740
MMJJ_RS03745: MMJJ_RS03745 - N-glycosylase/DNA lyase, at 699,202 to 699,960
_RS03745
Position (kb) 696
697
698
699 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 695.632 kb on - strand, within MMJJ_RS03725 at 695.681 kb on - strand at 695.687 kb on - strand at 695.732 kb on + strand at 695.747 kb on + strand at 695.755 kb on + strand at 695.763 kb on - strand at 695.763 kb on - strand at 695.763 kb on - strand at 695.763 kb on - strand at 695.763 kb on - strand at 695.764 kb on + strand at 695.764 kb on + strand at 695.764 kb on + strand at 695.764 kb on + strand at 695.768 kb on + strand at 695.771 kb on - strand at 695.784 kb on - strand at 695.837 kb on - strand at 695.838 kb on + strand at 695.838 kb on + strand at 695.844 kb on + strand at 695.863 kb on - strand at 695.864 kb on + strand at 695.864 kb on + strand at 695.883 kb on + strand at 695.917 kb on + strand, within MMJJ_RS03730 at 695.956 kb on - strand, within MMJJ_RS03730 at 695.968 kb on - strand, within MMJJ_RS03730 at 695.999 kb on - strand, within MMJJ_RS03730 at 696.000 kb on + strand, within MMJJ_RS03730 at 696.000 kb on + strand, within MMJJ_RS03730 at 696.000 kb on + strand, within MMJJ_RS03730 at 696.085 kb on + strand, within MMJJ_RS03730 at 696.229 kb on - strand, within MMJJ_RS03730 at 696.321 kb on + strand, within MMJJ_RS03730 at 696.488 kb on - strand at 696.488 kb on - strand at 696.488 kb on - strand at 696.488 kb on - strand at 696.488 kb on - strand at 696.488 kb on - strand at 696.488 kb on - strand at 696.488 kb on - strand at 696.488 kb on - strand at 696.488 kb on - strand at 696.489 kb on + strand at 696.489 kb on + strand at 696.489 kb on + strand at 696.489 kb on + strand at 696.489 kb on + strand at 696.489 kb on + strand at 696.489 kb on + strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.490 kb on - strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.491 kb on + strand at 696.528 kb on - strand at 696.528 kb on - strand at 696.528 kb on - strand at 696.530 kb on - strand at 696.532 kb on - strand at 696.532 kb on - strand at 696.532 kb on - strand at 696.533 kb on + strand at 696.533 kb on + strand at 696.533 kb on + strand at 696.533 kb on + strand at 696.534 kb on - strand at 696.534 kb on - strand at 696.535 kb on + strand at 696.550 kb on - strand at 696.550 kb on - strand at 696.550 kb on - strand at 696.550 kb on - strand at 696.551 kb on + strand at 696.551 kb on + strand at 696.551 kb on + strand at 696.552 kb on - strand at 696.553 kb on + strand at 696.553 kb on + strand at 696.558 kb on - strand at 696.558 kb on - strand at 696.558 kb on - strand at 696.576 kb on - strand at 696.577 kb on + strand at 696.632 kb on - strand at 696.663 kb on + strand at 696.679 kb on - strand at 696.679 kb on - strand at 696.680 kb on + strand at 696.680 kb on + strand at 696.686 kb on - strand at 696.686 kb on - strand at 696.686 kb on - strand at 696.687 kb on + strand at 696.694 kb on + strand at 696.703 kb on - strand at 696.704 kb on + strand at 696.704 kb on + strand at 696.704 kb on + strand at 696.746 kb on - strand at 696.746 kb on - strand at 696.849 kb on - strand, within MMJJ_RS03735 at 696.876 kb on - strand, within MMJJ_RS03735 at 696.932 kb on - strand, within MMJJ_RS03735 at 696.933 kb on + strand, within MMJJ_RS03735 at 696.933 kb on + strand, within MMJJ_RS03735 at 696.987 kb on + strand, within MMJJ_RS03735 at 697.080 kb on + strand, within MMJJ_RS03735 at 697.100 kb on + strand at 697.118 kb on - strand, within MMJJ_RS03735 at 697.137 kb on + strand, within MMJJ_RS03735 at 697.137 kb on + strand, within MMJJ_RS03735 at 697.184 kb on - strand, within MMJJ_RS03735 at 697.191 kb on - strand, within MMJJ_RS03735 at 697.230 kb on - strand, within MMJJ_RS03735 at 697.230 kb on - strand, within MMJJ_RS03735 at 697.231 kb on + strand, within MMJJ_RS03735 at 697.311 kb on - strand, within MMJJ_RS03735 at 697.311 kb on - strand, within MMJJ_RS03735 at 697.316 kb on - strand, within MMJJ_RS03735 at 697.317 kb on + strand, within MMJJ_RS03735 at 697.350 kb on - strand, within MMJJ_RS03735 at 697.350 kb on - strand, within MMJJ_RS03735 at 697.392 kb on - strand, within MMJJ_RS03735 at 697.392 kb on - strand, within MMJJ_RS03735 at 697.396 kb on + strand, within MMJJ_RS03735 at 697.470 kb on + strand, within MMJJ_RS03735 at 697.471 kb on - strand, within MMJJ_RS03735 at 697.471 kb on - strand, within MMJJ_RS03735 at 697.532 kb on - strand, within MMJJ_RS03735 at 697.570 kb on + strand, within MMJJ_RS03735 at 697.575 kb on - strand, within MMJJ_RS03735 at 697.578 kb on + strand, within MMJJ_RS03735 at 697.578 kb on + strand, within MMJJ_RS03735 at 697.614 kb on + strand, within MMJJ_RS03735 at 697.679 kb on + strand, within MMJJ_RS03735 at 697.693 kb on - strand, within MMJJ_RS03735 at 697.761 kb on + strand, within MMJJ_RS03735 at 697.872 kb on - strand, within MMJJ_RS03735 at 697.876 kb on + strand, within MMJJ_RS03735 at 697.929 kb on + strand, within MMJJ_RS03735 at 697.935 kb on + strand, within MMJJ_RS03735 at 697.981 kb on - strand, within MMJJ_RS03735 at 698.017 kb on - strand, within MMJJ_RS03735 at 698.025 kb on + strand, within MMJJ_RS03735 at 698.058 kb on - strand, within MMJJ_RS03735 at 698.059 kb on + strand, within MMJJ_RS03735 at 698.142 kb on - strand at 698.142 kb on - strand at 698.151 kb on + strand at 698.212 kb on + strand at 698.214 kb on - strand at 698.220 kb on + strand at 698.329 kb on - strand at 698.329 kb on - strand at 698.330 kb on + strand at 698.333 kb on - strand at 698.334 kb on + strand at 698.334 kb on + strand at 698.334 kb on + strand at 698.357 kb on - strand at 698.358 kb on + strand at 698.369 kb on + strand at 698.466 kb on - strand, within MMJJ_RS03740 at 698.466 kb on - strand, within MMJJ_RS03740 at 698.470 kb on - strand, within MMJJ_RS03740 at 698.470 kb on - strand, within MMJJ_RS03740 at 698.477 kb on + strand, within MMJJ_RS03740 at 698.550 kb on + strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.583 kb on - strand, within MMJJ_RS03740 at 698.584 kb on + strand, within MMJJ_RS03740 at 698.584 kb on + strand, within MMJJ_RS03740 at 698.584 kb on + strand, within MMJJ_RS03740 at 698.584 kb on + strand, within MMJJ_RS03740 at 698.644 kb on - strand, within MMJJ_RS03740 at 698.645 kb on + strand, within MMJJ_RS03740 at 698.645 kb on + strand, within MMJJ_RS03740 at 698.655 kb on + strand, within MMJJ_RS03740 at 698.662 kb on - strand, within MMJJ_RS03740 at 698.663 kb on + strand, within MMJJ_RS03740 at 698.663 kb on + strand, within MMJJ_RS03740 at 698.663 kb on + strand, within MMJJ_RS03740 at 698.663 kb on + strand, within MMJJ_RS03740 at 698.665 kb on + strand, within MMJJ_RS03740 at 698.780 kb on + strand, within MMJJ_RS03740 at 698.839 kb on - strand, within MMJJ_RS03740 at 698.844 kb on + strand, within MMJJ_RS03740 at 698.872 kb on - strand, within MMJJ_RS03740 at 698.875 kb on - strand, within MMJJ_RS03740 at 698.879 kb on - strand, within MMJJ_RS03740 at 698.879 kb on - strand, within MMJJ_RS03740 at 698.879 kb on - strand, within MMJJ_RS03740 at 698.912 kb on + strand, within MMJJ_RS03740 at 698.928 kb on - strand, within MMJJ_RS03740 at 698.965 kb on - strand, within MMJJ_RS03740 at 698.965 kb on - strand, within MMJJ_RS03740 at 698.966 kb on + strand, within MMJJ_RS03740 at 698.966 kb on + strand, within MMJJ_RS03740 at 698.969 kb on - strand, within MMJJ_RS03740 at 699.030 kb on - strand, within MMJJ_RS03740 at 699.072 kb on - strand at 699.073 kb on + strand at 699.073 kb on + strand at 699.157 kb on + strand at 699.167 kb on - strand at 699.167 kb on - strand at 699.167 kb on - strand at 699.168 kb on + strand at 699.168 kb on + strand at 699.168 kb on + strand at 699.171 kb on - strand at 699.179 kb on - strand at 699.240 kb on + strand at 699.267 kb on - strand at 699.271 kb on - strand at 699.271 kb on - strand at 699.271 kb on - strand at 699.271 kb on - strand at 699.271 kb on - strand at 699.272 kb on + strand at 699.272 kb on + strand at 699.272 kb on + strand at 699.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 695,632 - MMJJ_RS03725 0.87 -0.3 695,681 - -2.6 695,687 - -3.4 695,732 + -1.7 695,747 + +1.5 695,755 + -0.3 695,763 - -4.0 695,763 - -2.1 695,763 - -1.9 695,763 - -1.0 695,763 - -2.0 695,764 + +1.3 695,764 + +0.7 695,764 + -1.4 695,764 + -1.5 695,768 + -1.8 695,771 - -2.0 695,784 - -0.6 695,837 - -3.4 695,838 + +1.3 695,838 + -0.5 695,844 + -0.7 695,863 - -1.7 695,864 + -0.9 695,864 + -0.6 695,883 + +2.1 695,917 + MMJJ_RS03730 0.15 +2.1 695,956 - MMJJ_RS03730 0.20 +0.1 695,968 - MMJJ_RS03730 0.22 +0.2 695,999 - MMJJ_RS03730 0.27 +1.4 696,000 + MMJJ_RS03730 0.27 +4.5 696,000 + MMJJ_RS03730 0.27 +0.6 696,000 + MMJJ_RS03730 0.27 +5.4 696,085 + MMJJ_RS03730 0.39 +0.8 696,229 - MMJJ_RS03730 0.60 -0.6 696,321 + MMJJ_RS03730 0.73 -3.1 696,488 - +1.9 696,488 - -0.5 696,488 - +3.5 696,488 - +3.7 696,488 - -0.3 696,488 - +0.4 696,488 - -1.3 696,488 - +0.0 696,488 - -2.0 696,488 - -0.7 696,489 + +3.1 696,489 + -2.0 696,489 + -2.2 696,489 + -1.6 696,489 + -2.1 696,489 + -2.4 696,489 + +0.9 696,490 - +4.2 696,490 - -1.7 696,490 - +2.7 696,490 - -2.1 696,490 - +3.5 696,490 - -0.9 696,490 - +0.7 696,490 - -0.1 696,490 - -2.6 696,490 - +0.7 696,490 - +1.0 696,490 - -0.6 696,490 - +0.6 696,490 - +1.0 696,491 + -1.7 696,491 + +1.7 696,491 + -0.2 696,491 + -0.2 696,491 + +0.5 696,491 + +2.4 696,491 + -1.8 696,491 + +2.1 696,491 + -4.1 696,491 + -1.2 696,491 + -3.3 696,528 - -0.9 696,528 - +1.4 696,528 - +1.3 696,530 - -2.6 696,532 - +0.0 696,532 - +0.2 696,532 - -0.9 696,533 + +0.7 696,533 + -1.4 696,533 + +1.7 696,533 + -1.8 696,534 - -0.5 696,534 - -0.3 696,535 + -0.7 696,550 - -0.6 696,550 - -1.0 696,550 - -2.4 696,550 - +3.2 696,551 + -2.3 696,551 + -2.1 696,551 + +0.5 696,552 - +1.0 696,553 + -3.6 696,553 + +1.2 696,558 - +2.6 696,558 - -0.2 696,558 - +1.5 696,576 - +1.0 696,577 + +1.2 696,632 - +0.3 696,663 + -0.5 696,679 - +0.4 696,679 - +2.9 696,680 + +0.9 696,680 + -2.4 696,686 - +2.5 696,686 - -0.9 696,686 - -0.5 696,687 + +0.4 696,694 + -2.1 696,703 - -1.9 696,704 + +2.1 696,704 + -0.7 696,704 + +0.4 696,746 - -0.1 696,746 - -0.2 696,849 - MMJJ_RS03735 0.16 +2.1 696,876 - MMJJ_RS03735 0.17 -0.4 696,932 - MMJJ_RS03735 0.21 +1.8 696,933 + MMJJ_RS03735 0.21 +1.0 696,933 + MMJJ_RS03735 0.21 +0.7 696,987 + MMJJ_RS03735 0.24 +2.0 697,080 + MMJJ_RS03735 0.29 +0.4 697,100 + -0.6 697,118 - MMJJ_RS03735 0.32 +2.9 697,137 + MMJJ_RS03735 0.33 -0.3 697,137 + MMJJ_RS03735 0.33 -1.0 697,184 - MMJJ_RS03735 0.35 -0.9 697,191 - MMJJ_RS03735 0.36 -3.0 697,230 - MMJJ_RS03735 0.38 +4.5 697,230 - MMJJ_RS03735 0.38 -0.2 697,231 + MMJJ_RS03735 0.38 +0.6 697,311 - MMJJ_RS03735 0.43 -1.9 697,311 - MMJJ_RS03735 0.43 +1.4 697,316 - MMJJ_RS03735 0.43 +2.1 697,317 + MMJJ_RS03735 0.43 +1.9 697,350 - MMJJ_RS03735 0.45 +3.9 697,350 - MMJJ_RS03735 0.45 -2.0 697,392 - MMJJ_RS03735 0.48 +3.0 697,392 - MMJJ_RS03735 0.48 -0.6 697,396 + MMJJ_RS03735 0.48 -1.2 697,470 + MMJJ_RS03735 0.52 -0.9 697,471 - MMJJ_RS03735 0.52 -0.4 697,471 - MMJJ_RS03735 0.52 +1.3 697,532 - MMJJ_RS03735 0.56 +0.5 697,570 + MMJJ_RS03735 0.58 -0.5 697,575 - MMJJ_RS03735 0.58 -0.7 697,578 + MMJJ_RS03735 0.58 -0.9 697,578 + MMJJ_RS03735 0.58 -1.4 697,614 + MMJJ_RS03735 0.61 -1.5 697,679 + MMJJ_RS03735 0.64 +1.2 697,693 - MMJJ_RS03735 0.65 +0.9 697,761 + MMJJ_RS03735 0.69 +2.5 697,872 - MMJJ_RS03735 0.76 -1.4 697,876 + MMJJ_RS03735 0.76 -1.8 697,929 + MMJJ_RS03735 0.79 -0.5 697,935 + MMJJ_RS03735 0.79 +2.3 697,981 - MMJJ_RS03735 0.82 +2.1 698,017 - MMJJ_RS03735 0.84 +3.6 698,025 + MMJJ_RS03735 0.85 -0.6 698,058 - MMJJ_RS03735 0.86 +1.0 698,059 + MMJJ_RS03735 0.87 +2.4 698,142 - -1.4 698,142 - +1.4 698,151 + -1.4 698,212 + -0.2 698,214 - -0.9 698,220 + -1.6 698,329 - -2.0 698,329 - -0.2 698,330 + +2.2 698,333 - -1.4 698,334 + -2.6 698,334 + +0.5 698,334 + -0.6 698,357 - -1.6 698,358 + +0.6 698,369 + -0.8 698,466 - MMJJ_RS03740 0.20 +0.6 698,466 - MMJJ_RS03740 0.20 +1.2 698,470 - MMJJ_RS03740 0.20 +1.9 698,470 - MMJJ_RS03740 0.20 +2.8 698,477 + MMJJ_RS03740 0.21 -1.0 698,550 + MMJJ_RS03740 0.30 +5.7 698,583 - MMJJ_RS03740 0.33 -1.4 698,583 - MMJJ_RS03740 0.33 -0.1 698,583 - MMJJ_RS03740 0.33 -0.8 698,583 - MMJJ_RS03740 0.33 +0.3 698,583 - MMJJ_RS03740 0.33 +2.8 698,583 - MMJJ_RS03740 0.33 -0.2 698,583 - MMJJ_RS03740 0.33 +2.4 698,583 - MMJJ_RS03740 0.33 +2.8 698,584 + MMJJ_RS03740 0.34 +0.6 698,584 + MMJJ_RS03740 0.34 -2.2 698,584 + MMJJ_RS03740 0.34 -1.6 698,584 + MMJJ_RS03740 0.34 +1.0 698,644 - MMJJ_RS03740 0.41 -0.2 698,645 + MMJJ_RS03740 0.41 +2.5 698,645 + MMJJ_RS03740 0.41 -0.0 698,655 + MMJJ_RS03740 0.42 -0.5 698,662 - MMJJ_RS03740 0.43 -3.3 698,663 + MMJJ_RS03740 0.43 -2.4 698,663 + MMJJ_RS03740 0.43 +0.4 698,663 + MMJJ_RS03740 0.43 -0.6 698,663 + MMJJ_RS03740 0.43 +0.9 698,665 + MMJJ_RS03740 0.43 -3.2 698,780 + MMJJ_RS03740 0.56 +1.5 698,839 - MMJJ_RS03740 0.63 -1.0 698,844 + MMJJ_RS03740 0.64 +1.8 698,872 - MMJJ_RS03740 0.67 +0.4 698,875 - MMJJ_RS03740 0.67 +1.5 698,879 - MMJJ_RS03740 0.68 -0.9 698,879 - MMJJ_RS03740 0.68 +1.6 698,879 - MMJJ_RS03740 0.68 -3.2 698,912 + MMJJ_RS03740 0.72 -1.0 698,928 - MMJJ_RS03740 0.74 -2.8 698,965 - MMJJ_RS03740 0.78 -2.5 698,965 - MMJJ_RS03740 0.78 -0.0 698,966 + MMJJ_RS03740 0.78 +1.1 698,966 + MMJJ_RS03740 0.78 +0.1 698,969 - MMJJ_RS03740 0.78 +0.7 699,030 - MMJJ_RS03740 0.85 +1.0 699,072 - +4.5 699,073 + -2.4 699,073 + +1.5 699,157 + +0.8 699,167 - -1.2 699,167 - -0.2 699,167 - -2.2 699,168 + -2.3 699,168 + +2.2 699,168 + -0.0 699,171 - -0.7 699,179 - +2.1 699,240 + -2.8 699,267 - -0.9 699,271 - +0.4 699,271 - +1.4 699,271 - +0.8 699,271 - -2.6 699,271 - -1.4 699,272 + -0.7 699,272 + +2.9 699,272 + +1.9 699,272 + +2.4
Or see this region's nucleotide sequence