Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03700 and MMJJ_RS03705 are separated by 8 nucleotides MMJJ_RS03705 and MMJJ_RS03710 are separated by 20 nucleotides MMJJ_RS03710 and MMJJ_RS03715 are separated by 54 nucleotides MMJJ_RS03715 and MMJJ_RS03720 are separated by 123 nucleotides
MMJJ_RS03700: MMJJ_RS03700 - hypothetical protein, at 693,021 to 693,476
_RS03700
MMJJ_RS03705: MMJJ_RS03705 - methanogenesis marker 5 protein, at 693,485 to 693,925
_RS03705
MMJJ_RS03710: MMJJ_RS03710 - DUF2111 domain-containing protein, at 693,946 to 694,329
_RS03710
MMJJ_RS03715: MMJJ_RS03715 - hypothetical protein, at 694,384 to 694,968
_RS03715
MMJJ_RS03720: MMJJ_RS03720 - DsrE family protein, at 695,092 to 695,436
_RS03720
Position (kb) 693
694
695 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 692.955 kb on + strand at 692.955 kb on + strand at 692.956 kb on - strand at 692.957 kb on + strand at 692.959 kb on + strand at 692.960 kb on - strand at 692.961 kb on + strand at 692.961 kb on + strand at 692.996 kb on + strand at 693.016 kb on - strand at 693.016 kb on - strand at 693.018 kb on - strand at 693.018 kb on - strand at 693.018 kb on - strand at 693.018 kb on - strand at 693.036 kb on - strand at 693.036 kb on - strand at 693.039 kb on - strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.045 kb on - strand at 693.045 kb on - strand at 693.046 kb on + strand at 693.046 kb on + strand at 693.046 kb on + strand at 693.079 kb on + strand, within MMJJ_RS03700 at 693.129 kb on - strand, within MMJJ_RS03700 at 693.177 kb on + strand, within MMJJ_RS03700 at 693.178 kb on - strand, within MMJJ_RS03700 at 693.178 kb on - strand, within MMJJ_RS03700 at 693.179 kb on + strand, within MMJJ_RS03700 at 693.179 kb on + strand, within MMJJ_RS03700 at 693.182 kb on - strand, within MMJJ_RS03700 at 693.182 kb on - strand, within MMJJ_RS03700 at 693.183 kb on + strand, within MMJJ_RS03700 at 693.183 kb on + strand, within MMJJ_RS03700 at 693.183 kb on + strand, within MMJJ_RS03700 at 693.227 kb on - strand, within MMJJ_RS03700 at 693.227 kb on - strand, within MMJJ_RS03700 at 693.228 kb on + strand, within MMJJ_RS03700 at 693.285 kb on - strand, within MMJJ_RS03700 at 693.409 kb on + strand, within MMJJ_RS03700 at 693.458 kb on - strand at 693.782 kb on - strand, within MMJJ_RS03705 at 693.784 kb on - strand at 693.928 kb on - strand at 693.947 kb on - strand at 693.948 kb on + strand at 693.948 kb on + strand at 693.948 kb on + strand at 694.034 kb on + strand, within MMJJ_RS03710 at 694.040 kb on + strand, within MMJJ_RS03710 at 694.040 kb on + strand, within MMJJ_RS03710 at 694.044 kb on - strand, within MMJJ_RS03710 at 694.044 kb on - strand, within MMJJ_RS03710 at 694.044 kb on - strand, within MMJJ_RS03710 at 694.044 kb on - strand, within MMJJ_RS03710 at 694.048 kb on - strand, within MMJJ_RS03710 at 694.049 kb on + strand, within MMJJ_RS03710 at 694.049 kb on + strand, within MMJJ_RS03710 at 694.078 kb on - strand, within MMJJ_RS03710 at 694.079 kb on + strand, within MMJJ_RS03710 at 694.122 kb on - strand, within MMJJ_RS03710 at 694.165 kb on - strand, within MMJJ_RS03710 at 694.173 kb on + strand, within MMJJ_RS03710 at 694.195 kb on - strand, within MMJJ_RS03710 at 694.216 kb on + strand, within MMJJ_RS03710 at 694.267 kb on - strand, within MMJJ_RS03710 at 694.268 kb on + strand, within MMJJ_RS03710 at 694.273 kb on - strand, within MMJJ_RS03710 at 694.274 kb on + strand, within MMJJ_RS03710 at 694.274 kb on + strand, within MMJJ_RS03710 at 694.275 kb on - strand, within MMJJ_RS03710 at 694.294 kb on - strand at 694.295 kb on + strand at 694.302 kb on - strand at 694.303 kb on + strand at 694.342 kb on - strand at 694.342 kb on - strand at 694.346 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.354 kb on - strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.355 kb on + strand at 694.358 kb on - strand at 694.358 kb on - strand at 694.359 kb on + strand at 694.368 kb on - strand at 694.369 kb on + strand at 694.369 kb on + strand at 694.375 kb on + strand at 694.407 kb on - strand at 694.408 kb on + strand at 694.559 kb on - strand, within MMJJ_RS03715 at 694.559 kb on - strand, within MMJJ_RS03715 at 694.567 kb on + strand, within MMJJ_RS03715 at 694.610 kb on - strand, within MMJJ_RS03715 at 694.621 kb on - strand, within MMJJ_RS03715 at 694.622 kb on + strand, within MMJJ_RS03715 at 694.663 kb on - strand, within MMJJ_RS03715 at 694.679 kb on + strand, within MMJJ_RS03715 at 694.743 kb on + strand, within MMJJ_RS03715 at 694.784 kb on + strand, within MMJJ_RS03715 at 694.798 kb on + strand, within MMJJ_RS03715 at 694.816 kb on - strand, within MMJJ_RS03715 at 694.817 kb on + strand at 694.839 kb on - strand, within MMJJ_RS03715 at 694.850 kb on - strand, within MMJJ_RS03715 at 694.850 kb on - strand, within MMJJ_RS03715 at 694.850 kb on - strand, within MMJJ_RS03715 at 694.851 kb on + strand, within MMJJ_RS03715 at 694.851 kb on + strand at 694.851 kb on + strand, within MMJJ_RS03715 at 694.860 kb on - strand, within MMJJ_RS03715 at 694.870 kb on - strand, within MMJJ_RS03715 at 694.875 kb on - strand, within MMJJ_RS03715 at 694.875 kb on - strand, within MMJJ_RS03715 at 694.876 kb on + strand, within MMJJ_RS03715 at 694.886 kb on - strand, within MMJJ_RS03715 at 694.887 kb on + strand, within MMJJ_RS03715 at 694.890 kb on - strand, within MMJJ_RS03715 at 694.891 kb on + strand, within MMJJ_RS03715 at 694.940 kb on + strand at 694.963 kb on + strand at 694.968 kb on - strand at 694.969 kb on + strand at 694.969 kb on + strand at 694.984 kb on - strand at 694.985 kb on + strand at 694.990 kb on + strand at 694.994 kb on - strand at 695.013 kb on - strand at 695.027 kb on - strand at 695.033 kb on - strand at 695.033 kb on - strand at 695.033 kb on - strand at 695.059 kb on - strand at 695.060 kb on + strand at 695.101 kb on + strand at 695.122 kb on - strand at 695.123 kb on + strand at 695.131 kb on - strand, within MMJJ_RS03720 at 695.132 kb on + strand, within MMJJ_RS03720 at 695.134 kb on - strand, within MMJJ_RS03720 at 695.135 kb on + strand, within MMJJ_RS03720 at 695.221 kb on - strand, within MMJJ_RS03720 at 695.222 kb on + strand, within MMJJ_RS03720 at 695.264 kb on - strand, within MMJJ_RS03720 at 695.265 kb on + strand, within MMJJ_RS03720 at 695.306 kb on - strand, within MMJJ_RS03720 at 695.307 kb on + strand, within MMJJ_RS03720 at 695.307 kb on + strand, within MMJJ_RS03720 at 695.329 kb on - strand, within MMJJ_RS03720
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 692,955 + -0.1 692,955 + -2.5 692,956 - +2.9 692,957 + -2.8 692,959 + +1.3 692,960 - -2.6 692,961 + -2.8 692,961 + -1.2 692,996 + -1.8 693,016 - +0.7 693,016 - +1.2 693,018 - +1.4 693,018 - +0.1 693,018 - +2.0 693,018 - -1.3 693,036 - -0.6 693,036 - +0.1 693,039 - +1.6 693,040 + +3.7 693,040 + -2.2 693,045 - +1.9 693,045 - +0.2 693,046 + -1.6 693,046 + -1.2 693,046 + +2.2 693,079 + MMJJ_RS03700 0.13 +2.1 693,129 - MMJJ_RS03700 0.24 -1.4 693,177 + MMJJ_RS03700 0.34 +1.0 693,178 - MMJJ_RS03700 0.34 -0.1 693,178 - MMJJ_RS03700 0.34 +0.3 693,179 + MMJJ_RS03700 0.35 +0.1 693,179 + MMJJ_RS03700 0.35 -0.9 693,182 - MMJJ_RS03700 0.35 +2.8 693,182 - MMJJ_RS03700 0.35 +0.9 693,183 + MMJJ_RS03700 0.36 -0.2 693,183 + MMJJ_RS03700 0.36 -0.6 693,183 + MMJJ_RS03700 0.36 -1.6 693,227 - MMJJ_RS03700 0.45 +0.6 693,227 - MMJJ_RS03700 0.45 +0.5 693,228 + MMJJ_RS03700 0.45 -1.9 693,285 - MMJJ_RS03700 0.58 -3.3 693,409 + MMJJ_RS03700 0.85 -0.9 693,458 - -1.1 693,782 - MMJJ_RS03705 0.67 +1.4 693,784 - +0.4 693,928 - -1.2 693,947 - +0.6 693,948 + -1.6 693,948 + -0.8 693,948 + -1.9 694,034 + MMJJ_RS03710 0.23 -0.9 694,040 + MMJJ_RS03710 0.24 -1.6 694,040 + MMJJ_RS03710 0.24 -0.6 694,044 - MMJJ_RS03710 0.26 -2.3 694,044 - MMJJ_RS03710 0.26 -0.2 694,044 - MMJJ_RS03710 0.26 +3.1 694,044 - MMJJ_RS03710 0.26 +5.3 694,048 - MMJJ_RS03710 0.27 -1.3 694,049 + MMJJ_RS03710 0.27 -1.5 694,049 + MMJJ_RS03710 0.27 +2.5 694,078 - MMJJ_RS03710 0.34 -1.2 694,079 + MMJJ_RS03710 0.35 -0.9 694,122 - MMJJ_RS03710 0.46 +0.9 694,165 - MMJJ_RS03710 0.57 -1.8 694,173 + MMJJ_RS03710 0.59 -1.2 694,195 - MMJJ_RS03710 0.65 -1.2 694,216 + MMJJ_RS03710 0.70 -1.7 694,267 - MMJJ_RS03710 0.84 -1.3 694,268 + MMJJ_RS03710 0.84 +1.4 694,273 - MMJJ_RS03710 0.85 -0.3 694,274 + MMJJ_RS03710 0.85 -1.2 694,274 + MMJJ_RS03710 0.85 -0.6 694,275 - MMJJ_RS03710 0.86 -2.6 694,294 - +1.9 694,295 + +0.1 694,302 - +3.1 694,303 + +0.4 694,342 - +2.0 694,342 - +0.1 694,346 - +1.6 694,354 - -1.4 694,354 - +2.0 694,354 - -0.2 694,354 - -4.0 694,354 - -1.7 694,354 - -0.4 694,354 - -2.6 694,354 - -1.3 694,354 - +3.2 694,354 - +2.2 694,354 - +1.9 694,354 - +2.9 694,354 - +0.1 694,354 - +1.5 694,354 - -1.9 694,355 + -0.5 694,355 + -1.0 694,355 + +1.1 694,355 + -0.3 694,355 + -1.2 694,355 + -1.5 694,355 + -1.2 694,355 + -1.6 694,355 + -0.6 694,355 + -2.7 694,355 + -0.2 694,355 + +0.0 694,355 + -0.6 694,358 - -0.7 694,358 - -0.6 694,359 + +0.7 694,368 - -1.0 694,369 + +1.1 694,369 + -1.2 694,375 + +1.2 694,407 - +1.5 694,408 + +1.2 694,559 - MMJJ_RS03715 0.30 -1.8 694,559 - MMJJ_RS03715 0.30 +1.7 694,567 + MMJJ_RS03715 0.31 -1.8 694,610 - MMJJ_RS03715 0.39 -1.2 694,621 - MMJJ_RS03715 0.41 -0.9 694,622 + MMJJ_RS03715 0.41 -0.5 694,663 - MMJJ_RS03715 0.48 +2.8 694,679 + MMJJ_RS03715 0.50 -0.5 694,743 + MMJJ_RS03715 0.61 +1.3 694,784 + MMJJ_RS03715 0.68 +1.6 694,798 + MMJJ_RS03715 0.71 -2.7 694,816 - MMJJ_RS03715 0.74 -1.3 694,817 + +1.4 694,839 - MMJJ_RS03715 0.78 +1.6 694,850 - MMJJ_RS03715 0.80 -0.8 694,850 - MMJJ_RS03715 0.80 -0.2 694,850 - MMJJ_RS03715 0.80 +0.8 694,851 + MMJJ_RS03715 0.80 +0.1 694,851 + +1.4 694,851 + MMJJ_RS03715 0.80 +0.6 694,860 - MMJJ_RS03715 0.81 +1.2 694,870 - MMJJ_RS03715 0.83 -1.3 694,875 - MMJJ_RS03715 0.84 -2.4 694,875 - MMJJ_RS03715 0.84 +1.6 694,876 + MMJJ_RS03715 0.84 +1.2 694,886 - MMJJ_RS03715 0.86 -0.9 694,887 + MMJJ_RS03715 0.86 +0.8 694,890 - MMJJ_RS03715 0.86 +1.4 694,891 + MMJJ_RS03715 0.87 +1.4 694,940 + -2.4 694,963 + +3.0 694,968 - +0.6 694,969 + +2.9 694,969 + -1.6 694,984 - -3.3 694,985 + -1.4 694,990 + +0.9 694,994 - +0.7 695,013 - +0.6 695,027 - +0.6 695,033 - +1.4 695,033 - -1.7 695,033 - -0.2 695,059 - -1.5 695,060 + +3.0 695,101 + -1.8 695,122 - -1.7 695,123 + +2.2 695,131 - MMJJ_RS03720 0.11 +0.4 695,132 + MMJJ_RS03720 0.12 -1.9 695,134 - MMJJ_RS03720 0.12 -1.7 695,135 + MMJJ_RS03720 0.12 -1.2 695,221 - MMJJ_RS03720 0.37 +1.8 695,222 + MMJJ_RS03720 0.38 -1.3 695,264 - MMJJ_RS03720 0.50 +2.7 695,265 + MMJJ_RS03720 0.50 -1.4 695,306 - MMJJ_RS03720 0.62 -1.9 695,307 + MMJJ_RS03720 0.62 +1.5 695,307 + MMJJ_RS03720 0.62 +4.2 695,329 - MMJJ_RS03720 0.69 +1.1
Or see this region's nucleotide sequence