Experiment: McCas_formate_complete Antimycin A 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03605 and MMJJ_RS03610 are separated by 436 nucleotides MMJJ_RS03610 and MMJJ_RS03615 are separated by 1 nucleotides MMJJ_RS03615 and MMJJ_RS03620 are separated by 14 nucleotides MMJJ_RS03620 and MMJJ_RS03625 are separated by 13 nucleotides
MMJJ_RS03605: MMJJ_RS03605 - TIGR00297 family protein, at 672,173 to 672,886
_RS03605
MMJJ_RS03610: MMJJ_RS03610 - HIT family protein, at 673,323 to 673,715
_RS03610
MMJJ_RS03615: MMJJ_RS03615 - cobalt-precorrin-8 methylmutase, at 673,717 to 674,349
_RS03615
MMJJ_RS03620: MMJJ_RS03620 - DUF2097 domain-containing protein, at 674,364 to 674,654
_RS03620
MMJJ_RS03625: MMJJ_RS03625 - DUF63 family protein, at 674,668 to 675,474
_RS03625
Position (kb) 673
674
675 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 672.743 kb on - strand, within MMJJ_RS03605 at 672.766 kb on - strand, within MMJJ_RS03605 at 672.766 kb on - strand, within MMJJ_RS03605 at 672.827 kb on - strand at 672.866 kb on - strand at 672.899 kb on + strand at 672.921 kb on + strand at 672.921 kb on + strand at 672.923 kb on - strand at 672.930 kb on - strand at 672.935 kb on - strand at 672.939 kb on - strand at 672.939 kb on - strand at 672.945 kb on + strand at 672.959 kb on - strand at 672.962 kb on - strand at 672.962 kb on - strand at 672.962 kb on - strand at 672.963 kb on + strand at 672.964 kb on - strand at 672.964 kb on - strand at 672.965 kb on + strand at 672.965 kb on + strand at 672.967 kb on - strand at 672.967 kb on - strand at 672.968 kb on + strand at 672.968 kb on + strand at 672.968 kb on + strand at 672.968 kb on + strand at 672.969 kb on - strand at 672.970 kb on + strand at 672.988 kb on - strand at 673.024 kb on - strand at 673.028 kb on - strand at 673.040 kb on + strand at 673.045 kb on - strand at 673.045 kb on - strand at 673.090 kb on + strand at 673.101 kb on - strand at 673.113 kb on - strand at 673.145 kb on + strand at 673.145 kb on + strand at 673.162 kb on - strand at 673.197 kb on - strand at 673.229 kb on - strand at 673.230 kb on + strand at 673.249 kb on + strand at 673.249 kb on + strand at 673.254 kb on - strand at 673.255 kb on + strand at 673.272 kb on - strand at 673.272 kb on - strand at 673.279 kb on - strand at 673.308 kb on - strand at 673.308 kb on - strand at 673.309 kb on + strand at 673.309 kb on + strand at 673.309 kb on + strand at 673.318 kb on - strand at 673.328 kb on - strand at 673.329 kb on + strand at 673.356 kb on + strand at 673.369 kb on - strand, within MMJJ_RS03610 at 673.370 kb on + strand, within MMJJ_RS03610 at 673.375 kb on + strand, within MMJJ_RS03610 at 673.400 kb on - strand, within MMJJ_RS03610 at 673.401 kb on + strand, within MMJJ_RS03610 at 673.401 kb on + strand, within MMJJ_RS03610 at 673.401 kb on + strand, within MMJJ_RS03610 at 673.401 kb on + strand, within MMJJ_RS03610 at 673.438 kb on - strand, within MMJJ_RS03610 at 673.439 kb on + strand, within MMJJ_RS03610 at 673.564 kb on - strand, within MMJJ_RS03610 at 673.568 kb on - strand, within MMJJ_RS03610 at 673.569 kb on + strand, within MMJJ_RS03610 at 673.714 kb on + strand at 673.918 kb on - strand, within MMJJ_RS03615 at 673.919 kb on + strand, within MMJJ_RS03615 at 673.919 kb on + strand, within MMJJ_RS03615 at 673.953 kb on - strand, within MMJJ_RS03615 at 673.957 kb on - strand, within MMJJ_RS03615 at 674.065 kb on - strand, within MMJJ_RS03615 at 674.130 kb on - strand, within MMJJ_RS03615 at 674.293 kb on - strand at 674.355 kb on - strand at 674.355 kb on - strand at 674.355 kb on - strand at 674.355 kb on - strand at 674.356 kb on + strand at 674.356 kb on + strand at 674.358 kb on - strand at 674.358 kb on - strand at 674.359 kb on + strand at 674.365 kb on - strand at 674.380 kb on + strand at 674.421 kb on - strand, within MMJJ_RS03620 at 674.556 kb on - strand, within MMJJ_RS03620 at 674.556 kb on - strand, within MMJJ_RS03620 at 674.556 kb on - strand, within MMJJ_RS03620 at 674.556 kb on - strand, within MMJJ_RS03620 at 674.557 kb on + strand, within MMJJ_RS03620 at 674.560 kb on - strand, within MMJJ_RS03620 at 674.560 kb on - strand, within MMJJ_RS03620 at 674.561 kb on + strand, within MMJJ_RS03620 at 674.561 kb on + strand, within MMJJ_RS03620 at 674.561 kb on + strand, within MMJJ_RS03620 at 674.574 kb on - strand, within MMJJ_RS03620 at 674.590 kb on - strand, within MMJJ_RS03620 at 674.590 kb on - strand, within MMJJ_RS03620 at 674.591 kb on + strand, within MMJJ_RS03620 at 674.638 kb on - strand at 674.639 kb on + strand at 674.655 kb on + strand at 674.669 kb on - strand at 674.688 kb on - strand at 674.689 kb on + strand at 674.689 kb on + strand at 674.689 kb on + strand at 674.692 kb on - strand at 674.735 kb on + strand at 674.741 kb on + strand at 674.743 kb on - strand at 674.744 kb on + strand at 674.745 kb on - strand at 674.745 kb on - strand at 674.746 kb on + strand at 674.746 kb on + strand at 674.782 kb on - strand, within MMJJ_RS03625 at 674.782 kb on - strand, within MMJJ_RS03625 at 674.782 kb on - strand, within MMJJ_RS03625 at 674.783 kb on + strand, within MMJJ_RS03625 at 674.783 kb on + strand, within MMJJ_RS03625 at 674.783 kb on + strand, within MMJJ_RS03625 at 674.821 kb on - strand, within MMJJ_RS03625 at 674.822 kb on + strand, within MMJJ_RS03625 at 674.825 kb on + strand, within MMJJ_RS03625 at 674.832 kb on + strand, within MMJJ_RS03625 at 674.888 kb on - strand, within MMJJ_RS03625 at 674.888 kb on - strand, within MMJJ_RS03625 at 674.890 kb on - strand, within MMJJ_RS03625 at 674.891 kb on + strand, within MMJJ_RS03625 at 674.923 kb on - strand, within MMJJ_RS03625 at 674.923 kb on - strand, within MMJJ_RS03625 at 674.939 kb on + strand, within MMJJ_RS03625 at 674.945 kb on - strand, within MMJJ_RS03625 at 674.946 kb on + strand, within MMJJ_RS03625 at 674.954 kb on + strand, within MMJJ_RS03625 at 674.994 kb on + strand, within MMJJ_RS03625 at 675.005 kb on - strand, within MMJJ_RS03625 at 675.006 kb on + strand, within MMJJ_RS03625 at 675.006 kb on + strand, within MMJJ_RS03625 at 675.008 kb on - strand, within MMJJ_RS03625 at 675.009 kb on + strand, within MMJJ_RS03625 at 675.013 kb on - strand, within MMJJ_RS03625 at 675.013 kb on - strand, within MMJJ_RS03625 at 675.014 kb on + strand, within MMJJ_RS03625 at 675.035 kb on - strand, within MMJJ_RS03625 at 675.036 kb on + strand, within MMJJ_RS03625 at 675.086 kb on - strand, within MMJJ_RS03625 at 675.087 kb on + strand, within MMJJ_RS03625 at 675.100 kb on - strand, within MMJJ_RS03625 at 675.100 kb on - strand, within MMJJ_RS03625 at 675.113 kb on + strand, within MMJJ_RS03625 at 675.121 kb on - strand, within MMJJ_RS03625 at 675.125 kb on - strand, within MMJJ_RS03625 at 675.126 kb on + strand, within MMJJ_RS03625 at 675.126 kb on + strand, within MMJJ_RS03625 at 675.129 kb on + strand, within MMJJ_RS03625 at 675.129 kb on + strand, within MMJJ_RS03625 at 675.156 kb on - strand, within MMJJ_RS03625 at 675.157 kb on + strand, within MMJJ_RS03625 at 675.160 kb on - strand, within MMJJ_RS03625 at 675.177 kb on + strand, within MMJJ_RS03625 at 675.177 kb on + strand, within MMJJ_RS03625 at 675.197 kb on + strand, within MMJJ_RS03625 at 675.216 kb on + strand, within MMJJ_RS03625 at 675.278 kb on - strand, within MMJJ_RS03625 at 675.278 kb on - strand, within MMJJ_RS03625 at 675.288 kb on - strand, within MMJJ_RS03625 at 675.289 kb on + strand, within MMJJ_RS03625 at 675.289 kb on + strand, within MMJJ_RS03625
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM remove 672,743 - MMJJ_RS03605 0.80 +4.3 672,766 - MMJJ_RS03605 0.83 -1.8 672,766 - MMJJ_RS03605 0.83 -1.5 672,827 - +4.0 672,866 - -1.2 672,899 + -0.6 672,921 + +5.0 672,921 + -2.7 672,923 - -0.1 672,930 - +2.3 672,935 - +3.1 672,939 - +3.3 672,939 - -0.9 672,945 + -4.5 672,959 - +2.5 672,962 - -0.2 672,962 - -2.0 672,962 - -0.5 672,963 + +1.3 672,964 - -2.2 672,964 - +0.5 672,965 + +3.7 672,965 + +1.1 672,967 - -2.2 672,967 - +0.4 672,968 + +2.7 672,968 + +1.6 672,968 + +1.4 672,968 + +1.5 672,969 - +2.3 672,970 + +1.4 672,988 - +1.7 673,024 - +4.8 673,028 - -1.7 673,040 + +1.0 673,045 - +1.4 673,045 - -2.0 673,090 + +1.6 673,101 - +0.5 673,113 - -0.8 673,145 + +4.9 673,145 + -3.3 673,162 - +1.5 673,197 - -2.7 673,229 - -0.7 673,230 + +1.1 673,249 + -1.6 673,249 + -0.8 673,254 - +1.4 673,255 + -0.6 673,272 - +1.0 673,272 - -2.8 673,279 - -1.6 673,308 - -0.4 673,308 - +3.3 673,309 + -1.9 673,309 + +0.1 673,309 + +3.1 673,318 - +2.4 673,328 - +0.1 673,329 + -1.2 673,356 + +1.6 673,369 - MMJJ_RS03610 0.12 -1.2 673,370 + MMJJ_RS03610 0.12 -0.5 673,375 + MMJJ_RS03610 0.13 -0.5 673,400 - MMJJ_RS03610 0.20 +1.2 673,401 + MMJJ_RS03610 0.20 +1.8 673,401 + MMJJ_RS03610 0.20 +1.2 673,401 + MMJJ_RS03610 0.20 -0.6 673,401 + MMJJ_RS03610 0.20 +2.7 673,438 - MMJJ_RS03610 0.29 -1.7 673,439 + MMJJ_RS03610 0.30 -2.1 673,564 - MMJJ_RS03610 0.61 -1.2 673,568 - MMJJ_RS03610 0.62 -0.0 673,569 + MMJJ_RS03610 0.63 -1.3 673,714 + -3.7 673,918 - MMJJ_RS03615 0.32 +0.4 673,919 + MMJJ_RS03615 0.32 +0.1 673,919 + MMJJ_RS03615 0.32 +1.4 673,953 - MMJJ_RS03615 0.37 +1.4 673,957 - MMJJ_RS03615 0.38 -2.0 674,065 - MMJJ_RS03615 0.55 -0.2 674,130 - MMJJ_RS03615 0.65 +0.2 674,293 - -1.0 674,355 - -0.7 674,355 - +0.4 674,355 - -0.3 674,355 - +1.4 674,356 + -0.2 674,356 + -0.2 674,358 - -0.6 674,358 - +1.9 674,359 + -0.3 674,365 - +0.5 674,380 + +1.4 674,421 - MMJJ_RS03620 0.20 -0.6 674,556 - MMJJ_RS03620 0.66 +0.4 674,556 - MMJJ_RS03620 0.66 +1.4 674,556 - MMJJ_RS03620 0.66 -1.4 674,556 - MMJJ_RS03620 0.66 -0.9 674,557 + MMJJ_RS03620 0.66 +0.7 674,560 - MMJJ_RS03620 0.67 -0.6 674,560 - MMJJ_RS03620 0.67 -0.2 674,561 + MMJJ_RS03620 0.68 -0.9 674,561 + MMJJ_RS03620 0.68 +0.4 674,561 + MMJJ_RS03620 0.68 +1.4 674,574 - MMJJ_RS03620 0.72 -0.9 674,590 - MMJJ_RS03620 0.78 -0.6 674,590 - MMJJ_RS03620 0.78 -1.3 674,591 + MMJJ_RS03620 0.78 +0.4 674,638 - -0.9 674,639 + -0.9 674,655 + -1.9 674,669 - +1.7 674,688 - +1.0 674,689 + -2.1 674,689 + -2.2 674,689 + +0.4 674,692 - +0.1 674,735 + -0.2 674,741 + +1.9 674,743 - -0.2 674,744 + -0.1 674,745 - -3.6 674,745 - +1.1 674,746 + -1.8 674,746 + +2.5 674,782 - MMJJ_RS03625 0.14 -1.8 674,782 - MMJJ_RS03625 0.14 +1.6 674,782 - MMJJ_RS03625 0.14 -0.6 674,783 + MMJJ_RS03625 0.14 -0.8 674,783 + MMJJ_RS03625 0.14 -0.1 674,783 + MMJJ_RS03625 0.14 -2.1 674,821 - MMJJ_RS03625 0.19 -0.6 674,822 + MMJJ_RS03625 0.19 +1.0 674,825 + MMJJ_RS03625 0.19 +0.1 674,832 + MMJJ_RS03625 0.20 -1.4 674,888 - MMJJ_RS03625 0.27 +1.0 674,888 - MMJJ_RS03625 0.27 +1.2 674,890 - MMJJ_RS03625 0.28 +1.2 674,891 + MMJJ_RS03625 0.28 -1.9 674,923 - MMJJ_RS03625 0.32 +1.0 674,923 - MMJJ_RS03625 0.32 -2.7 674,939 + MMJJ_RS03625 0.34 -1.9 674,945 - MMJJ_RS03625 0.34 -1.1 674,946 + MMJJ_RS03625 0.34 -0.9 674,954 + MMJJ_RS03625 0.35 +0.8 674,994 + MMJJ_RS03625 0.40 +5.3 675,005 - MMJJ_RS03625 0.42 +1.9 675,006 + MMJJ_RS03625 0.42 -1.1 675,006 + MMJJ_RS03625 0.42 -1.6 675,008 - MMJJ_RS03625 0.42 +1.5 675,009 + MMJJ_RS03625 0.42 +2.5 675,013 - MMJJ_RS03625 0.43 -2.2 675,013 - MMJJ_RS03625 0.43 +1.8 675,014 + MMJJ_RS03625 0.43 +0.1 675,035 - MMJJ_RS03625 0.45 +0.9 675,036 + MMJJ_RS03625 0.46 +0.1 675,086 - MMJJ_RS03625 0.52 +0.6 675,087 + MMJJ_RS03625 0.52 +1.3 675,100 - MMJJ_RS03625 0.54 +1.9 675,100 - MMJJ_RS03625 0.54 +1.9 675,113 + MMJJ_RS03625 0.55 -0.5 675,121 - MMJJ_RS03625 0.56 -0.5 675,125 - MMJJ_RS03625 0.57 +2.0 675,126 + MMJJ_RS03625 0.57 +3.0 675,126 + MMJJ_RS03625 0.57 -0.1 675,129 + MMJJ_RS03625 0.57 +1.1 675,129 + MMJJ_RS03625 0.57 -1.2 675,156 - MMJJ_RS03625 0.60 -1.7 675,157 + MMJJ_RS03625 0.61 -2.0 675,160 - MMJJ_RS03625 0.61 -2.5 675,177 + MMJJ_RS03625 0.63 +0.2 675,177 + MMJJ_RS03625 0.63 +3.4 675,197 + MMJJ_RS03625 0.66 +1.6 675,216 + MMJJ_RS03625 0.68 -1.2 675,278 - MMJJ_RS03625 0.76 +0.9 675,278 - MMJJ_RS03625 0.76 +0.1 675,288 - MMJJ_RS03625 0.77 +1.2 675,289 + MMJJ_RS03625 0.77 -1.3 675,289 + MMJJ_RS03625 0.77 +1.3
Or see this region's nucleotide sequence