Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03620 and MMJJ_RS03625 are separated by 13 nucleotides MMJJ_RS03625 and MMJJ_RS03630 are separated by 109 nucleotides MMJJ_RS03630 and MMJJ_RS03635 are separated by 135 nucleotides
MMJJ_RS03620: MMJJ_RS03620 - DUF2097 domain-containing protein, at 674,364 to 674,654
_RS03620
MMJJ_RS03625: MMJJ_RS03625 - DUF63 family protein, at 674,668 to 675,474
_RS03625
MMJJ_RS03630: MMJJ_RS03630 - AMP phosphorylase, at 675,584 to 677,101
_RS03630
MMJJ_RS03635: MMJJ_RS03635 - methionine--tRNA ligase, at 677,237 to 679,228
_RS03635
Position (kb) 675
676
677
678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 674.590 kb on - strand, within MMJJ_RS03620 at 674.590 kb on - strand, within MMJJ_RS03620 at 674.591 kb on + strand, within MMJJ_RS03620 at 674.638 kb on - strand at 674.639 kb on + strand at 674.655 kb on + strand at 674.669 kb on - strand at 674.688 kb on - strand at 674.689 kb on + strand at 674.689 kb on + strand at 674.689 kb on + strand at 674.692 kb on - strand at 674.735 kb on + strand at 674.741 kb on + strand at 674.743 kb on - strand at 674.744 kb on + strand at 674.745 kb on - strand at 674.745 kb on - strand at 674.746 kb on + strand at 674.746 kb on + strand at 674.782 kb on - strand, within MMJJ_RS03625 at 674.782 kb on - strand, within MMJJ_RS03625 at 674.782 kb on - strand, within MMJJ_RS03625 at 674.783 kb on + strand, within MMJJ_RS03625 at 674.783 kb on + strand, within MMJJ_RS03625 at 674.783 kb on + strand, within MMJJ_RS03625 at 674.821 kb on - strand, within MMJJ_RS03625 at 674.822 kb on + strand, within MMJJ_RS03625 at 674.825 kb on + strand, within MMJJ_RS03625 at 674.832 kb on + strand, within MMJJ_RS03625 at 674.888 kb on - strand, within MMJJ_RS03625 at 674.888 kb on - strand, within MMJJ_RS03625 at 674.890 kb on - strand, within MMJJ_RS03625 at 674.891 kb on + strand, within MMJJ_RS03625 at 674.923 kb on - strand, within MMJJ_RS03625 at 674.923 kb on - strand, within MMJJ_RS03625 at 674.939 kb on + strand, within MMJJ_RS03625 at 674.945 kb on - strand, within MMJJ_RS03625 at 674.946 kb on + strand, within MMJJ_RS03625 at 674.954 kb on + strand, within MMJJ_RS03625 at 674.994 kb on + strand, within MMJJ_RS03625 at 675.005 kb on - strand, within MMJJ_RS03625 at 675.006 kb on + strand, within MMJJ_RS03625 at 675.006 kb on + strand, within MMJJ_RS03625 at 675.008 kb on - strand, within MMJJ_RS03625 at 675.009 kb on + strand, within MMJJ_RS03625 at 675.013 kb on - strand, within MMJJ_RS03625 at 675.013 kb on - strand, within MMJJ_RS03625 at 675.014 kb on + strand, within MMJJ_RS03625 at 675.035 kb on - strand, within MMJJ_RS03625 at 675.036 kb on + strand, within MMJJ_RS03625 at 675.086 kb on - strand, within MMJJ_RS03625 at 675.087 kb on + strand, within MMJJ_RS03625 at 675.100 kb on - strand, within MMJJ_RS03625 at 675.100 kb on - strand, within MMJJ_RS03625 at 675.113 kb on + strand, within MMJJ_RS03625 at 675.121 kb on - strand, within MMJJ_RS03625 at 675.125 kb on - strand, within MMJJ_RS03625 at 675.126 kb on + strand, within MMJJ_RS03625 at 675.126 kb on + strand, within MMJJ_RS03625 at 675.129 kb on + strand, within MMJJ_RS03625 at 675.129 kb on + strand, within MMJJ_RS03625 at 675.156 kb on - strand, within MMJJ_RS03625 at 675.157 kb on + strand, within MMJJ_RS03625 at 675.160 kb on - strand, within MMJJ_RS03625 at 675.177 kb on + strand, within MMJJ_RS03625 at 675.177 kb on + strand, within MMJJ_RS03625 at 675.197 kb on + strand, within MMJJ_RS03625 at 675.216 kb on + strand, within MMJJ_RS03625 at 675.278 kb on - strand, within MMJJ_RS03625 at 675.278 kb on - strand, within MMJJ_RS03625 at 675.288 kb on - strand, within MMJJ_RS03625 at 675.289 kb on + strand, within MMJJ_RS03625 at 675.289 kb on + strand, within MMJJ_RS03625 at 675.394 kb on - strand at 675.400 kb on + strand at 675.429 kb on - strand at 675.429 kb on - strand at 675.429 kb on - strand at 675.429 kb on - strand at 675.429 kb on - strand at 675.429 kb on - strand at 675.429 kb on - strand at 675.429 kb on - strand at 675.430 kb on + strand at 675.430 kb on + strand at 675.431 kb on - strand at 675.431 kb on - strand at 675.431 kb on - strand at 675.431 kb on - strand at 675.431 kb on - strand at 675.432 kb on + strand at 675.490 kb on + strand at 675.496 kb on + strand at 675.504 kb on - strand at 675.536 kb on + strand at 675.539 kb on - strand at 675.546 kb on + strand at 675.552 kb on + strand at 675.555 kb on - strand at 675.561 kb on - strand at 675.562 kb on + strand at 675.565 kb on - strand at 675.565 kb on - strand at 675.565 kb on - strand at 675.565 kb on - strand at 675.565 kb on - strand at 675.565 kb on - strand at 675.565 kb on - strand at 675.566 kb on + strand at 675.566 kb on + strand at 675.566 kb on + strand at 675.566 kb on + strand at 675.566 kb on + strand at 675.566 kb on + strand at 675.566 kb on + strand at 675.568 kb on + strand at 675.568 kb on + strand at 675.596 kb on - strand at 675.597 kb on + strand at 675.597 kb on + strand at 675.633 kb on - strand at 675.634 kb on + strand at 675.653 kb on - strand at 675.688 kb on + strand at 675.694 kb on - strand at 675.694 kb on - strand at 675.695 kb on + strand at 675.695 kb on + strand at 675.696 kb on - strand at 675.696 kb on - strand at 675.716 kb on + strand at 675.743 kb on - strand, within MMJJ_RS03630 at 675.808 kb on - strand, within MMJJ_RS03630 at 675.809 kb on + strand, within MMJJ_RS03630 at 675.813 kb on + strand, within MMJJ_RS03630 at 675.814 kb on - strand, within MMJJ_RS03630 at 675.833 kb on - strand, within MMJJ_RS03630 at 675.950 kb on - strand, within MMJJ_RS03630 at 676.140 kb on - strand, within MMJJ_RS03630 at 676.141 kb on + strand, within MMJJ_RS03630 at 676.141 kb on + strand, within MMJJ_RS03630 at 676.146 kb on + strand, within MMJJ_RS03630 at 676.255 kb on - strand, within MMJJ_RS03630 at 676.269 kb on - strand, within MMJJ_RS03630 at 676.269 kb on - strand, within MMJJ_RS03630 at 676.478 kb on - strand, within MMJJ_RS03630 at 676.479 kb on + strand, within MMJJ_RS03630 at 676.479 kb on + strand, within MMJJ_RS03630 at 676.554 kb on + strand, within MMJJ_RS03630 at 676.576 kb on + strand, within MMJJ_RS03630 at 676.576 kb on + strand, within MMJJ_RS03630 at 676.600 kb on - strand, within MMJJ_RS03630 at 676.680 kb on + strand, within MMJJ_RS03630 at 676.680 kb on + strand, within MMJJ_RS03630 at 676.703 kb on + strand, within MMJJ_RS03630 at 676.707 kb on - strand, within MMJJ_RS03630 at 676.707 kb on - strand, within MMJJ_RS03630 at 676.708 kb on + strand, within MMJJ_RS03630 at 676.708 kb on + strand, within MMJJ_RS03630 at 676.711 kb on - strand, within MMJJ_RS03630 at 676.711 kb on - strand, within MMJJ_RS03630 at 676.711 kb on - strand, within MMJJ_RS03630 at 676.712 kb on + strand, within MMJJ_RS03630 at 676.781 kb on - strand, within MMJJ_RS03630 at 676.781 kb on - strand, within MMJJ_RS03630 at 676.796 kb on - strand, within MMJJ_RS03630 at 676.825 kb on - strand, within MMJJ_RS03630 at 676.859 kb on - strand, within MMJJ_RS03630 at 676.860 kb on + strand, within MMJJ_RS03630 at 676.907 kb on - strand, within MMJJ_RS03630 at 676.907 kb on - strand, within MMJJ_RS03630 at 676.908 kb on + strand, within MMJJ_RS03630 at 676.949 kb on + strand, within MMJJ_RS03630 at 676.953 kb on - strand at 676.953 kb on - strand at 676.954 kb on + strand at 676.972 kb on - strand at 676.988 kb on - strand at 677.013 kb on - strand at 677.013 kb on - strand at 677.014 kb on + strand at 677.076 kb on + strand at 677.097 kb on + strand at 677.097 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.132 kb on - strand at 677.133 kb on + strand at 677.140 kb on - strand at 677.155 kb on - strand at 677.155 kb on - strand at 677.156 kb on + strand at 677.156 kb on + strand at 677.158 kb on + strand at 677.161 kb on - strand at 677.162 kb on + strand at 677.167 kb on + strand at 677.236 kb on + strand at 677.288 kb on - strand at 677.293 kb on - strand at 677.541 kb on - strand, within MMJJ_RS03635 at 677.554 kb on - strand, within MMJJ_RS03635 at 677.555 kb on + strand, within MMJJ_RS03635 at 677.623 kb on - strand, within MMJJ_RS03635 at 677.682 kb on + strand, within MMJJ_RS03635 at 677.720 kb on - strand, within MMJJ_RS03635
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 674,590 - MMJJ_RS03620 0.78 -0.6 674,590 - MMJJ_RS03620 0.78 -1.3 674,591 + MMJJ_RS03620 0.78 +0.4 674,638 - -0.9 674,639 + -0.9 674,655 + -1.9 674,669 - +1.7 674,688 - +1.0 674,689 + -2.1 674,689 + -2.2 674,689 + +0.4 674,692 - +0.1 674,735 + -0.2 674,741 + +1.9 674,743 - -0.2 674,744 + -0.1 674,745 - -3.6 674,745 - +1.1 674,746 + -1.8 674,746 + +2.5 674,782 - MMJJ_RS03625 0.14 -1.8 674,782 - MMJJ_RS03625 0.14 +1.6 674,782 - MMJJ_RS03625 0.14 -0.6 674,783 + MMJJ_RS03625 0.14 -0.8 674,783 + MMJJ_RS03625 0.14 -0.1 674,783 + MMJJ_RS03625 0.14 -2.1 674,821 - MMJJ_RS03625 0.19 -0.6 674,822 + MMJJ_RS03625 0.19 +1.0 674,825 + MMJJ_RS03625 0.19 +0.1 674,832 + MMJJ_RS03625 0.20 -1.4 674,888 - MMJJ_RS03625 0.27 +1.0 674,888 - MMJJ_RS03625 0.27 +1.2 674,890 - MMJJ_RS03625 0.28 +1.2 674,891 + MMJJ_RS03625 0.28 -1.9 674,923 - MMJJ_RS03625 0.32 +1.0 674,923 - MMJJ_RS03625 0.32 -2.7 674,939 + MMJJ_RS03625 0.34 -1.9 674,945 - MMJJ_RS03625 0.34 -1.1 674,946 + MMJJ_RS03625 0.34 -0.9 674,954 + MMJJ_RS03625 0.35 +0.8 674,994 + MMJJ_RS03625 0.40 +5.3 675,005 - MMJJ_RS03625 0.42 +1.9 675,006 + MMJJ_RS03625 0.42 -1.1 675,006 + MMJJ_RS03625 0.42 -1.6 675,008 - MMJJ_RS03625 0.42 +1.5 675,009 + MMJJ_RS03625 0.42 +2.5 675,013 - MMJJ_RS03625 0.43 -2.2 675,013 - MMJJ_RS03625 0.43 +1.8 675,014 + MMJJ_RS03625 0.43 +0.1 675,035 - MMJJ_RS03625 0.45 +0.9 675,036 + MMJJ_RS03625 0.46 +0.1 675,086 - MMJJ_RS03625 0.52 +0.6 675,087 + MMJJ_RS03625 0.52 +1.3 675,100 - MMJJ_RS03625 0.54 +1.9 675,100 - MMJJ_RS03625 0.54 +1.9 675,113 + MMJJ_RS03625 0.55 -0.5 675,121 - MMJJ_RS03625 0.56 -0.5 675,125 - MMJJ_RS03625 0.57 +2.0 675,126 + MMJJ_RS03625 0.57 +3.0 675,126 + MMJJ_RS03625 0.57 -0.1 675,129 + MMJJ_RS03625 0.57 +1.1 675,129 + MMJJ_RS03625 0.57 -1.2 675,156 - MMJJ_RS03625 0.60 -1.7 675,157 + MMJJ_RS03625 0.61 -2.0 675,160 - MMJJ_RS03625 0.61 -2.5 675,177 + MMJJ_RS03625 0.63 +0.2 675,177 + MMJJ_RS03625 0.63 +3.4 675,197 + MMJJ_RS03625 0.66 +1.6 675,216 + MMJJ_RS03625 0.68 -1.2 675,278 - MMJJ_RS03625 0.76 +0.9 675,278 - MMJJ_RS03625 0.76 +0.1 675,288 - MMJJ_RS03625 0.77 +1.2 675,289 + MMJJ_RS03625 0.77 -1.3 675,289 + MMJJ_RS03625 0.77 +1.3 675,394 - -1.8 675,400 + -3.4 675,429 - -3.1 675,429 - +0.9 675,429 - +0.6 675,429 - +3.4 675,429 - -2.2 675,429 - +2.5 675,429 - -3.4 675,429 - +1.4 675,430 + +0.3 675,430 + -0.5 675,431 - +1.8 675,431 - +4.2 675,431 - +1.6 675,431 - +0.8 675,431 - -2.1 675,432 + -1.5 675,490 + -0.6 675,496 + -2.2 675,504 - -0.3 675,536 + -0.7 675,539 - +3.2 675,546 + +0.6 675,552 + +3.8 675,555 - +0.7 675,561 - -0.4 675,562 + -0.4 675,565 - -0.6 675,565 - +2.2 675,565 - +2.6 675,565 - +1.6 675,565 - +3.2 675,565 - +1.2 675,565 - -0.9 675,566 + -0.7 675,566 + -1.6 675,566 + +3.3 675,566 + +0.9 675,566 + -1.2 675,566 + +2.7 675,566 + +3.0 675,568 + +1.5 675,568 + -0.2 675,596 - +0.4 675,597 + -0.5 675,597 + -0.2 675,633 - +0.1 675,634 + -0.3 675,653 - -1.2 675,688 + +0.2 675,694 - +0.8 675,694 - -2.7 675,695 + +0.2 675,695 + -2.5 675,696 - +2.1 675,696 - -0.9 675,716 + +3.0 675,743 - MMJJ_RS03630 0.10 +2.4 675,808 - MMJJ_RS03630 0.15 +3.0 675,809 + MMJJ_RS03630 0.15 -1.0 675,813 + MMJJ_RS03630 0.15 -1.0 675,814 - MMJJ_RS03630 0.15 +0.4 675,833 - MMJJ_RS03630 0.16 +1.5 675,950 - MMJJ_RS03630 0.24 +3.0 676,140 - MMJJ_RS03630 0.37 +2.5 676,141 + MMJJ_RS03630 0.37 +0.2 676,141 + MMJJ_RS03630 0.37 +2.1 676,146 + MMJJ_RS03630 0.37 +2.0 676,255 - MMJJ_RS03630 0.44 -2.4 676,269 - MMJJ_RS03630 0.45 +0.6 676,269 - MMJJ_RS03630 0.45 +5.0 676,478 - MMJJ_RS03630 0.59 +3.1 676,479 + MMJJ_RS03630 0.59 +1.5 676,479 + MMJJ_RS03630 0.59 -2.0 676,554 + MMJJ_RS03630 0.64 -0.5 676,576 + MMJJ_RS03630 0.65 -0.4 676,576 + MMJJ_RS03630 0.65 -2.0 676,600 - MMJJ_RS03630 0.67 +1.3 676,680 + MMJJ_RS03630 0.72 +1.6 676,680 + MMJJ_RS03630 0.72 +1.7 676,703 + MMJJ_RS03630 0.74 -0.6 676,707 - MMJJ_RS03630 0.74 -3.4 676,707 - MMJJ_RS03630 0.74 -1.0 676,708 + MMJJ_RS03630 0.74 -0.2 676,708 + MMJJ_RS03630 0.74 -1.0 676,711 - MMJJ_RS03630 0.74 -0.9 676,711 - MMJJ_RS03630 0.74 -0.3 676,711 - MMJJ_RS03630 0.74 +3.8 676,712 + MMJJ_RS03630 0.74 -3.4 676,781 - MMJJ_RS03630 0.79 -1.5 676,781 - MMJJ_RS03630 0.79 +1.4 676,796 - MMJJ_RS03630 0.80 +0.6 676,825 - MMJJ_RS03630 0.82 -1.2 676,859 - MMJJ_RS03630 0.84 +6.1 676,860 + MMJJ_RS03630 0.84 -0.0 676,907 - MMJJ_RS03630 0.87 +2.7 676,907 - MMJJ_RS03630 0.87 +0.0 676,908 + MMJJ_RS03630 0.87 -0.9 676,949 + MMJJ_RS03630 0.90 +0.7 676,953 - -1.9 676,953 - +5.1 676,954 + +2.5 676,972 - -0.7 676,988 - -1.9 677,013 - -0.4 677,013 - +0.6 677,014 + +0.8 677,076 + +5.4 677,097 + -2.3 677,097 + -1.2 677,121 + +2.8 677,121 + +2.3 677,121 + -1.6 677,132 - -3.1 677,133 + +2.5 677,140 - -2.0 677,155 - +0.1 677,155 - -1.9 677,156 + +1.1 677,156 + +1.4 677,158 + -1.4 677,161 - +0.3 677,162 + +0.4 677,167 + +1.8 677,236 + +1.1 677,288 - -0.9 677,293 - -0.9 677,541 - MMJJ_RS03635 0.15 -2.2 677,554 - MMJJ_RS03635 0.16 +1.4 677,555 + MMJJ_RS03635 0.16 -0.9 677,623 - MMJJ_RS03635 0.19 +1.4 677,682 + MMJJ_RS03635 0.22 +0.4 677,720 - MMJJ_RS03635 0.24 -0.9
Or see this region's nucleotide sequence