Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03545

Experiment: McCas_formate_complete Antimycin A 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03535 and MMJJ_RS03540 are separated by 51 nucleotidesMMJJ_RS03540 and MMJJ_RS03545 are separated by 0 nucleotidesMMJJ_RS03545 and MMJJ_RS03550 are separated by 110 nucleotidesMMJJ_RS03550 and MMJJ_RS03555 are separated by 105 nucleotides MMJJ_RS03535: MMJJ_RS03535 - hypothetical protein, at 662,095 to 662,973 _RS03535 MMJJ_RS03540: MMJJ_RS03540 - TIGR00289 family protein, at 663,025 to 663,696 _RS03540 MMJJ_RS03545: MMJJ_RS03545 - flagella protein F, at 663,697 to 664,131 _RS03545 MMJJ_RS03550: MMJJ_RS03550 - tRNA-Val, at 664,242 to 664,318 _RS03550 MMJJ_RS03555: MMJJ_RS03555 - acetyl-CoA carboxylase biotin carboxylase subunit, at 664,424 to 665,929 _RS03555 Position (kb) 663 664 665Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 662.711 kb on - strand, within MMJJ_RS03535at 662.734 kb on - strand, within MMJJ_RS03535at 662.769 kb on - strand, within MMJJ_RS03535at 662.803 kb on + strand, within MMJJ_RS03535at 662.855 kb on - strand, within MMJJ_RS03535at 662.871 kb on + strand, within MMJJ_RS03535at 662.893 kb on + strandat 662.909 kb on - strandat 662.909 kb on - strandat 662.910 kb on + strandat 662.911 kb on - strandat 662.911 kb on - strandat 662.931 kb on - strandat 662.934 kb on - strandat 662.952 kb on + strandat 662.972 kb on + strandat 662.976 kb on + strandat 662.979 kb on - strandat 662.979 kb on - strandat 663.043 kb on - strandat 663.109 kb on - strand, within MMJJ_RS03540at 663.146 kb on + strand, within MMJJ_RS03540at 663.146 kb on + strand, within MMJJ_RS03540at 663.218 kb on - strand, within MMJJ_RS03540at 663.320 kb on + strand, within MMJJ_RS03540at 663.415 kb on + strand, within MMJJ_RS03540at 663.518 kb on - strand, within MMJJ_RS03540at 663.543 kb on - strand, within MMJJ_RS03540at 663.582 kb on + strand, within MMJJ_RS03540at 663.658 kb on - strandat 663.659 kb on + strandat 663.659 kb on + strandat 663.664 kb on + strandat 663.664 kb on + strandat 663.666 kb on + strandat 663.666 kb on + strandat 663.666 kb on + strandat 663.698 kb on - strandat 663.699 kb on + strandat 663.699 kb on + strandat 663.748 kb on - strand, within MMJJ_RS03545at 663.748 kb on - strand, within MMJJ_RS03545at 663.749 kb on + strand, within MMJJ_RS03545at 663.749 kb on + strand, within MMJJ_RS03545at 663.759 kb on - strand, within MMJJ_RS03545at 663.782 kb on - strand, within MMJJ_RS03545at 663.796 kb on + strand, within MMJJ_RS03545at 663.797 kb on - strand, within MMJJ_RS03545at 663.797 kb on - strand, within MMJJ_RS03545at 663.798 kb on + strand, within MMJJ_RS03545at 663.800 kb on + strand, within MMJJ_RS03545at 663.800 kb on + strand, within MMJJ_RS03545at 663.800 kb on + strand, within MMJJ_RS03545at 663.800 kb on + strand, within MMJJ_RS03545at 663.828 kb on + strand, within MMJJ_RS03545at 663.903 kb on - strand, within MMJJ_RS03545at 663.903 kb on - strand, within MMJJ_RS03545at 663.903 kb on - strand, within MMJJ_RS03545at 663.903 kb on - strand, within MMJJ_RS03545at 663.904 kb on + strand, within MMJJ_RS03545at 663.916 kb on - strand, within MMJJ_RS03545at 663.916 kb on - strand, within MMJJ_RS03545at 663.916 kb on - strand, within MMJJ_RS03545at 663.917 kb on + strand, within MMJJ_RS03545at 663.917 kb on + strand, within MMJJ_RS03545at 663.917 kb on + strand, within MMJJ_RS03545at 663.920 kb on + strand, within MMJJ_RS03545at 663.925 kb on - strand, within MMJJ_RS03545at 663.925 kb on - strand, within MMJJ_RS03545at 663.926 kb on + strand, within MMJJ_RS03545at 663.926 kb on + strand, within MMJJ_RS03545at 663.926 kb on + strand, within MMJJ_RS03545at 663.926 kb on + strand, within MMJJ_RS03545at 663.926 kb on + strand, within MMJJ_RS03545at 663.927 kb on - strand, within MMJJ_RS03545at 663.928 kb on + strand, within MMJJ_RS03545at 664.004 kb on - strand, within MMJJ_RS03545at 664.004 kb on - strand, within MMJJ_RS03545at 664.027 kb on - strand, within MMJJ_RS03545at 664.027 kb on - strand, within MMJJ_RS03545at 664.066 kb on - strand, within MMJJ_RS03545at 664.112 kb on - strandat 664.113 kb on + strandat 664.147 kb on + strandat 664.155 kb on - strandat 664.155 kb on - strandat 664.180 kb on - strandat 664.180 kb on - strandat 664.180 kb on - strandat 664.181 kb on + strandat 664.184 kb on - strandat 664.339 kb on - strandat 664.345 kb on + strandat 664.349 kb on + strandat 664.368 kb on - strandat 664.394 kb on + strandat 664.394 kb on + strandat 664.407 kb on - strandat 664.411 kb on - strandat 664.412 kb on + strandat 664.437 kb on - strandat 664.437 kb on - strandat 664.469 kb on - strandat 664.469 kb on - strandat 664.469 kb on - strandat 664.470 kb on + strandat 664.482 kb on + strandat 664.689 kb on + strand, within MMJJ_RS03555

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Antimycin A 0.01 mM
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662,711 - MMJJ_RS03535 0.70 +1.2
662,734 - MMJJ_RS03535 0.73 -0.4
662,769 - MMJJ_RS03535 0.77 -0.6
662,803 + MMJJ_RS03535 0.81 +0.0
662,855 - MMJJ_RS03535 0.86 -0.1
662,871 + MMJJ_RS03535 0.88 -2.6
662,893 + -0.2
662,909 - +3.3
662,909 - +0.6
662,910 + +1.3
662,911 - +1.6
662,911 - +2.0
662,931 - +3.9
662,934 - -0.9
662,952 + -1.6
662,972 + -3.9
662,976 + +1.9
662,979 - -1.9
662,979 - +3.3
663,043 - +0.6
663,109 - MMJJ_RS03540 0.12 +2.4
663,146 + MMJJ_RS03540 0.18 -0.6
663,146 + MMJJ_RS03540 0.18 -1.0
663,218 - MMJJ_RS03540 0.29 -0.6
663,320 + MMJJ_RS03540 0.44 +1.3
663,415 + MMJJ_RS03540 0.58 -2.5
663,518 - MMJJ_RS03540 0.73 +1.7
663,543 - MMJJ_RS03540 0.77 +3.6
663,582 + MMJJ_RS03540 0.83 +4.0
663,658 - -3.6
663,659 + -1.8
663,659 + +0.1
663,664 + -1.5
663,664 + -0.9
663,666 + +0.0
663,666 + -0.6
663,666 + +1.1
663,698 - +2.0
663,699 + -1.2
663,699 + -2.2
663,748 - MMJJ_RS03545 0.12 -0.4
663,748 - MMJJ_RS03545 0.12 +2.4
663,749 + MMJJ_RS03545 0.12 -2.8
663,749 + MMJJ_RS03545 0.12 -1.3
663,759 - MMJJ_RS03545 0.14 -0.0
663,782 - MMJJ_RS03545 0.20 -1.2
663,796 + MMJJ_RS03545 0.23 -2.2
663,797 - MMJJ_RS03545 0.23 +0.0
663,797 - MMJJ_RS03545 0.23 +0.4
663,798 + MMJJ_RS03545 0.23 -2.0
663,800 + MMJJ_RS03545 0.24 +2.2
663,800 + MMJJ_RS03545 0.24 -0.1
663,800 + MMJJ_RS03545 0.24 +1.7
663,800 + MMJJ_RS03545 0.24 -0.1
663,828 + MMJJ_RS03545 0.30 +0.3
663,903 - MMJJ_RS03545 0.47 -1.4
663,903 - MMJJ_RS03545 0.47 -1.7
663,903 - MMJJ_RS03545 0.47 +0.4
663,903 - MMJJ_RS03545 0.47 -1.7
663,904 + MMJJ_RS03545 0.48 -0.4
663,916 - MMJJ_RS03545 0.50 +0.4
663,916 - MMJJ_RS03545 0.50 +3.4
663,916 - MMJJ_RS03545 0.50 +4.5
663,917 + MMJJ_RS03545 0.51 +0.4
663,917 + MMJJ_RS03545 0.51 +1.4
663,917 + MMJJ_RS03545 0.51 -0.6
663,920 + MMJJ_RS03545 0.51 +2.0
663,925 - MMJJ_RS03545 0.52 +0.9
663,925 - MMJJ_RS03545 0.52 +2.1
663,926 + MMJJ_RS03545 0.53 -0.2
663,926 + MMJJ_RS03545 0.53 -2.7
663,926 + MMJJ_RS03545 0.53 -1.9
663,926 + MMJJ_RS03545 0.53 +1.7
663,926 + MMJJ_RS03545 0.53 -3.0
663,927 - MMJJ_RS03545 0.53 +0.2
663,928 + MMJJ_RS03545 0.53 -1.8
664,004 - MMJJ_RS03545 0.71 -1.5
664,004 - MMJJ_RS03545 0.71 -1.0
664,027 - MMJJ_RS03545 0.76 -2.4
664,027 - MMJJ_RS03545 0.76 -0.6
664,066 - MMJJ_RS03545 0.85 +2.8
664,112 - +2.3
664,113 + -2.1
664,147 + -2.1
664,155 - -0.9
664,155 - -1.9
664,180 - -1.5
664,180 - +2.6
664,180 - +0.0
664,181 + +0.4
664,184 - +2.3
664,339 - -1.8
664,345 + -2.5
664,349 + +0.7
664,368 - -2.9
664,394 + -2.6
664,394 + +0.7
664,407 - +1.9
664,411 - -3.1
664,412 + -1.1
664,437 - +3.5
664,437 - -0.2
664,469 - -0.5
664,469 - -0.7
664,469 - -2.7
664,470 + +1.6
664,482 + +3.8
664,689 + MMJJ_RS03555 0.18 +2.4

Or see this region's nucleotide sequence