Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03685 and MMJJ_RS03690 overlap by 4 nucleotides MMJJ_RS03690 and MMJJ_RS03695 overlap by 8 nucleotides
MMJJ_RS03685: MMJJ_RS03685 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 689,060 to 690,898
_RS03685
MMJJ_RS03690: MMJJ_RS03690 - indolepyruvate oxidoreductase subunit beta, at 690,895 to 691,494
_RS03690
MMJJ_RS03695: MMJJ_RS03695 - phenylacetate--CoA ligase, at 691,487 to 692,731
_RS03695
Position (kb) 690
691
692 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 689.914 kb on + strand, within MMJJ_RS03685 at 689.938 kb on + strand, within MMJJ_RS03685 at 689.949 kb on - strand, within MMJJ_RS03685 at 690.036 kb on - strand, within MMJJ_RS03685 at 690.037 kb on + strand, within MMJJ_RS03685 at 690.066 kb on - strand, within MMJJ_RS03685 at 690.078 kb on - strand, within MMJJ_RS03685 at 690.119 kb on + strand, within MMJJ_RS03685 at 690.129 kb on - strand, within MMJJ_RS03685 at 690.191 kb on - strand, within MMJJ_RS03685 at 690.256 kb on - strand, within MMJJ_RS03685 at 690.266 kb on - strand, within MMJJ_RS03685 at 690.267 kb on + strand, within MMJJ_RS03685 at 690.292 kb on + strand, within MMJJ_RS03685 at 690.292 kb on + strand, within MMJJ_RS03685 at 690.304 kb on - strand, within MMJJ_RS03685 at 690.305 kb on + strand, within MMJJ_RS03685 at 690.331 kb on - strand, within MMJJ_RS03685 at 690.332 kb on + strand, within MMJJ_RS03685 at 690.385 kb on - strand, within MMJJ_RS03685 at 690.385 kb on - strand, within MMJJ_RS03685 at 690.426 kb on - strand, within MMJJ_RS03685 at 690.426 kb on - strand, within MMJJ_RS03685 at 690.427 kb on + strand, within MMJJ_RS03685 at 690.430 kb on - strand, within MMJJ_RS03685 at 690.431 kb on + strand, within MMJJ_RS03685 at 690.441 kb on + strand, within MMJJ_RS03685 at 690.457 kb on - strand, within MMJJ_RS03685 at 690.457 kb on - strand, within MMJJ_RS03685 at 690.544 kb on - strand, within MMJJ_RS03685 at 690.545 kb on + strand, within MMJJ_RS03685 at 690.545 kb on + strand, within MMJJ_RS03685 at 690.631 kb on - strand, within MMJJ_RS03685 at 690.631 kb on - strand, within MMJJ_RS03685 at 690.631 kb on - strand, within MMJJ_RS03685 at 690.653 kb on + strand, within MMJJ_RS03685 at 690.653 kb on + strand, within MMJJ_RS03685 at 690.659 kb on - strand, within MMJJ_RS03685 at 690.661 kb on - strand, within MMJJ_RS03685 at 690.749 kb on + strand at 690.749 kb on + strand at 690.751 kb on + strand at 690.796 kb on - strand at 690.796 kb on - strand at 690.796 kb on - strand at 690.796 kb on - strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.797 kb on + strand at 690.876 kb on - strand at 690.908 kb on - strand at 690.912 kb on + strand at 690.912 kb on + strand at 690.996 kb on - strand, within MMJJ_RS03690 at 691.040 kb on - strand, within MMJJ_RS03690 at 691.107 kb on + strand, within MMJJ_RS03690 at 691.110 kb on + strand, within MMJJ_RS03690 at 691.222 kb on - strand, within MMJJ_RS03690 at 691.223 kb on + strand, within MMJJ_RS03690 at 691.254 kb on - strand, within MMJJ_RS03690 at 691.255 kb on + strand, within MMJJ_RS03690 at 691.258 kb on - strand, within MMJJ_RS03690 at 691.258 kb on - strand, within MMJJ_RS03690 at 691.258 kb on - strand, within MMJJ_RS03690 at 691.259 kb on + strand, within MMJJ_RS03690 at 691.259 kb on + strand, within MMJJ_RS03690 at 691.354 kb on - strand, within MMJJ_RS03690 at 691.379 kb on + strand, within MMJJ_RS03690 at 691.379 kb on + strand, within MMJJ_RS03690 at 691.432 kb on + strand, within MMJJ_RS03690 at 691.492 kb on - strand at 691.495 kb on - strand at 691.511 kb on - strand at 691.590 kb on - strand at 691.591 kb on + strand at 691.656 kb on - strand, within MMJJ_RS03695 at 691.713 kb on - strand, within MMJJ_RS03695 at 691.757 kb on - strand, within MMJJ_RS03695 at 691.758 kb on + strand, within MMJJ_RS03695 at 691.805 kb on - strand, within MMJJ_RS03695 at 691.806 kb on + strand, within MMJJ_RS03695 at 691.834 kb on - strand at 691.835 kb on + strand, within MMJJ_RS03695 at 691.839 kb on - strand, within MMJJ_RS03695 at 691.891 kb on + strand, within MMJJ_RS03695 at 691.993 kb on - strand, within MMJJ_RS03695 at 691.994 kb on + strand, within MMJJ_RS03695 at 691.994 kb on + strand, within MMJJ_RS03695 at 692.003 kb on - strand at 692.028 kb on - strand, within MMJJ_RS03695 at 692.067 kb on - strand, within MMJJ_RS03695 at 692.074 kb on + strand, within MMJJ_RS03695 at 692.074 kb on + strand, within MMJJ_RS03695 at 692.111 kb on + strand, within MMJJ_RS03695 at 692.144 kb on - strand, within MMJJ_RS03695 at 692.166 kb on - strand, within MMJJ_RS03695 at 692.167 kb on + strand, within MMJJ_RS03695 at 692.168 kb on - strand, within MMJJ_RS03695 at 692.169 kb on + strand, within MMJJ_RS03695 at 692.216 kb on - strand, within MMJJ_RS03695 at 692.232 kb on - strand, within MMJJ_RS03695 at 692.233 kb on + strand, within MMJJ_RS03695 at 692.235 kb on - strand, within MMJJ_RS03695 at 692.257 kb on - strand, within MMJJ_RS03695 at 692.298 kb on - strand, within MMJJ_RS03695 at 692.299 kb on + strand, within MMJJ_RS03695 at 692.299 kb on + strand, within MMJJ_RS03695 at 692.312 kb on + strand, within MMJJ_RS03695 at 692.333 kb on + strand, within MMJJ_RS03695 at 692.334 kb on - strand, within MMJJ_RS03695 at 692.334 kb on - strand, within MMJJ_RS03695 at 692.335 kb on + strand, within MMJJ_RS03695 at 692.340 kb on + strand, within MMJJ_RS03695 at 692.381 kb on + strand, within MMJJ_RS03695 at 692.381 kb on + strand, within MMJJ_RS03695 at 692.434 kb on - strand, within MMJJ_RS03695 at 692.446 kb on + strand, within MMJJ_RS03695 at 692.455 kb on + strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.458 kb on - strand, within MMJJ_RS03695 at 692.459 kb on + strand, within MMJJ_RS03695 at 692.459 kb on + strand, within MMJJ_RS03695 at 692.461 kb on + strand, within MMJJ_RS03695 at 692.461 kb on + strand, within MMJJ_RS03695 at 692.461 kb on + strand, within MMJJ_RS03695 at 692.463 kb on + strand, within MMJJ_RS03695 at 692.484 kb on - strand, within MMJJ_RS03695 at 692.484 kb on - strand, within MMJJ_RS03695 at 692.487 kb on - strand, within MMJJ_RS03695 at 692.488 kb on + strand, within MMJJ_RS03695 at 692.491 kb on - strand, within MMJJ_RS03695 at 692.492 kb on + strand, within MMJJ_RS03695 at 692.492 kb on + strand, within MMJJ_RS03695
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 689,914 + MMJJ_RS03685 0.46 -0.9 689,938 + MMJJ_RS03685 0.48 -0.3 689,949 - MMJJ_RS03685 0.48 -1.6 690,036 - MMJJ_RS03685 0.53 +0.6 690,037 + MMJJ_RS03685 0.53 -0.2 690,066 - MMJJ_RS03685 0.55 +2.7 690,078 - MMJJ_RS03685 0.55 +2.2 690,119 + MMJJ_RS03685 0.58 +0.9 690,129 - MMJJ_RS03685 0.58 -0.9 690,191 - MMJJ_RS03685 0.62 +0.3 690,256 - MMJJ_RS03685 0.65 +0.5 690,266 - MMJJ_RS03685 0.66 +0.4 690,267 + MMJJ_RS03685 0.66 +2.0 690,292 + MMJJ_RS03685 0.67 -1.4 690,292 + MMJJ_RS03685 0.67 -0.9 690,304 - MMJJ_RS03685 0.68 -2.2 690,305 + MMJJ_RS03685 0.68 +1.6 690,331 - MMJJ_RS03685 0.69 -1.4 690,332 + MMJJ_RS03685 0.69 +0.2 690,385 - MMJJ_RS03685 0.72 +0.2 690,385 - MMJJ_RS03685 0.72 -2.1 690,426 - MMJJ_RS03685 0.74 -2.4 690,426 - MMJJ_RS03685 0.74 +0.1 690,427 + MMJJ_RS03685 0.74 +1.2 690,430 - MMJJ_RS03685 0.74 +1.7 690,431 + MMJJ_RS03685 0.75 -0.1 690,441 + MMJJ_RS03685 0.75 +1.6 690,457 - MMJJ_RS03685 0.76 +1.9 690,457 - MMJJ_RS03685 0.76 -0.5 690,544 - MMJJ_RS03685 0.81 -1.6 690,545 + MMJJ_RS03685 0.81 -2.3 690,545 + MMJJ_RS03685 0.81 +2.0 690,631 - MMJJ_RS03685 0.85 -1.2 690,631 - MMJJ_RS03685 0.85 +1.8 690,631 - MMJJ_RS03685 0.85 -0.9 690,653 + MMJJ_RS03685 0.87 -1.9 690,653 + MMJJ_RS03685 0.87 -3.0 690,659 - MMJJ_RS03685 0.87 -0.3 690,661 - MMJJ_RS03685 0.87 -0.1 690,749 + +0.9 690,749 + +2.6 690,751 + +0.6 690,796 - -1.8 690,796 - -0.3 690,796 - -0.0 690,796 - +0.4 690,797 + +1.4 690,797 + +1.9 690,797 + -0.6 690,797 + -2.4 690,797 + +1.4 690,797 + -0.2 690,876 - -1.9 690,908 - -0.1 690,912 + -1.2 690,912 + -3.8 690,996 - MMJJ_RS03690 0.17 +3.9 691,040 - MMJJ_RS03690 0.24 +3.5 691,107 + MMJJ_RS03690 0.35 -0.4 691,110 + MMJJ_RS03690 0.36 -0.2 691,222 - MMJJ_RS03690 0.55 +1.4 691,223 + MMJJ_RS03690 0.55 +2.0 691,254 - MMJJ_RS03690 0.60 -2.2 691,255 + MMJJ_RS03690 0.60 +1.3 691,258 - MMJJ_RS03690 0.60 +2.4 691,258 - MMJJ_RS03690 0.60 +1.9 691,258 - MMJJ_RS03690 0.60 -0.6 691,259 + MMJJ_RS03690 0.61 -1.3 691,259 + MMJJ_RS03690 0.61 -0.2 691,354 - MMJJ_RS03690 0.77 -2.5 691,379 + MMJJ_RS03690 0.81 -1.2 691,379 + MMJJ_RS03690 0.81 -0.8 691,432 + MMJJ_RS03690 0.90 +0.4 691,492 - -0.9 691,495 - -0.4 691,511 - -2.6 691,590 - -0.5 691,591 + +2.8 691,656 - MMJJ_RS03695 0.14 -1.5 691,713 - MMJJ_RS03695 0.18 -1.4 691,757 - MMJJ_RS03695 0.22 -0.8 691,758 + MMJJ_RS03695 0.22 -2.9 691,805 - MMJJ_RS03695 0.26 +0.4 691,806 + MMJJ_RS03695 0.26 -2.5 691,834 - +1.4 691,835 + MMJJ_RS03695 0.28 +2.6 691,839 - MMJJ_RS03695 0.28 -0.5 691,891 + MMJJ_RS03695 0.32 -1.4 691,993 - MMJJ_RS03695 0.41 +1.1 691,994 + MMJJ_RS03695 0.41 +2.8 691,994 + MMJJ_RS03695 0.41 -1.2 692,003 - +0.4 692,028 - MMJJ_RS03695 0.43 +2.2 692,067 - MMJJ_RS03695 0.47 +1.4 692,074 + MMJJ_RS03695 0.47 +3.5 692,074 + MMJJ_RS03695 0.47 -1.1 692,111 + MMJJ_RS03695 0.50 +2.0 692,144 - MMJJ_RS03695 0.53 +3.0 692,166 - MMJJ_RS03695 0.55 +0.9 692,167 + MMJJ_RS03695 0.55 -2.0 692,168 - MMJJ_RS03695 0.55 +1.4 692,169 + MMJJ_RS03695 0.55 +0.8 692,216 - MMJJ_RS03695 0.59 -1.9 692,232 - MMJJ_RS03695 0.60 -3.6 692,233 + MMJJ_RS03695 0.60 -0.5 692,235 - MMJJ_RS03695 0.60 +5.3 692,257 - MMJJ_RS03695 0.62 -0.4 692,298 - MMJJ_RS03695 0.65 -2.4 692,299 + MMJJ_RS03695 0.65 +2.0 692,299 + MMJJ_RS03695 0.65 +0.3 692,312 + MMJJ_RS03695 0.66 -2.2 692,333 + MMJJ_RS03695 0.68 -1.2 692,334 - MMJJ_RS03695 0.68 -1.3 692,334 - MMJJ_RS03695 0.68 -3.3 692,335 + MMJJ_RS03695 0.68 +1.6 692,340 + MMJJ_RS03695 0.69 -0.8 692,381 + MMJJ_RS03695 0.72 -1.2 692,381 + MMJJ_RS03695 0.72 -2.5 692,434 - MMJJ_RS03695 0.76 -1.0 692,446 + MMJJ_RS03695 0.77 +1.0 692,455 + MMJJ_RS03695 0.78 +1.5 692,458 - MMJJ_RS03695 0.78 +0.2 692,458 - MMJJ_RS03695 0.78 -1.9 692,458 - MMJJ_RS03695 0.78 -1.7 692,458 - MMJJ_RS03695 0.78 -1.9 692,458 - MMJJ_RS03695 0.78 -1.9 692,458 - MMJJ_RS03695 0.78 -0.6 692,459 + MMJJ_RS03695 0.78 +0.8 692,459 + MMJJ_RS03695 0.78 +2.1 692,461 + MMJJ_RS03695 0.78 -1.5 692,461 + MMJJ_RS03695 0.78 -0.7 692,461 + MMJJ_RS03695 0.78 -1.1 692,463 + MMJJ_RS03695 0.78 -1.9 692,484 - MMJJ_RS03695 0.80 +0.7 692,484 - MMJJ_RS03695 0.80 -0.1 692,487 - MMJJ_RS03695 0.80 +0.8 692,488 + MMJJ_RS03695 0.80 +0.0 692,491 - MMJJ_RS03695 0.81 -2.3 692,492 + MMJJ_RS03695 0.81 -1.7 692,492 + MMJJ_RS03695 0.81 +0.3
Or see this region's nucleotide sequence